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Spg030775 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTTATCAGTTATCCTCATCACAGAGATTGGTGCAGGAGCATATTGTAGCCTTCAAGGCTTATGCGTTTCAACTTGTGGCAAATGGGAATCCCGACACGTTGAGGTTTATAGTCTGTGAATACACGTTTAATAAGTTTTGGGAAGGGGTGGAGGAGGGTGGCGGAGCCCACCTTGTTAAGTGGGAAGTGGTTTCTAAGCTGACAGATGTTGGGGATTGGGTATTGGTAACCTTAGACTACGTAACCAGGTTCTTTTGGTGAAGTGGTTGTGGCATTTCTTCTTTGGGCAAGACACTCAGTGGTATAGGGTCGTCGTGAGTAAGTATGGGTCTCTGGTCAACGATTTAAGGGTTCTAGCAAAAACCTCAGGACTGCAACTGCTTTGGGGGTTCCTTTGTTTTCTCATCATATTCGATGCTCTATAGGGGATAAAACTTACTTTTGGGAGGATTCGATCCTTGTGTTCCCTTTTTCCTCATCTTTATAATCAGTTTGAGAAGAGGCTACATTCAATTGCCTTTCTCTTACCCTCTCGCAACCCTGCCTCTCTCTCCTTGGGCATCAGTCATCCTCTCACCAACCGCAAGGTGACGGATCTTGTCAGCCTCCTCTCGATCTTTCAAATCAGGTCACTCACCTTCGGAGACGAGACTCACATGTCAAGATCCCTAGACCCTTCGAAGGTTTCTCTTGTAATTCTTTTTTCCAAATTTTTTGTGCTTCTCCCTCTTCTCAGGGTGTTTGTGCCTTCTCTTCTCTTTGGAAGGTTGTTAGGGGATTGTTCATTTGCATCTTCTCTCTGGAGCTGCTTCTTTTGTTTCTTTGAGGTGTCCTCAGTTCGTAATTCGTAATAGAGATTGTGGCTCCATGATTGAGGAAGTTCTTCTCAATTCTCCCTTTCGTGACAAAGGAAAGTTTTTATGGCAAGCTTGCTTCTTTGCTAATATGTGGAATATTTGGCTTGCAAGGAATGATTGTACTTTTGGGGACTGAGAGATCGAGAGAGGATCTTTTGGAGTTGATTAGACTTAGCACTTCTTTATGGACGTCTGTTAGTCGGATCTTTGTAATTACTCTTTGGAGCTTATTCTTTTGGGTTGAGATTCTTTCTTGTAATTAGGTTTTGGGGGCCTTGGCTTGTTGGCTTGTATCTATCTAGTCCTCGGGACTTGTTTTTTCTATGCCCTTGTTCTCCCTTTCATATTAAAGTTGCAGTTATAAAAAAAAAATAAAACATTTAAGAAGTTTGGCAGAATAGGGAGTGCAATGCACACAGAAAAGCAATAGTTATTAACTATGTTAATTTTTTCCATGGACTTTTGGATAGTTCACAGCCTGCAAGGTTGGAGATGGTTTTGATTTTCTTCGGTATTCTGATTAGGAACATGCTTTGGCCATCAGTGCATGGAAGACACTAGTTGACTTGTCTCATTATGTATTGCTGCTTGTCTTTGTTTGACGACCTAGTAAAATTGATAGACCGTTGGTTACGGACAACCTATAATAAATAATTAATAAATATGGAAAGTTATGTTTTTGAAATTTATGATTATTTCCAATTTGGTGTTCACCTCCTTTGGAGAAACATTTGAATTCTTACCCAAATTCCAAAAAACAAAAACATGTTATTAAAAAATACTCGTCTTTTTTTTAATTTTCAGAACTTCGCTTGGATTTCAAAACATTTTTAAAAAGTAGATTTAAAAAAAAAAAAAACCCTCATAGGTGAAAGTAGTGTTTATAAGCTTAACTTTTTTACAAACAAAAAAACTAAGGTCCTGTTTCATAACCATTTGGATTTTGGTTTTTGAAAATTAAGCTTATAAACACTACTTCTATTGATAAGTTTCTTTGTTTTGTTATCTACCTTCTTCCCTTGTTTTAAAAAATCAAGTCAAGTTTTGAAAAAAAAAATTGTTTGCCCCATTTGATAACCAATTTGGTTTTTGAAAGTTATACCTTGTTTTCTCTCTCAATTTCCTTATAATGAGTTTCATCTTTGTTAGACACATTTGCATTCCTAGCCAAATTAAAAAAAAAAGCAAGTTTTTGAAAACTATTTTTTTTAGTTTTCAAAACTTGACTTGGTTTTTGAAAATATGGTAAGAAAGTTGTAGCAAAATCAAGAAACTTATAGGTGGAAATAGTGTTTTCAAGCTTAATTTTCAAAAACCAAAACAAAAAACCAAATGGTTATCAAACGGGGTCTTAGTATTAAATACTTGACCTAGTTTTGAAATCATAGGAAGAAGATAGATAACAAAACATAGAAACTTATATGTGGAAGTAGAGTTTGTAGGTGTAATTTTAAAAAACCAAAAACCAAAACCAAATGGTTGCCGTAGCTTTCAAAAAGATTGTTTTTGGTTTTGAAATTTGGCTAAGAATTCAAATGTTTTCTTAACAAAGATGAAAATCATTGTAATGAAATCGAGAGAAAACAAACATAATTTTCAAAAACCAAAAATAAAAAACTAAAGGTTTATCGAACGGTCCAAGGTCTCTGACATTTCGTTGTTAGTTTATATGTTTCTGTTCCCTAAATTGCTTTTTGTTTTTGTGCCCATACTGTAGCAACATGTCCAAATTGTTCGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAATGAAAACTGCAGACATAATTGGCGTGAGGATTAAGTGCCATGAGAAGATACGTTTGTGAGATCGTAAGTTTTTCATTACTGGTTTTCTATATCTTTTTTCTAACCAATGTAGAAGTAATTTCTATTAATAAAATATTTCTTACCTGAATTGCATTATGAATGTTAATGGCATCCACTAGAGAATAACTGAATTGGTTAAGGCATATACCCCAAGGGGTAAAAGGTTCGAATCTTTCACCGAACTTGAAAAAAAAGTATGACA ATGAGTTATCAGTTATCCTCATCACAGAGATTGGTGCAGGAGCATATTGTAGCCTTCAAGGCTTATGCGTTTCAACTTGTGGCAAATGGGAATCCCGACACGTTGAGGTTTATAGTCTGTGAATACACGTTTAATAAGTTTTGGGAAGGGGTGGAGGAGGGTGGCGGAGCCCACCTTGTTAAGTGGGAAGTGGTTTCTAAGCTGACAGATGTTGGGGATTGGGGGATAAAACTTACTTTTGGGAGGATTCGATCCTTGTGTTCCCTTTTTCCTCATCTTTATAATCAGTTTGAGAAGAGGCTACATTCAATTGCCTTTCTCTTACCCTCTCGCAACCCTGCCTCTCTCTCCTTGGGCATCAGTCATCCTCTCACCAACCGCAAGGTGACGGATCTTGTCAGCCTCCTCTCGATCTTTCAAATCAGGTCACTCACCTTCGGAGACGAGACTCACATGTCAAGATCCCTAGACCCTTCGAAGGAAAGTTTTTATGGCAAGCTTGCTTCTTTGCTAATATGTGGAATATTTGGCTTGCAAGGAATGATTGTACTTTTGGGGACTGAGAGATCGAGAGAGGATCTTTTGGAGTTGATTAGACTTAGCACTTCTTTATGGACTTCACAGCCTGCAAGGTTGGAGATGGTTTTGATTTTCTTCGCAACATGTCCAAATTGTTCGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAATGAAAACTGCAGACATAATTGGCGTGAGGATTAA ATGAGTTATCAGTTATCCTCATCACAGAGATTGGTGCAGGAGCATATTGTAGCCTTCAAGGCTTATGCGTTTCAACTTGTGGCAAATGGGAATCCCGACACGTTGAGGTTTATAGTCTGTGAATACACGTTTAATAAGTTTTGGGAAGGGGTGGAGGAGGGTGGCGGAGCCCACCTTGTTAAGTGGGAAGTGGTTTCTAAGCTGACAGATGTTGGGGATTGGGGGATAAAACTTACTTTTGGGAGGATTCGATCCTTGTGTTCCCTTTTTCCTCATCTTTATAATCAGTTTGAGAAGAGGCTACATTCAATTGCCTTTCTCTTACCCTCTCGCAACCCTGCCTCTCTCTCCTTGGGCATCAGTCATCCTCTCACCAACCGCAAGGTGACGGATCTTGTCAGCCTCCTCTCGATCTTTCAAATCAGGTCACTCACCTTCGGAGACGAGACTCACATGTCAAGATCCCTAGACCCTTCGAAGGAAAGTTTTTATGGCAAGCTTGCTTCTTTGCTAATATGTGGAATATTTGGCTTGCAAGGAATGATTGTACTTTTGGGGACTGAGAGATCGAGAGAGGATCTTTTGGAGTTGATTAGACTTAGCACTTCTTTATGGACTTCACAGCCTGCAAGGTTGGAGATGGTTTTGATTTTCTTCGCAACATGTCCAAATTGTTCGTTTGGCAAGGCTGCTTTTATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAATGAAAACTGCAGACATAATTGGCGTGAGGATTAA MSYQLSSSQRLVQEHIVAFKAYAFQLVANGNPDTLRFIVCEYTFNKFWEGVEEGGGAHLVKWEVVSKLTDVGDWGIKLTFGRIRSLCSLFPHLYNQFEKRLHSIAFLLPSRNPASLSLGISHPLTNRKVTDLVSLLSIFQIRSLTFGDETHMSRSLDPSKESFYGKLASLLICGIFGLQGMIVLLGTERSREDLLELIRLSTSLWTSQPARLEMVLIFFATCPNCSFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED Homology
BLAST of Spg030775 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]) HSP 1 Score: 98.2 bits (243), Expect = 1.1e-16 Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 0
BLAST of Spg030775 vs. NCBI nr
Match: XP_022152387.1 (DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152388.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152389.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152390.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia] >XP_022152392.1 DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]) HSP 1 Score: 97.4 bits (241), Expect = 1.9e-16 Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0
BLAST of Spg030775 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus]) HSP 1 Score: 95.1 bits (235), Expect = 9.4e-16 Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0
BLAST of Spg030775 vs. NCBI nr
Match: XP_022152562.1 (DNA-directed RNA polymerase III subunit RPC10-like [Momordica charantia]) HSP 1 Score: 91.7 bits (226), Expect = 1.0e-14 Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 0
BLAST of Spg030775 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 91.3 bits (225), Expect = 1.4e-14 Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy Swiss-Prot
Match: Q9Y2Y1 (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K PE=1 SV=2) HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08 Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy Swiss-Prot
Match: Q9CQZ7 (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k PE=3 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08 Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy Swiss-Prot
Match: Q2M2S7 (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 7.5e-08 Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy Swiss-Prot
Match: Q04307 (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC11 PE=1 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06 Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy Swiss-Prot
Match: O13896 (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc11 PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 1.3e-04 Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy TrEMBL
Match: A0A6J1DDT5 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020128 PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 9.2e-17 Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 4.5e-16 Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 4.5e-16 Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy TrEMBL
Match: A0A6J1DGL3 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020260 PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 5.0e-15 Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 0
BLAST of Spg030775 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 6.6e-15 Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 0
BLAST of Spg030775 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal ) HSP 1 Score: 50.1 bits (118), Expect = 3.2e-06 Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 0
BLAST of Spg030775 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal ) HSP 1 Score: 50.1 bits (118), Expect = 3.2e-06 Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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