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Spg030770 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATTTCTGTGGTTTCAGTGTGAAAATGGACATGTAGCATTCTCTGACTGCTGCAGTAAAAATGTAGGAGCATATCCTTTTTGTCACAAGAAAATTGGGGACATCCGTTGTCGAGCCATAGAAAACGTACTGGAATCACTCAAGGGAGCCTGTCAAAACTCAAAGTATGGGTGTAAATCAAAGTTAACATTTGACCAGAGAAAAGAGCATTGGAACACATGTTCATTTGGTCCATGTGCATGCCCTTTATCTGACTGCGATTTCATCACCTCGTCAAAGAAACTATACGCACACTTCAACTAGAAACACCCACATTCAGCAGTCAATTTCCAGTACTATTCCAGCTTCACTGTCGATCTGAAACACGACAACAAGTTTCTCGTCCTTCGAGAAAAGAAATCTGGAGTTCTCTTTGTGCTTGTCAGTAGAACCCAACCCCTCGGAAAGGCGATCACCGTGAACTCTATCGGGTTCGCCTCCACCAAGGAGGGGGGGCTTTCGTTAGAAATAGTAATGAGAAGTGAAGAAATCAAACTCAGCTTGCAATCAGCAATGATGAAGGACATTAAGGAATTGGTTGATGAGATGCCTCCAGAGGAGTTCCTTGGGATTCCCAACAAGTTTTTTGGTTCTAATAGACAAATCAAGCTGGAGCTTCGCATATGGTAA ATGAAATTTCTGTGGTTTCAGTGTGAAAATGGACATGTAGCATTCTCTGACTGCTGCAGTAAAAATGTAGGAGCATATCCTTTTTGTCACAAGAAAATTGGGGACATCCGTTGTCGAGCCATAGAAAACGTACTGGAATCACTCAAGGGAGCCTGTCAAAACTCAAACTTCACTGTCGATCTGAAACACGACAACAAGTTTCTCGTCCTTCGAGAAAAGAAATCTGGAGTTCTCTTTGTGCTTGTCAGTAGAACCCAACCCCTCGGAAAGGCGATCACCGTGAACTCTATCGGGTTCGCCTCCACCAAGGAGGGGGGGCTTTCGTTAGAAATAGTAATGAGAAGTGAAGAAATCAAACTCAGCTTGCAATCAGCAATGATGAAGGACATTAAGGAATTGGTTGATGAGATGCCTCCAGAGGAGTTCCTTGGGATTCCCAACAAGTTTTTTGGTTCTAATAGACAAATCAAGCTGGAGCTTCGCATATGGTAA ATGAAATTTCTGTGGTTTCAGTGTGAAAATGGACATGTAGCATTCTCTGACTGCTGCAGTAAAAATGTAGGAGCATATCCTTTTTGTCACAAGAAAATTGGGGACATCCGTTGTCGAGCCATAGAAAACGTACTGGAATCACTCAAGGGAGCCTGTCAAAACTCAAACTTCACTGTCGATCTGAAACACGACAACAAGTTTCTCGTCCTTCGAGAAAAGAAATCTGGAGTTCTCTTTGTGCTTGTCAGTAGAACCCAACCCCTCGGAAAGGCGATCACCGTGAACTCTATCGGGTTCGCCTCCACCAAGGAGGGGGGGCTTTCGTTAGAAATAGTAATGAGAAGTGAAGAAATCAAACTCAGCTTGCAATCAGCAATGATGAAGGACATTAAGGAATTGGTTGATGAGATGCCTCCAGAGGAGTTCCTTGGGATTCCCAACAAGTTTTTTGGTTCTAATAGACAAATCAAGCTGGAGCTTCGCATATGGTAA MKFLWFQCENGHVAFSDCCSKNVGAYPFCHKKIGDIRCRAIENVLESLKGACQNSNFTVDLKHDNKFLVLREKKSGVLFVLVSRTQPLGKAITVNSIGFASTKEGGLSLEIVMRSEEIKLSLQSAMMKDIKELVDEMPPEEFLGIPNKFFGSNRQIKLELRIW Homology
BLAST of Spg030770 vs. NCBI nr
Match: XP_030952500.1 (E3 ubiquitin-protein ligase SINA-like 10 [Quercus lobata]) HSP 1 Score: 108.6 bits (270), Expect = 5.1e-20 Identity = 76/217 (35.02%), Postives = 100/217 (46.08%), Query Frame = 0
BLAST of Spg030770 vs. NCBI nr
Match: KAF3969555.1 (hypothetical protein CMV_006661 [Castanea mollissima]) HSP 1 Score: 107.1 bits (266), Expect = 1.5e-19 Identity = 75/217 (34.56%), Postives = 99/217 (45.62%), Query Frame = 0
BLAST of Spg030770 vs. NCBI nr
Match: XP_023895190.1 (E3 ubiquitin-protein ligase SINA-like 10 [Quercus suber]) HSP 1 Score: 104.0 bits (258), Expect = 1.3e-18 Identity = 74/217 (34.10%), Postives = 97/217 (44.70%), Query Frame = 0
BLAST of Spg030770 vs. NCBI nr
Match: PSS30614.1 (E3 ubiquitin-protein ligase SINA-like [Actinidia chinensis var. chinensis]) HSP 1 Score: 103.2 bits (256), Expect = 2.1e-18 Identity = 72/218 (33.03%), Postives = 99/218 (45.41%), Query Frame = 0
BLAST of Spg030770 vs. NCBI nr
Match: XP_011046039.1 (PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Populus euphratica]) HSP 1 Score: 103.2 bits (256), Expect = 2.1e-18 Identity = 73/218 (33.49%), Postives = 100/218 (45.87%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy Swiss-Prot
Match: Q84K34 (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana OX=3702 GN=At5g37930 PE=2 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 7.2e-09 Identity = 52/223 (23.32%), Postives = 89/223 (39.91%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy Swiss-Prot
Match: Q9FKD9 (Putative E3 ubiquitin-protein ligase SINA-like 6 OS=Arabidopsis thaliana OX=3702 GN=At5g37870 PE=3 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08 Identity = 52/210 (24.76%), Postives = 84/210 (40.00%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy Swiss-Prot
Match: Q9FKD7 (E3 ubiquitin-protein ligase SINA-like 7 OS=Arabidopsis thaliana OX=3702 GN=At5g37890 PE=2 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 4.7e-08 Identity = 55/219 (25.11%), Postives = 81/219 (36.99%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy Swiss-Prot
Match: Q7XA77 (E3 ubiquitin-protein ligase SINA-like 5 OS=Arabidopsis thaliana OX=3702 GN=At1g66660 PE=2 SV=2) HSP 1 Score: 58.5 bits (140), Expect = 7.9e-08 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy Swiss-Prot
Match: Q9C6H2 (E3 ubiquitin-protein ligase SINA-like 3 OS=Arabidopsis thaliana OX=3702 GN=At1g66630 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07 Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy TrEMBL
Match: A0A2P2JA74 (RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.9e-20 Identity = 73/218 (33.49%), Postives = 100/218 (45.87%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy TrEMBL
Match: A0A5E4FRJ3 (PREDICTED: E3 ubiquitin-ligase SINA OS=Prunus dulcis OX=3755 GN=ALMOND_2B009807 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18 Identity = 71/180 (39.44%), Postives = 96/180 (53.33%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy TrEMBL
Match: A0A2R6RKR1 (RING-type E3 ubiquitin transferase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc05900 PE=3 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18 Identity = 72/218 (33.03%), Postives = 99/218 (45.41%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy TrEMBL
Match: A0A067JT13 (RING-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_02506 PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 3.0e-18 Identity = 73/219 (33.33%), Postives = 99/219 (45.21%), Query Frame = 0
BLAST of Spg030770 vs. ExPASy TrEMBL
Match: A0A3N7FR16 (RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_004G072800 PE=3 SV=1) HSP 1 Score: 101.3 bits (251), Expect = 3.9e-18 Identity = 70/218 (32.11%), Postives = 99/218 (45.41%), Query Frame = 0
BLAST of Spg030770 vs. TAIR 10
Match: AT5G37930.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 62.0 bits (149), Expect = 5.1e-10 Identity = 52/223 (23.32%), Postives = 89/223 (39.91%), Query Frame = 0
BLAST of Spg030770 vs. TAIR 10
Match: AT5G37870.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 61.2 bits (147), Expect = 8.7e-10 Identity = 52/210 (24.76%), Postives = 84/210 (40.00%), Query Frame = 0
BLAST of Spg030770 vs. TAIR 10
Match: AT5G37890.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 59.3 bits (142), Expect = 3.3e-09 Identity = 55/219 (25.11%), Postives = 81/219 (36.99%), Query Frame = 0
BLAST of Spg030770 vs. TAIR 10
Match: AT1G66660.2 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 58.5 bits (140), Expect = 5.6e-09 Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 0
BLAST of Spg030770 vs. TAIR 10
Match: AT1G66630.1 (Protein with RING/U-box and TRAF-like domains ) HSP 1 Score: 57.0 bits (136), Expect = 1.6e-08 Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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