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Spg030863 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTGTATCAATACAGCAGATATTATCCAAAGAAGGAATCCTGGCTCTTTTCTCTCCCCTGGTTGCTGCATCATGTGCTTCAAAGCAAACAAGACCCAAGCCCACTTATTCAGTAGCTGTGTATATGCCTCTACTTTCTGGTCCTATCTTCAACAAGCTTTTGGATGGAAATTTGCCCGGCCGGGCGATATTCACGCTCTTATATCCTTTGCTATTCTTGGTCACCCCTTTAGGAAGGATAAAAAGCTCATTTGGCTGAATTTTTTGTATGCTTTCTTATGGAACCTTTGGCTAGAAAGGAATGCTAGGATCTTCACTGACAGGAATCAAAGCATATGTTCCTTTATCAAATCTACAACCTTTCTAGCTCTTTTTTGGAGTAGAAACATCCCCACTTTTTGTAATTACTCCCTCTCTTCCCTCATATCACATTGGAGATATCTTTTGTAATTACCTATGATAGGTTGATCTTTTGTATCTATTTCATACATCTATGAAATGGTTTGTTTCCTATCAAAAAAAAAAAAAGTTGTTCGAGGCCCACCAGAAGGGCATGAAAATAATATCCACATCCTTCTTCCCCTTCCAGGTTTATGACTTACACAAGATTCTTGCTGATCGTGTATAGTTAATATTTTTAGTCCAAAGAATTTTGAGATACTTTGATGGTGCATCTGTAATTACTTCGACCAGTTAAGATTTAACTGATCACATAATTTGTTCAAGCAATTTTGTTTACACTGTTCTTATTTTCGGCAGACAGAGCGCAAGTTTGTATTTAGACCCAGTGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTCAGATTGATTAAAGGTAAGTACTATATTTATTCCAGGTTAATTTACTTCTGTTTCCCTATTTATGGTCACATTGTATACTCGTAGTATTTATCTTTTCTTTTCAACGTTGATTTTTTGGGGAATGATCTTTTCTTTTCATTTTTAGCACCTTCCTCTAGTAGAATTGAACTGCCTGGATGTCTTCATAACTATGGGCCATATATTTTTCAGGCCATAAAAACACCAAGGAAGGATCAAATAAACCACCATGGCTTAATCTCACCAGGGACCAGGTTTTTAATACTTTACTGACATTATATATCGAATCATTGACTTTGCCAAGGAAAAGGGTCTAATTAAAAGACACCATAAGTTAGAGCATTGGAAATATTCGATGATTAAATTATTGCAAATATGATTTTAGAATAGAACATCAAATGCTGTGATAGGTAAATAGGAAATATGGCAAATTCGCACATGTTTTAAGAAGTATGTTACATAATTCTCACCTTCAAGTTTATCTTCATTCTAAGAATTATTCTTTGGGTAGTTCTATATTGAAAATACTTTGTAATTGATAAAATTTTAAAGTGATTTCATCTAGGGCCTTCAGATATCGATCTCAAACATCATTTCAATAAAGCATATTGTGAGTGTCTTGAATTTATCTTATGAGAAGACAATTGATGACATGCTACGTTTTTTCAGGGTGGAAGTTACATTTTTGAGTTTAAAAACTTCTCCGATCTTCATGTTTGCAGGGAGTTTGTGGGTAAGCCAGGATTCAAAGTTATAAGCTGTAATGCAATTTACTACCTTTCTTTATGCCTTAAATTATGTGGGAACCGTAGGCTCATTGATCTGAAAGATGGTGAATAGTTGTGAAATTTCCCAATGGATTTGATAAACTCCTTGTTCGGTTTAATTATTCATAAAAGTCGATTAGGACAAAGGGATGCGAAAGGGTGAATGTGGTAGTTAGCTTTAGAAGGGCACCGCAAACACACTACCTTGTAATAAGTTCGAGGGGCGAAGTAAGGAAGTGGAGTGTTGTGAGGTTGAATAAAATGAGAAGTCCAGAAGATGGTCAGGTAGGGAATCGTTGCGTAGTTTTGTCCAATTACCTTGGATTTGAGAGAGTAAAAGAAGATTCTCAAATCTCTTCCTAGGGATTTCTACTGACTAATCGGGATCTGAGGAACACCTTAACTTATACTATTCTCCATAACAATCATTCAAATAACTTTTAAATATTTCTCTATTCTTTGTCAGACATTTTACTTATACGCTTTTCCTGTATTTGTTTGATTTCCTAGCCTGATGGTTTGGCATCTGGTGCCTTCTCCAGGAAGTGCTCTAGCAAAGTCGGGAGAGCCTGCACAAACTCCCTCTGAGAAGCCTGTAGCCACATTTCCTCATGAACAACTCAGTAAATCAGAAATGGAACTCCGAATGAGATGTTTGCAAGAGGATAGGTAGACCGATGATCCATTTCCTTGTAAACAAGAAGTAATTATGACCTTTATCATTTTATGCTTGCCAAAGTCATGTAACATCTCTCATCTTATCATTTATTTGGCAGTGAACTGCAGAAACTTCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAGTTCTGGGCAGCAAGGAAGGTGAGGAGAGAACTTTGTTTCTCTTTATCTGTTCCATATTTGAAGTTGACCTTCTTTTTTAGAATTCTGATTGTATATTTAATGTGATCCAGTTCACAAAAGTATATTCCCAAGAAAATATGACACTTTCTGCAACTAATTGATACAGAAATTACTGGAACGAGACAACTCCAAAAAGTCAAAACAGTTGGTTGGTTTCAAGAGTTCAATGGTTCTGGACACCAAACCAATGTCTGATGGTCGGGTCAGCTTCATTACCTTTTCCCTACCCTATCAAACGTAGTTTATTAATTATTAATATCTTATCTGTCAAATCATTCCCCCTGCTTGGTTAATTGTACCAAAACTGAACCTTGTTATCTTTTTCTTCTTTCAGACAAACAAGGTTACATTTAATTTGACACCAGAGATCAAATATCAGGCATGATTTTATTCTTTGTTCCCTCTTCAGTCTTCACCCTCCCTCTCCAATTTTTGTATAATTCTCTAGAGATAGTTCGGGCTATTAGCAAGGGATTTTAGTGACAAGAAGTGTTTTGACATTGTAGTATAGTGGTTAGAGATTAGTTTTTGAAGGTTACATAATTCTAGCAACGTGTTTAGAGATACTTGGATAGTTTAGATTTATGGCTGCATTTGAAATACGAATACCAAATTCTCAAGGTTCATCAAGGGAAACCTTGGGAGTATTTGAGCTTCTAAGGGGTCTATGCGAAGATAATATTTCTATTTGGGAGTTGGTTTTCAAGAATTTTTGTAATTACCCCTACATCTTATTATTTTGAATTGGAGTCCTTTTTGTGTAGTTGTTTGACTACTTTCAG ATGCTTGTATCAATACAGCAGATATTATCCAAAGAAGGAATCCTGGCTCTTTTCTCTCCCCTGGTTGCTGCATCATGTGCTTCAAAGCAAACAAGACCCAAGCCCACTTATTCAGTAGCTGTGTATATGCCTCTACTTTCTGGTCCTATCTTCAACAAGCTTTTGGATGGAAATTTGCCCGGCCGGGCGATATTCACGCTCTTATATCCTTTGCTATTCTTGACAGAGCGCAAGTTTGTATTTAGACCCAGTGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTCAGATTGATTAAAGGCCATAAAAACACCAAGGAAGGATCAAATAAACCACCATGGCTTAATCTCACCAGGGACCAGGGTGGAAGTTACATTTTTGAGTTTAAAAACTTCTCCGATCTTCATGTTTGCAGGGAGTTTGTGGGTAAGCCAGGATTCAAAGTTATAAGCTGTAATGCAATTTACTACCTTTCTTTATGCCTTAAATTATGTGGGAACCGTAGGCTCATTGATCTGAAAGATGGAAGTGCTCTAGCAAAGTCGGGAGAGCCTGCACAAACTCCCTCTGAGAAGCCTGTAGCCACATTTCCTCATGAACAACTCAGTAAATCAGAAATGGAACTCCGAATGAGATGTTTGCAAGAGGATAGTGAACTGCAGAAACTTCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAGTTCTGGGCAGCAAGGAAGAAATTACTGGAACGAGACAACTCCAAAAAGTCAAAACAGTTGGTTGGTTTCAAGAGTTCAATGGTTCTGGACACCAAACCAATGTCTGATGGTCGGGTCAGCTTCATTACCTTTTCCCTACCCTATCAAACGTAG ATGCTTGTATCAATACAGCAGATATTATCCAAAGAAGGAATCCTGGCTCTTTTCTCTCCCCTGGTTGCTGCATCATGTGCTTCAAAGCAAACAAGACCCAAGCCCACTTATTCAGTAGCTGTGTATATGCCTCTACTTTCTGGTCCTATCTTCAACAAGCTTTTGGATGGAAATTTGCCCGGCCGGGCGATATTCACGCTCTTATATCCTTTGCTATTCTTGACAGAGCGCAAGTTTGTATTTAGACCCAGTGATCCCACTTCAGCTTCTAAGCTTGACGTGGAGTTCAGATTGATTAAAGGCCATAAAAACACCAAGGAAGGATCAAATAAACCACCATGGCTTAATCTCACCAGGGACCAGGGTGGAAGTTACATTTTTGAGTTTAAAAACTTCTCCGATCTTCATGTTTGCAGGGAGTTTGTGGGTAAGCCAGGATTCAAAGTTATAAGCTGTAATGCAATTTACTACCTTTCTTTATGCCTTAAATTATGTGGGAACCGTAGGCTCATTGATCTGAAAGATGGAAGTGCTCTAGCAAAGTCGGGAGAGCCTGCACAAACTCCCTCTGAGAAGCCTGTAGCCACATTTCCTCATGAACAACTCAGTAAATCAGAAATGGAACTCCGAATGAGATGTTTGCAAGAGGATAGTGAACTGCAGAAACTTCATAAACAATTTGTGATTGGTGGTGTGTTGACCGAATCTGAGTTCTGGGCAGCAAGGAAGAAATTACTGGAACGAGACAACTCCAAAAAGTCAAAACAGTTGGTTGGTTTCAAGAGTTCAATGGTTCTGGACACCAAACCAATGTCTGATGGTCGGGTCAGCTTCATTACCTTTTCCCTACCCTATCAAACGTAG MLVSIQQILSKEGILALFSPLVAASCASKQTRPKPTYSVAVYMPLLSGPIFNKLLDGNLPGRAIFTLLYPLLFLTERKFVFRPSDPTSASKLDVEFRLIKGHKNTKEGSNKPPWLNLTRDQGGSYIFEFKNFSDLHVCREFVGKPGFKVISCNAIYYLSLCLKLCGNRRLIDLKDGSALAKSGEPAQTPSEKPVATFPHEQLSKSEMELRMRCLQEDSELQKLHKQFVIGGVLTESEFWAARKKLLERDNSKKSKQLVGFKSSMVLDTKPMSDGRVSFITFSLPYQT Homology
BLAST of Spg030863 vs. NCBI nr
Match: KAG7029183.1 (putative RNA polymerase II transcription factor B subunit 1-1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 311.6 bits (797), Expect = 7.0e-81 Identity = 165/213 (77.46%), Postives = 170/213 (79.81%), Query Frame = 0
BLAST of Spg030863 vs. NCBI nr
Match: KAG6597731.1 (General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 311.6 bits (797), Expect = 7.0e-81 Identity = 165/213 (77.46%), Postives = 170/213 (79.81%), Query Frame = 0
BLAST of Spg030863 vs. NCBI nr
Match: XP_022932684.1 (probable RNA polymerase II transcription factor B subunit 1-1 [Cucurbita moschata]) HSP 1 Score: 311.6 bits (797), Expect = 7.0e-81 Identity = 165/213 (77.46%), Postives = 170/213 (79.81%), Query Frame = 0
BLAST of Spg030863 vs. NCBI nr
Match: XP_022972269.1 (probable RNA polymerase II transcription factor B subunit 1-1 [Cucurbita maxima]) HSP 1 Score: 311.6 bits (797), Expect = 7.0e-81 Identity = 165/213 (77.46%), Postives = 170/213 (79.81%), Query Frame = 0
BLAST of Spg030863 vs. NCBI nr
Match: XP_008457278.1 (PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo]) HSP 1 Score: 310.8 bits (795), Expect = 1.2e-80 Identity = 162/213 (76.06%), Postives = 171/213 (80.28%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy Swiss-Prot
Match: Q9M322 (General transcription and DNA repair factor IIH subunit TFB1-3 OS=Arabidopsis thaliana OX=3702 GN=TFB1-3 PE=2 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 1.5e-41 Identity = 101/212 (47.64%), Postives = 124/212 (58.49%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy Swiss-Prot
Match: Q3ECP0 (General transcription and DNA repair factor IIH subunit TFB1-1 OS=Arabidopsis thaliana OX=3702 GN=TFB1-1 PE=2 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 2.8e-40 Identity = 98/212 (46.23%), Postives = 123/212 (58.02%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy Swiss-Prot
Match: Q55FP1 (General transcription factor IIH subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2h1 PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.5e-06 Identity = 31/96 (32.29%), Postives = 59/96 (61.46%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy Swiss-Prot
Match: Q9DBA9 (General transcription factor IIH subunit 1 OS=Mus musculus OX=10090 GN=Gtf2h1 PE=1 SV=2) HSP 1 Score: 50.4 bits (119), Expect = 3.8e-05 Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy Swiss-Prot
Match: P32780 (General transcription factor IIH subunit 1 OS=Homo sapiens OX=9606 GN=GTF2H1 PE=1 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 5.0e-05 Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy TrEMBL
Match: A0A6J1IB04 (probable RNA polymerase II transcription factor B subunit 1-1 OS=Cucurbita maxima OX=3661 GN=LOC111470852 PE=3 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 3.4e-81 Identity = 165/213 (77.46%), Postives = 170/213 (79.81%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy TrEMBL
Match: A0A6J1EXP7 (probable RNA polymerase II transcription factor B subunit 1-1 OS=Cucurbita moschata OX=3662 GN=LOC111439158 PE=3 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 3.4e-81 Identity = 165/213 (77.46%), Postives = 170/213 (79.81%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy TrEMBL
Match: A0A1S3C6E8 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497008 PE=4 SV=1) HSP 1 Score: 310.8 bits (795), Expect = 5.8e-81 Identity = 162/213 (76.06%), Postives = 171/213 (80.28%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy TrEMBL
Match: A0A5A7V248 (Putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00040 PE=4 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 9.9e-81 Identity = 161/209 (77.03%), Postives = 168/209 (80.38%), Query Frame = 0
BLAST of Spg030863 vs. ExPASy TrEMBL
Match: A0A6J1DNY2 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022945 PE=3 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 2.2e-80 Identity = 162/213 (76.06%), Postives = 171/213 (80.28%), Query Frame = 0
BLAST of Spg030863 vs. TAIR 10
Match: AT3G61420.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) ) HSP 1 Score: 171.4 bits (433), Expect = 1.1e-42 Identity = 101/212 (47.64%), Postives = 124/212 (58.49%), Query Frame = 0
BLAST of Spg030863 vs. TAIR 10
Match: AT1G55750.1 (BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) ) HSP 1 Score: 167.2 bits (422), Expect = 2.0e-41 Identity = 98/212 (46.23%), Postives = 123/212 (58.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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