Spg030363 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg030363
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold6: 25465540 .. 25467063 (+)
RNA-Seq ExpressionSpg030363
SyntenySpg030363
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTCAAACAAATTCCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTTTTAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACACGTCGAGTCCGAAGCTCTATTTGGTATGGTTGGAAGGCTTATTCAATTTCCTACAACTTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAGCAGAGAACCTCGAATCTGTCTTGTCTGTGTTCGGGGCGTTTCTGGACGAATGGGTTGAGAATCTCGTTTTCATTTCTTCCGCTAAGTTGTAGAGTGTTAAAAAATGAAGAGTTAGATGTATAGTACATTAATTTTGGTTTAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAATTTGGAAAAGTAGAATGTGAATGTGGTTCTTAATTCAAGTGTCTAGAATTCATGAGCATGGATGAATAAGACCATCTATGGTTCTAATGCTCGGTTTTGGTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAATGGTTGTTCATGTTTAGACGTTTTCTACGCTTTTTTGTGAATGGTACATGATTTCTATGAACGGTTTCAAACAGAAATTTTGAGCTTAGATTTTCTAACGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTATGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGATGAACTTGCGAGATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACCCTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTCCATAGCTCATTCTTTCAAAATGT

mRNA sequence

ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACACGTCGAGTCCGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTATGA

Coding sequence (CDS)

ATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAAATAAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACACGTCGAGTCCGAAGCTCTATTTGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGCTAAGACTCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTATGA

Protein sequence

MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRSSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAVVSAGRAPL
Homology
[Close]
BLAST of Spg030363 vs. NCBI nr
Match: KAA0054353.1 (uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12390.1 uncharacterized protein E5676_scaffold302G001720 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 63/107 (58.88%), Postives = 69/107 (64.49%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS-- 60
           MQSQPLQNLGA ++    LFGLSY E  +STGFSSKPGG LVFS  LSIL   +  +   
Sbjct: 1   MQSQPLQNLGATVNLWFVLFGLSYPEETRSTGFSSKPGGFLVFSEALSILEVQKSNQKLY 60

Query: 61  SIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAVV 106
            +WPRGN  SLQT EL KT             PLSTLSVLRDND VV
Sbjct: 61  LVWPRGNSLSLQTGELDKTV----------IFPLSTLSVLRDNDVVV 97

[Close]
BLAST of Spg030363 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 6.2e-17
Identity = 66/121 (54.55%), Postives = 71/121 (58.68%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR------ 60
           MQSQPLQNLGA ++    LF LSY EG KSTGFSSKPGG LVFS  LSIL   +      
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVFSDALSILEIHKSNQKLY 60

Query: 61  ---RVR-------SSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAV 106
               VR        S  PRGNR SLQTREL KT             PLSTLSVLRDN+ V
Sbjct: 61  LVLEVRISNLENLKSGMPRGNRLSLQTRELDKTV----------IFPLSTLSVLRDNNVV 111

[Close]
BLAST of Spg030363 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 61/106 (57.55%), Postives = 68/106 (64.15%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR-RVRSS 60
           MQSQPLQNLGA ++    LF LSY EG KSTGFSSKPGG LV S  LSIL   +   +  
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLY 60

Query: 61  IWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAVV 106
           + PRGNR SLQT EL KT              LSTLSVLRDN+AV+
Sbjct: 61  LGPRGNRLSLQTGELDKTV----------IFSLSTLSVLRDNNAVI 96

[Close]
BLAST of Spg030363 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 61/114 (53.51%), Postives = 67/114 (58.77%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVR--- 60
           MQS PL+NLGA ++    LFGLSY EG KSTGFSSKPG  LVFS  LSIL   +  +   
Sbjct: 485 MQSLPLENLGATVNLWFVLFGLSYQEGTKSTGFSSKPGRFLVFSDALSILKVPKSNQKLY 544

Query: 61  ------SSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAVV 106
                  S  PRGN+ SLQT EL KT             PLST SVL DNDAVV
Sbjct: 545 LDIESGKSGKPRGNKPSLQTGELDKTV----------IFPLSTFSVLHDNDAVV 588

[Close]
BLAST of Spg030363 vs. NCBI nr
Match: TYK21916.1 (hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 6.4e-14
Identity = 64/129 (49.61%), Postives = 72/129 (55.81%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS-- 60
           MQS+PLQNL A ++    LFGLSY EG KST FSSK GG LVFS  LSIL   +  +   
Sbjct: 1   MQSKPLQNLVAIVNLLFVLFGLSYLEGTKSTRFSSKLGGFLVFSDALSILEVHKSNQKLY 60

Query: 61  -----------SIWPRGNRSSLQTRELAKT------PEAIWYRVHTG-----YIPLSTLS 106
                       I PRGNRSSLQT EL  T       E +  R++          LSTLS
Sbjct: 61  LDIESGKSGKWDIMPRGNRSSLQTEELDNTISIDYMTEILSLRLYGTVCTHVIFSLSTLS 120

[Close]
BLAST of Spg030363 vs. ExPASy TrEMBL
Match: A0A5A7UEC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001720 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.1e-19
Identity = 63/107 (58.88%), Postives = 69/107 (64.49%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS-- 60
           MQSQPLQNLGA ++    LFGLSY E  +STGFSSKPGG LVFS  LSIL   +  +   
Sbjct: 1   MQSQPLQNLGATVNLWFVLFGLSYPEETRSTGFSSKPGGFLVFSEALSILEVQKSNQKLY 60

Query: 61  SIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAVV 106
            +WPRGN  SLQT EL KT             PLSTLSVLRDND VV
Sbjct: 61  LVWPRGNSLSLQTGELDKTV----------IFPLSTLSVLRDNDVVV 97

[Close]
BLAST of Spg030363 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.0e-17
Identity = 66/121 (54.55%), Postives = 71/121 (58.68%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR------ 60
           MQSQPLQNLGA ++    LF LSY EG KSTGFSSKPGG LVFS  LSIL   +      
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVFSDALSILEIHKSNQKLY 60

Query: 61  ---RVR-------SSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAV 106
               VR        S  PRGNR SLQTREL KT             PLSTLSVLRDN+ V
Sbjct: 61  LVLEVRISNLENLKSGMPRGNRLSLQTRELDKTV----------IFPLSTLSVLRDNNVV 111

[Close]
BLAST of Spg030363 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17
Identity = 61/106 (57.55%), Postives = 68/106 (64.15%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTR-RVRSS 60
           MQSQPLQNLGA ++    LF LSY EG KSTGFSSKPGG LV S  LSIL   +   +  
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLY 60

Query: 61  IWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAVV 106
           + PRGNR SLQT EL KT              LSTLSVLRDN+AV+
Sbjct: 61  LGPRGNRLSLQTGELDKTV----------IFSLSTLSVLRDNNAVI 96

[Close]
BLAST of Spg030363 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 61/114 (53.51%), Postives = 67/114 (58.77%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVR--- 60
           MQS PL+NLGA ++    LFGLSY EG KSTGFSSKPG  LVFS  LSIL   +  +   
Sbjct: 485 MQSLPLENLGATVNLWFVLFGLSYQEGTKSTGFSSKPGRFLVFSDALSILKVPKSNQKLY 544

Query: 61  ------SSIWPRGNRSSLQTRELAKTPEAIWYRVHTGYIPLSTLSVLRDNDAVV 106
                  S  PRGN+ SLQT EL KT             PLST SVL DNDAVV
Sbjct: 545 LDIESGKSGKPRGNKPSLQTGELDKTV----------IFPLSTFSVLHDNDAVV 588

[Close]
BLAST of Spg030363 vs. ExPASy TrEMBL
Match: A0A5D3DE96 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00570 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.1e-14
Identity = 64/129 (49.61%), Postives = 72/129 (55.81%), Query Frame = 0 

Query: 1   MQSQPLQNLGAKLSTSGFLFGLSYTEGNKSTGFSSKPGGSLVFSGVLSILGCTRRVRS-- 60
           MQS+PLQNL A ++    LFGLSY EG KST FSSK GG LVFS  LSIL   +  +   
Sbjct: 1   MQSKPLQNLVAIVNLLFVLFGLSYLEGTKSTRFSSKLGGFLVFSDALSILEVHKSNQKLY 60

Query: 61  -----------SIWPRGNRSSLQTRELAKT------PEAIWYRVHTG-----YIPLSTLS 106
                       I PRGNRSSLQT EL  T       E +  R++          LSTLS
Sbjct: 61  LDIESGKSGKWDIMPRGNRSSLQTEELDNTISIDYMTEILSLRLYGTVCTHVIFSLSTLS 120

The following BLAST results are available for this feature:
BLAST of Spg030363 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0054353.11.5e-1858.88uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa] >TYK12... [more]
KAA0058280.16.2e-1754.55uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
TYK11835.11.4e-1657.55uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
KAA0064296.13.4e-1553.51putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
TYK21916.16.4e-1449.61hypothetical protein E5676_scaffold494G00570 [Cucumis melo var. makuwa][more]
BLAST of Spg030363 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg030363 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UEC17.1e-1958.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UT173.0e-1754.55CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3CJX36.7e-1757.55CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7VD331.6e-1553.51Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5D3DE963.1e-1449.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg030363 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg030363.1Spg030363.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity