Spg030608 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030608
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold6: 30755132 .. 30756177 (+)
RNA-Seq Expression	Spg030608
Synteny	Spg030608

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGTTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTTGTTGTACTGGGCATGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTATCATTACATGTTTATGTTAAACGCTTTAATTGAGCATATTTATACGTTTAAAGGTTTATCACTTGTTTTGACTTTCGGATTTAGAGTTTTAAAGTTAGTCACTCACTAGGCTTCGTAGCTCATTTTTTCAAAATGTTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATCGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTTGGTTGCGATATCTATATCAAGTTATTATCCGAACCAAGTTATGTCAGGGTGGCACCTCGTGTTTGTTGAAAGTTTTTTTTTCAGGGATTCCGCTATGTTCTGTTTCATGTAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAGCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGAAAATTTGGTATCAGAGCAGTTAGCTCCATGGGAAAAGAGACATGGTAGTTAGTGCTAAGAAAAATCCAAGAAGTAAATAGTTAGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGCCAGGACTAG

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAGCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGCCAGGACTAG

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCATGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAGCGTTCAGGAGGGTCAGCAGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGTGAGTCCAGCCAGGACTAG

Protein sequence

MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQIELAEYGPSIVESESSQD

Homology

[Close]

BLAST of Spg030608 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-21
Identity = 62/107 (57.94%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDV 91
           LY+E VH+     +        + EDDV WLHA+FRAK AGGPGG V
Sbjct: 61  LYVEFVHVEMFWLA------GIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg030608 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-21
Identity = 62/107 (57.94%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDV 91
           LY+E VH+     +        + EDDV WLHA+FRAK AGGPGG V
Sbjct: 61  LYVEFVHVEMFWLA------GIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg030608 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--------- 60
           MTEILS RLYGT+CTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ----VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPG 88
               ++++F+V  G    +  DDV WLHA+FR K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg030608 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-18
Identity = 62/124 (50.00%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 1    MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
            MTEILS RL GT+CTQ                 VEIELPVPDTLPTSAE   ++SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESVHIVNVLFSVQ----------EGQQVSLEEDDVRWLHAIFRAKLAGGP-GGDVGS 97
            LY+ESVH+  + +             EG    +  DDV WLHA+FRAK AGGP GG  GS
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTGS 1405

[Close]

BLAST of Spg030608 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-16
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 17  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQ 76
           VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FSV  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ 95
             +  DDV WLHA+FRAK  GGPGG V +++
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVTTLE 184

[Close]

BLAST of Spg030608 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 9.0e-22
Identity = 62/107 (57.94%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDV 91
           LY+E VH+     +        + EDDV WLHA+FRAK AGGPGG V
Sbjct: 61  LYVEFVHVEMFWLA------GIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg030608 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 9.0e-22
Identity = 62/107 (57.94%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 1   MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
           MTEILSPRLYGT+CTQ                 VEIELPVPDTLPTSAESS ++SSTW+E
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  LYIESVHIVNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPGGDV 91
           LY+E VH+     +        + EDDV WLHA+FRAK AGGPGG V
Sbjct: 61  LYVEFVHVEMFWLA------GIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg030608 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.9e-20
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 0


Query: 1   MTEILSPRLYGTMCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI--------- 60
           MTEILS RLYGT+CTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+         
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  ----VNVLFSVQEGQQVSLEEDDVRWLHAIFRAKLAGGPG 88
               ++++F+V  G    +  DDV WLHA+FR K A  PG
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPG 100

[Close]

BLAST of Spg030608 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 62/124 (50.00%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 1    MTEILSPRLYGTMCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVE 60
            MTEILS RL GT+CTQ                 VEIELPVPDTLPTSAE   ++SSTW+E
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   LYIESVHIVNVLFSVQ----------EGQQVSLEEDDVRWLHAIFRAKLAGGP-GGDVGS 97
            LY+ESVH+  + +             EG    +  DDV WLHA+FRAK AGGP GG  GS
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTGS 1405

[Close]

BLAST of Spg030608 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.1e-17
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 17  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFSVQEGQQ 76
           VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++FSV  G  
Sbjct: 94  VEIELPVPDTLPTSAESSESNSSTWLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGST 153

Query: 77  VSLEEDDVRWLHAIFRAKLAGGPGGDVGSVQ 95
             +  DDV WLHA+FRAK  GGPGG V +++
Sbjct: 154 GIVRGDDVCWLHAVFRAKTVGGPGGGVTTLE 184

The following BLAST results are available for this feature:

BLAST of Spg030608 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27998.1	1.9e-21	57.94	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	1.9e-21	57.94	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0062407.1	1.0e-19	55.00	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
TYK08952.1	2.5e-18	50.00	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0062409.1	1.1e-16	54.95	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Spg030608 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030608 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX39	9.0e-22	57.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	9.0e-22	57.94	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5A7V638	4.9e-20	55.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CCC7	1.2e-18	50.00	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V9N3	5.1e-17	54.95	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15...	[more]

BLAST of Spg030608 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030608.1	Spg030608.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity