Spg030361 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg030361
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold6: 26232580 .. 26234879 (+)
RNA-Seq Expression	Spg030361
Synteny	Spg030361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCCCACAATCCTCCCTTTAAGATTACTCTAGAGAATACCAGTGCAATTCTAGTGGTGGTGTTCTTGGTGAATTTTGGAGAGAAATCCAGCAGAGATCGTGATTTCGGAGCTATTGTCTTTTACAGAAAAGATCCACGGAGTTGGTGGAGAATTCGGTCAAGTCACAACGAAGGTTTGTTTTCTTAATCCTTTCTCTTCTGTAGATATTCATTAATTAAAATAGGAATTTAATTCTCTGTATTTAGCATGCTTAACCTAGTTTTACAGTAGATAAATTAGATTATATCTTTGTACAATTTTTGCCAGTGTACTGGTATTTTATTTCATAATTAAAATTTGAGTAAAGGTCTGATAATTTTTCCGCCGCGCTTGGGATTTAAACCCAGCAAGGTTAACATGTTTTGATAAAAATTACATGTTCTAACCTCTTTCCTCACTATTCTTTCATGAGAATTAATGTATGAATGCAGGGAAATGACATTTGAGTTAACAGGGGCTTGAGGTCGAGGCCGACCCTAGCCTCTTCCCTCATTTTCCTTTTGCAAGAACTATGTATGAATGTAGGGAGCTAATATTTAAGCTAATAGGGGCTTAAGGTCGAGGTCGACCCTAGCCTCTTCCCTAATTTTTCTTTTGCAAAAACTAATGTTTTCATGTAGGAACTCAAAATGATCAATGACATGAAAGGTGGTCGAGGCCGACCCTATGGTCTTACCACGTGTGCCACGTAAATGGCTAAACAAAAAAAAGTACTTACACAAGGGGCTTCAAAGTTAGGGAATTGACTGAATGTCGTTCAGATATGAAGGAATGAAAATGAGAGGTCCAAAAGAAAGGCACAAGGCTTTGGACTCGCTCCAAACCTCAACCTTGGCCTCATTCCGAGGCCAGGGTTGAGGCTCGTCCAACCGTTCTTACAATCCCTCACCTTTTTTCATCTTTTATCTTACCTAACCCCTATTCAGGGAGTCTTTGTTTTGTCTACTTTCTTCCTATCTTGCAGGATAACGAGAAATCCACACATGAGTCAGCACAAGACGAAGTTATACTCAATTTAAGAGTGGGGGCTTAATGTTATAGACTAGGACAACACAACACCAGCCCAAGGACACGAACAGGAAGCGGACCCCGGAGGAGAGGTAGACCAAAAGGAATTGGGCAAAGGCCTAATACCATGGCCTCGACCTCAGCCTGGTTGGCCCACTTCGGTGGGTCGAGTCCTCTCCCCTCCGCTCGGTCCCTAGTGTCCTGGTCCAGTCCAATTCAACTTGGTTCAACCCGAATCTGTCTTCAGACACCTAGAAACCCTAAAAAGAAAATAGGTATATAAACCCTTCTTCAACCCTAAAGAAGGGATCCCGAGCTCTTTTCTCTGAACTCTACTCCTCCTCTTGCTCTCTCATGTTACTCCTTGTTGACTTGAGCATCGGAGGCTGTGTGGCAAGCACCGCACCAGTGTGCAGGTTTCCTTGTCTTGCAGGCTACGTCTTCTCCCCTTCAAACAAATTTATCTTGGTGGCACGTGAAGGTCAGGTGAGTTCTCCCTGTTCGGATTTTGACATCAACAATTGTAATTTTTAAAATTTAGTTTTAATTGATAATTTTGTATTTTTTTTCTTCAAATTGTGATAATTGAAAAGTTATTACCTTAATTATTAATTTGTTATAATTTAATGAATTTTACAACATTATTACTATTAAACTTTTAAATTAAAAAAAAAAAAGTTAAATGTTGTAAATTTAGAAGGTTATCCAAATTGAAGCTGGGAATAATTGTGAGGGCACAACCCAATCATATACATCGCATGGGTGGGATGAAATGGCAAAGAAAGAAAGCTCCACGTGGAAGGCATAGAACAAGCTCAAGAAAGACACGTAGTTATGACTGATTATTGCATCTTTATCAGCTTCACTCCAACAAACTTTTGACTTCACAGTCACAGAAGATGAAGATGAAGGTGAGGATGTGTACGCATATTTTGGATGGTAGGATCATCTTCAAGCCAAATCCATTTCCAGTGATTGAGAATCATTGGCCATGTCTTTTGGGTCAGCGCTATGCCAAAGCAAGTAAAAAGGACGACGACGGCGGAGATGAAAAGGCCGCTGATCAGAGATCAAAGACCGACAGAGCTCCGTCGATGGCGGAGGAGTTCGATAGGGTGGCGGCTGAGAAGCAGCTGAAGGAGGCAGCGGAGGAGGAAGAGGTGGCTGATCAGAGGGTCGGCAAGGAATCTGAAGGCTTGGATAAAACTGCCTTAGACCAAGGGCCTGGCTACCGCCCTTGTAGCTGA

mRNA sequence

ATGGGATCCCACAATCCTCCCTTTAAGATTACTCTAGAGAATACCAGTGCAATTCTAGTGGTGGTGTTCTTGGTGAATTTTGGAGAGAAATCCAGCAGAGATCGTGATTTCGGAGCTATTGTCTTTTACAGAAAAGATCCACGGAGTTGGTGGAGAATTCGGTCAAGTCACAACGAAGGCTACGTCTTCTCCCCTTCAAACAAATTTATCTTGGTGGCACGTGAAGGTCAGCTTCACTCCAACAAACTTTTGACTTCACAGTCACAGAAGATGAAGATGAAGGTGAGGATGTGTACGCATATTTTGGATGGTAGGATCATCTTCAAGCCAAATCCATTTCCAGTGATTGAGAATCATTGGCCATGTCTTTTGGGTCAGCGCTATGCCAAAGCAAGTAAAAAGGACGACGACGGCGGAGATGAAAAGGCCGCTGATCAGAGATCAAAGACCGACAGAGCTCCGTCGATGGCGGAGGAGTTCGATAGGGTGGCGGCTGAGAAGCAGCTGAAGGAGGCAGCGGAGGAGGAAGAGGTGGCTGATCAGAGGGTCGGCAAGGAATCTGAAGGCTTGGATAAAACTGCCTTAGACCAAGGGCCTGGCTACCGCCCTTGTAGCTGA

Coding sequence (CDS)

ATGGGATCCCACAATCCTCCCTTTAAGATTACTCTAGAGAATACCAGTGCAATTCTAGTGGTGGTGTTCTTGGTGAATTTTGGAGAGAAATCCAGCAGAGATCGTGATTTCGGAGCTATTGTCTTTTACAGAAAAGATCCACGGAGTTGGTGGAGAATTCGGTCAAGTCACAACGAAGGCTACGTCTTCTCCCCTTCAAACAAATTTATCTTGGTGGCACGTGAAGGTCAGCTTCACTCCAACAAACTTTTGACTTCACAGTCACAGAAGATGAAGATGAAGGTGAGGATGTGTACGCATATTTTGGATGGTAGGATCATCTTCAAGCCAAATCCATTTCCAGTGATTGAGAATCATTGGCCATGTCTTTTGGGTCAGCGCTATGCCAAAGCAAGTAAAAAGGACGACGACGGCGGAGATGAAAAGGCCGCTGATCAGAGATCAAAGACCGACAGAGCTCCGTCGATGGCGGAGGAGTTCGATAGGGTGGCGGCTGAGAAGCAGCTGAAGGAGGCAGCGGAGGAGGAAGAGGTGGCTGATCAGAGGGTCGGCAAGGAATCTGAAGGCTTGGATAAAACTGCCTTAGACCAAGGGCCTGGCTACCGCCCTTGTAGCTGA

Protein sequence

MGSHNPPFKITLENTSAILVVVFLVNFGEKSSRDRDFGAIVFYRKDPRSWWRIRSSHNEGYVFSPSNKFILVAREGQLHSNKLLTSQSQKMKMKVRMCTHILDGRIIFKPNPFPVIENHWPCLLGQRYAKASKKDDDGGDEKAADQRSKTDRAPSMAEEFDRVAAEKQLKEAAEEEEVADQRVGKESEGLDKTALDQGPGYRPCS

Homology

[Close]

BLAST of Spg030361 vs. NCBI nr
Match: KAG6596946.1 (hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-11
Identity = 55/113 (48.67%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 105 RIIFKPNPF------PVIENHWPCLLGQRYAK--ASKKDDDGGDEKAADQRSKTDRAPSM 164
           RIIF  NP         ++ HWP LL +RY K    +KD     EK  D RS TDRAPSM
Sbjct: 10  RIIFNLNPIHPLLACSTVKGHWPSLLARRYDKPRTDEKDHHRSAEKGTDHRSNTDRAPSM 69

Query: 165 AEEFDRVAAEKQLKEAAEEEEVADQRVGKESEGLDKTA----LDQGPGYRPCS 206
           AEEF+R+A EK LKEA            K+SE   KTA    LD GP YRPCS
Sbjct: 70  AEEFNRIADEKHLKEAPGRSS------DKQSETSQKTASDQNLDDGPNYRPCS 116

[Close]

BLAST of Spg030361 vs. ExPASy TrEMBL
Match: A0A0A0L2C8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073950 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.3e-04
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 121 PCLLGQRYAKASKKDDDGGDEKAADQRSKTDRAPSMAEEFDRVAAEKQLKEAAEEEEVA- 180
           P L  +RY K SK +     E +  +RSK +RAPS AEEF+R+A EKQ K+  EEE  A 
Sbjct: 89  PSLFPRRYGKPSKDE----AEHSGGERSKAERAPSTAEEFNRMATEKQSKDHQEEEVDAV 148

Query: 181 --DQRVGKESE-GLDKT-----ALDQGPGYRPCS 206
               +  KESE  ++K+      +++GP YRPCS
Sbjct: 149 HGRDKFAKESEAAMEKSHDPNNHINKGPNYRPCS 178

[Close]

BLAST of Spg030361 vs. ExPASy TrEMBL
Match: A0A1S4DY64 (uncharacterized protein LOC107990980 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107990980 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.1e-04
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 118 NHWPCLLGQR--YAKASKKDDDGGDEKAADQRSKTDRAPSMAEEFDRVAAEKQLKEAAEE 177
           +++P  L  R  Y K   KD+    E++  +RSK +RAPS AEEF+R+A EK+ K+  EE
Sbjct: 64  DYFPASLFPRRCYGKPISKDE---AERSGGERSKAERAPSTAEEFNRMATEKESKDQEEE 123

Query: 178 EEVADQRVGKESEGLDKTA-----LDQGPGYRPCS 206
            +  D +V KES  + K++     +++GP YRPCS
Sbjct: 124 VDEHD-KVTKESGEMGKSSDPNNHINKGPNYRPCS 154

The following BLAST results are available for this feature:

BLAST of Spg030361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596946.1	1.1e-11	48.67	hypothetical protein SDJN03_10126, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg030361 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2C8	5.3e-04	43.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G073950 PE=4 SV=1	[more]
A0A1S4DY64	9.1e-04	41.05	uncharacterized protein LOC107990980 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Spg030361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 156..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg030361.1	Spg030361.1	mRNA