Spg029223 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg029223
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold12: 36214556 .. 36219281 (-)
RNA-Seq Expression	Spg029223
Synteny	Spg029223

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTGAAATATGGGGATTGTAAGAACATTGTTCGAAGCGTGTGGCAGGAATGTGGTCATGGAAGGAATATCTCAATTATGGATAAAACTAGGACTTGTCTGGAGCGCCTAGGAAACTGGAGCAGATATAGGTACGGAGGTTCTATGAGAGGTGCGATATCCAAAAAGGAAAGGGAGATCCAGAGGCTTGCAGGAAGCAATGAGGTGGACAGGTTGCAGTTGATTCTCGAGATGGAAAAAGATTTAGAGGTGTTATTAGAAGATGATGAAATTTACTGGCGTCAAAGCGAATGTGAGGAGTGGTTGCAATGAGGAGATCGAAACACGAAATGATTCCATATGAGGGCAAATCACAGAAGGAAAGTTAATAACATCAAAGGTTTGTTTGACGAAAGAAATCAGTGGTCAGAAGATGAATCTCAGATGGAATCCATAGCAAATCACTACTTCCAAAATCTCTTCAGAACATCTACCCCTGACAGAAATGCTATAGATCGTGTTATGGATTGTATCCCATCTAGTATCACTGGGGAGCAGAATGCTGAACTTATTAAAAAATTCACTAAAGAAGAGATCACGACAGTAGTGAAGAGTATGGCTCCTACGAAAGCTCCTGGTCCAGAAGGTATTCAGGCAATTTTTTACCAAAAATATTGGGATATAGTAGGCGAGGACACTTGTAAATTCTGTTGGCAGATTCTAAATGAAGGGGCTTCTATAAGTCAGATCAATAGAACCTATATTGCTTTGATTCCAAAAGTTAAAGACCCTAAGGCCATGAAGGATTTCAGACCTATTAGCCTTTGCTCAGTGCTGTATAAAATCATCGCCAAGACACTGGCAAATAGGTTGAAAAAAGTCCTTGATAAGATTATATCTCCTAACCAATCAACTTTTGTTCCTGGAAGACTTATCACAGTGATAGCGAGCATAGCTAGCTACTTTTACTTATTTAATTTAGCTAGTCTTTTATGATTTTTGGGCCATTTTATTGTGCTTTATTGTTTATTTTGTAGGAAAGCGATGATTAGAGCTAAAACGTGGAATTGGAGTTAATCGGGTGTTCGGGACGTGAAAATATGCCAAAGAACCGGAAAGTTCAAGCAACAAGGAGCCAAGAGAGGGCATTCTGCCCATCAGCGTCGAGACGCCACTCTTGGAGGGTCTCGACGCTGGTTTTCCTTAATTAGAAGAGGCGGCAGCGCGACGCTGTGACAATAGCGTCTCGACGCTACCGTTATTTCCATTCCAGACGCGCGTGTTTTAGAGGCAGCGTCGAGACGCTGTCTGGATAGCGTCTCGACGCTACGACGAAAAATCAGTATTTATAGTTCTTTTCGGCTAGGTTTTTGGGGGAACTCTTTTGGGATACTTTTGGAGCCGTAAAACAGAGGAGAAAACAGAGGATTGAGGCTGAACAAGAGGGAGAAAAGCGGAAATCAACCCATTGTTCGTGGGGATCGTGACGGGGACGTTCGGTCTCGGCCTACATTGAGTTTTCTTTTCCCTTTCCTTTTCTTAGCGAGATTTTATGGCTTTATTATGTTTAGTTGAGCTTGTAATACAAATCATGAGTAGCTAAACTTGTAGCTTAGGGATTGATGTAGTTGATTGAGTTTATGGATTGATTTATGGTTTAAGTTGTGCAATGTTTATTATGTTTGTAATCTTGATTTAATGCTTTCAATTGATTGGCCATTAGTTGGATGATTTATGTTTTGAATCTAGCTCGGGAGAGGGGATTTGATATAGACATACTCAAGATTGCATGACTAAAGTTTATTTTCTAATTCGTGACGGTTTTAGATTAACTTTAGAATTGGTCAAAAGATCTCATTGCCTTGCATATTAATAAACTTAGATAGGGATATCAAGTTGGTTAATTTGCATGAGAATCAATTATACTCGGGAGAGGTAGTTGTGATTAAAGGGTCTTTGGCTCATAATTTCATTGTGCATAATAACTTACTCCTTAAAATCAATCCTAGACCAAATCGGCGAAATCAATTCCCTAAGTGTTTTTCCAATTGAATTTCCACTTTTTACTTGCTTTGATTTAGTTTTCATATCATTCACTCACTACTTTTTGATCCCTAAATAAAATTGAGCAAGATAATTCACAATACTTGATTTGCTTAAAAATCCAATCCAGAGGACGACACTCGTTTATACGAACACTTTATTATTACTTGACCCGTGCGCTTGCGGTAAGGAAAATTCCACATCACACAGACAATGCCATTTTGGGGTTTGAATGTATCCATGCGATCAAGAGTAAAAGATTGGGAAAGGTGGGAAACTGGACATGAGCAAAGCTTATGATAGGGTCGAATGGGTTTATATCCGGAGGATTATGGGCAAGATGGGATTCAGTAATACCTGGATAAATCTGATAATGGGATGTATTGAATCTGTGAGTTTTCAAGTGCTGCTGAATTGTACACCTCTCTCTACTTTCCATCCGACCAGGGGGATACATCAAGGCGACCCTTTATCTCCATATCTTTTTCTTATTTGTGCAGAAGGCCTTTCGGGTCTTTTAAATGCAGCAGAAAGAGATAAGGACATCACAGGTTTGAGTATCACTAAACACTGCCCTTCTATTTCTCAATTGTTTTATGCTGATGACAGCTTTCTATTTTTCAAAGCTACTAATAAAGATTGCAGGTTAGTGAAAAGAAGCCTAGAGATCTATGAAAAGGCATCGGGTCAAACGGTGAACTTTGAGAAATCTATGTTCAAGTGTGGAGAAGATTCAAACTGTGAAGGATAATCTTGGGGTTTCTCATTCTGGGACATTGGGTCAATATTTAGGTCTCCCTAGCCAGAATGCCAGAAACAAAAAGGAGATCTTCAACCATATTAAAGATAGGGTTTGGAGAACACTTCAAGGATGGAAGGGCAAATTTTTCTCTGCGACAGGAAGGGAAGTTTTAATTAAATCAGTGGCTCAGGCCATCCCTAACTATGCTATGAGTTGCTTAAAGTTTCCGATAAGCCTCTGTTACGATCTTAATTCTTTGTGTGCTAGGTTTTGGTGGGGAGGCTCTGAAGAGGGTAATAAAATCCACTGGCAAAGCTGGAGGAAGCTATGTATTAACAAAGTTCTTGGCGGCATGGGCTTTAAGGACCTCACCATCTTTAATCAAGCAATGCTAGCTAAACAGAGCTAGAGGCTACTCAAATTCCCTAATAGCCTGTTGGCTAGGGTGCTTAGGGGAAGATACTTCAAAACCAAAAATTTCTTACAAGCATCTATGGGCAATAACCCTTCCTATGTTTGGAGGAGTATACTTTGGGGTCGTGAGCTGTTCAAGAAGGGTTTTCGATGGAGGGTTGGTAGTGGTGTTAGTATTGAAGCCTCCTCAGACCCTTGGATTCCAAGGGAGGGATCATGTTATCCGATTGCCCCTCACCAGCATACTCACAATCTCACGGTGGCTCATCTAATCCATACAAGTGGAATTTGGAATGAAAGGCTGATCAGAGACCTTTATATTCAACAGGATGCCAACTTGATTTTGAATATCCCCTGAACCCACAACAAAAGGAGGATGTAATCATATGGAATTACGATCCCAAAGGACAATTCACGGTCAAAAGTGCGTATAGGTTAGGGATGAACATTCAAAATCAACCAATGACCTCTGTTTCCAACGCTAGCCAACAAATTTCCTTATGGAAAAACTACTGGAAAATTCCACTCCCCTCAAAAATCAAGATCTGTGGCTGGCGAATCTACAAGGACATCCTCCCTACTCTTTCTAATTTATATATGAAAGGAACTGATCTAAAAACAGTCTGTCGTCTTTTATGCAGGGAGCGGAAGGAGACATCTTCCCACCTTTTTTGGGGATGTAAAGCCACAAGGGGTATCTGGCCTAAATACTTTCACCCATCTGACTTAATCTGTTTGAATGGCAGGGAAGATTGGGAGCCAAAGGTTTTTCTAGAAAGCATTTGGAGCAGAATGGGATCGGAAGAAGGAGTGATAGAGAAGATGCACAAAAGCTTAATCATTTGCTGGCAGATTTGGAATTACCGAAACCACATACTTCACAACCAGATTCAACCAGATTTTAACACATTGCAGAACCAAATTGCTAACTACATGGAGGAATTGAAAAGATCAAGTGGTCCGAATCAGAGTATACCTCTTCCTGCTACGATCTTATCACGTACGCCAGGTTGGAGTCGTCCTCCAAGTGGGATATGGAAGCTAAACTGTGATGCGGCTTGGTCTGAAGATCTTCAACGTGGAGGAATCGGTTGGATCCCTCGTCAGGCGGACGAAAATCCCATTAGCGCAGGTCACCGGCACATTAACAGACCATGGATAATCTCATGGCTGGAGTCTTTGGCAATTAGCGAGGGTCTTCGGCATCTACCAGAAGACTCGCCTCCCGTCCAAGTTGAAAGCGATGCTCTTCACGTCACACAGCTCCTAAATGGCAGAGAGGAGGATGAATCGAAAGTGCAACTTTTCATTGAGGAAGCAAAATCCCTGATCTCCAAATCTAACATCGAGGGCATTTATCAAGTGAAGAGGATTCACAATCAGATGGCTCACAGCCTGGCTAGAAAGACTTGTTTAAGTGGCAGTTCTGATAGTTGGGCCACTTTATTTCCAAGTTGGTTACTCCAATTAAATTATTCTGACATAGGTGGTTTAAATACCAATAGTGGGGGTCCTGTCCCTCAACCATTGGTTCCTTTACTCTAA

mRNA sequence

ATGGGATCGGAAGAAGGAGTGATAGAGAAGATGCACAAAAGCTTAATCATTTGCTGGCAGATTTGGAATTACCGAAACCACATACTTCACAACCAGATTCAACCAGATTTTAACACATTGCAGAACCAAATTGCTAACTACATGGAGGAATTGAAAAGATCAAGTGGTCCGAATCAGAGTATACCTCTTCCTGCTACGATCTTATCACGTACGCCAGGTTGGAGTCGTCCTCCAAGTGGGATATGGAAGCTAAACTGTGATGCGGCTTGGTCTGAAGATCTTCAACGTGGAGGAATCGGTTGGATCCCTCGTCAGGCGGACGAAAATCCCATTAGCGCAGGTCACCGGCACATTAACAGACCATGGATAATCTCATGGCTGGAGTCTTTGGCAATTAGCGAGGGTCTTCGGCATCTACCAGAAGACTCGCCTCCCGTCCAAGTTGAAAGCGATGCTCTTCACGTCACACAGCTCCTAAATGGCAGAGAGGAGGATGAATCGAAAGTGCAACTTTTCATTGAGGAAGCAAAATCCCTGATCTCCAAATCTAACATCGAGGGCATTTATCAAGTGAAGAGGATTCACAATCAGATGGCTCACAGCCTGGCTAGAAAGACTTGTTTAAGTGGCAGTTCTGATAGTTGGGCCACTTTATTTCCAAGTTGGTTACTCCAATTAAATTATTCTGACATAGGTGGTTTAAATACCAATAGTGGGGGTCCTGTCCCTCAACCATTGGTTCCTTTACTCTAA

Coding sequence (CDS)

ATGGGATCGGAAGAAGGAGTGATAGAGAAGATGCACAAAAGCTTAATCATTTGCTGGCAGATTTGGAATTACCGAAACCACATACTTCACAACCAGATTCAACCAGATTTTAACACATTGCAGAACCAAATTGCTAACTACATGGAGGAATTGAAAAGATCAAGTGGTCCGAATCAGAGTATACCTCTTCCTGCTACGATCTTATCACGTACGCCAGGTTGGAGTCGTCCTCCAAGTGGGATATGGAAGCTAAACTGTGATGCGGCTTGGTCTGAAGATCTTCAACGTGGAGGAATCGGTTGGATCCCTCGTCAGGCGGACGAAAATCCCATTAGCGCAGGTCACCGGCACATTAACAGACCATGGATAATCTCATGGCTGGAGTCTTTGGCAATTAGCGAGGGTCTTCGGCATCTACCAGAAGACTCGCCTCCCGTCCAAGTTGAAAGCGATGCTCTTCACGTCACACAGCTCCTAAATGGCAGAGAGGAGGATGAATCGAAAGTGCAACTTTTCATTGAGGAAGCAAAATCCCTGATCTCCAAATCTAACATCGAGGGCATTTATCAAGTGAAGAGGATTCACAATCAGATGGCTCACAGCCTGGCTAGAAAGACTTGTTTAAGTGGCAGTTCTGATAGTTGGGCCACTTTATTTCCAAGTTGGTTACTCCAATTAAATTATTCTGACATAGGTGGTTTAAATACCAATAGTGGGGGTCCTGTCCCTCAACCATTGGTTCCTTTACTCTAA

Protein sequence

MGSEEGVIEKMHKSLIICWQIWNYRNHILHNQIQPDFNTLQNQIANYMEELKRSSGPNQSIPLPATILSRTPGWSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINRPWIISWLESLAISEGLRHLPEDSPPVQVESDALHVTQLLNGREEDESKVQLFIEEAKSLISKSNIEGIYQVKRIHNQMAHSLARKTCLSGSSDSWATLFPSWLLQLNYSDIGGLNTNSGGPVPQPLVPLL

Homology

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BLAST of Spg029223 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-26
Identity = 76/217 (35.02%), Postives = 111/217 (51.15%), Query Frame = 0


Query: 9   EKMHKSLIICWQIWNYRNHILHNQIQPDFNTLQNQIANYMEELKRSSGPNQSIPLPATIL 68
           E +   LI  W IWN+RN+++       F+T+  Q+  ++ E    S    S+ +    L
Sbjct: 8   EDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQS--ETSLSMLHKTL 67

Query: 69  SRTPGWSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINRPWIISWLE 128
           +    W  PP  IW LN DA+WS+   RGGIGWI R  D + + AG+R +     +  LE
Sbjct: 68  NNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLE 127

Query: 129 SLAISEGLRHLPEDS--PPVQVESDALHVTQLLNGREEDESKVQLFIEEAKSLISKSNIE 188
           + AI EGLR+L       P+ +E+D+  V  LLN + ED +K    +EE  +L     I 
Sbjct: 128 ASAILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEIL 187

Query: 189 GIYQVKRIHNQMAHSLARKTCLSGSSDSWATLFPSWL 224
              +V R  N  AHSLA++  +   S  W   FP+WL
Sbjct: 188 AFAKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

[Close]

BLAST of Spg029223 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 2.4e-21
Identity = 71/206 (34.47%), Postives = 104/206 (50.49%), Query Frame = 0


Query: 9   EKMHKSLIICWQIWNYRNHILHNQIQPDFNTLQNQIANYM-------EELKRSSGPNQSI 68
           E+  +S+II WQIW  RN  +   + P+   +Q  I  Y+         LK  S  N+ +
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKS-TNKDL 66

Query: 69  PLPATILSRTPG-WSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINR 128
            L   I   T   W  P S  WKLN +AAW  D   GGIGWI R      I A  R I  
Sbjct: 67  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 126

Query: 129 PWIISWLESLAISEGLRHL-PEDSPPVQVESDALHVTQLLNGREEDESKVQLFIEEAKSL 188
              I++LE +AI EGLR +  E   P+ +ESD+L    LL+ + +D++++   +EE   +
Sbjct: 127 ERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQM 186

Query: 189 ISKSNIEGIYQVKRIHNQMAHSLARK 206
           +    I  +  + R  N++AH LAR+
Sbjct: 187 MKDMEIVSMRHISREANKVAHGLARR 211

[Close]

BLAST of Spg029223 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 6.0e-20
Identity = 68/213 (31.92%), Postives = 102/213 (47.89%), Query Frame = 0


Query: 9   EKMHKSLIICWQIWNYRNHILHNQIQPDFNTLQNQIANYM------EELKRSSGPNQSIP 68
           E+  +S+II WQIW  RN  +   +  +   +Q  I  Y+      +   +    N+ + 
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLH 66

Query: 69  LPATILSRTPG-WSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINRP 128
           L   I   T   W  P S  WKLN DAAW  D   GGIGWI R      I A  R I   
Sbjct: 67  LIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTE 126

Query: 129 WIISWLESLAISEGLRHL---------PEDSPPVQVESDALHVTQLLNGREEDESKVQLF 188
             I++LE +AI EGLR +          E   P+ +ESD+L    LL+ + +D++++   
Sbjct: 127 RNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWL 186

Query: 189 IEEAKSLISKSNIEGIYQVKRIHNQMAHSLARK 206
           +EE   ++    I  +  + R  N++AH LAR+
Sbjct: 187 LEEIWQMMEDMKIVSMRHISREANKVAHDLARR 219

[Close]

BLAST of Spg029223 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 4.8e-17
Identity = 59/200 (29.50%), Postives = 97/200 (48.50%), Query Frame = 0


Query: 10  KMHKSLIICWQIWNYRNHILHNQI-QPDFNTLQNQIANYMEELKRSSGPNQSIPLPATIL 69
           K    L++ W IW YRN I+H+ I QP    ++    + + E   + G N  + +    L
Sbjct: 15  KRQSGLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGN--LNMEDKNL 74

Query: 70  SRTPGWSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINRPWIISWLE 129
            RT GW+ P   +WKLN DA W + L  GG+GWI R ++        R I    + +  +
Sbjct: 75  PRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSE-------GRFIMAECLKALSQ 134

Query: 130 SLAISEGLRHLPEDSPPVQVESDALHVTQLLNGREEDESKVQLFIEEAKSLISKSNIEGI 189
           SL +  G++        +++ESD L V  ++N      ++V L +E+    +    IEG 
Sbjct: 135 SLTLEAGIK--------IEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGF 194

Query: 190 YQVKRIHNQMAHSLARKTCL 209
             +    N +AH +AR+ C+
Sbjct: 195 KHLPMKANGVAHGIARRACV 197

[Close]

BLAST of Spg029223 vs. NCBI nr
Match: KAF4360260.1 (hypothetical protein F8388_020551 [Cannabis sativa] >KAF4393916.1 hypothetical protein G4B88_025885 [Cannabis sativa])

HSP 1 Score: 98.6 bits (244), Expect = 8.1e-17
Identity = 64/229 (27.95%), Postives = 105/229 (45.85%), Query Frame = 0


Query: 8   IEKMHKSLIICWQIWNYRNHILHNQIQPDFNTLQNQIANYMEELKRSSGPNQSIPLPATI 67
           + +   ++ I W IW  RN          +N L       + +   S+ P  S P+   +
Sbjct: 163 MNEFEDAIKIMWAIWENRNR--------KWNNLHVMNGAQLLDWVFSAYPGSSTPVKNDM 222

Query: 68  -----LSRTPGWSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINRPW 127
                LS+T  W RPP+G   +NCDAA +      G G+I R  D   + AG  + NR  
Sbjct: 223 TTNMELSKTTHWIRPPAGYIAVNCDAAMNSGAAGIGTGFIWRNWDGKLLIAGMNYSNRCC 282

Query: 128 IISWLESLAISEGLRHLPEDS-PPVQVESDALHVTQLLNGREEDESKVQLFIEEAKSLIS 187
            +   E+ AI E L ++P  +  P++++SD  H+   +  ++   + V   I + +  + 
Sbjct: 283 SVDMAEAWAILEALNNMPNTTDSPMEIQSDCKHLVDKIMNQDNHLTAVNTIIHQIRMQME 342

Query: 188 KSNIEGIYQVKRIHNQMAHSLARKTCLSGSSDSWATLFPSWLLQLNYSD 231
           K N   I  V R +N+ AH LARK   + ++  +   FP WL Q   +D
Sbjct: 343 KLNCNSIVHVNRNNNECAHMLARKCLATKTTQIFTHPFPRWLAQFCTAD 383

[Close]

BLAST of Spg029223 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.5e-27
Identity = 76/217 (35.02%), Postives = 111/217 (51.15%), Query Frame = 0


Query: 9   EKMHKSLIICWQIWNYRNHILHNQIQPDFNTLQNQIANYMEELKRSSGPNQSIPLPATIL 68
           E +   LI  W IWN+RN+++       F+T+  Q+  ++ E    S    S+ +    L
Sbjct: 8   EDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQS--ETSLSMLHKTL 67

Query: 69  SRTPGWSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINRPWIISWLE 128
           +    W  PP  IW LN DA+WS+   RGGIGWI R  D + + AG+R +     +  LE
Sbjct: 68  NNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLE 127

Query: 129 SLAISEGLRHLPEDS--PPVQVESDALHVTQLLNGREEDESKVQLFIEEAKSLISKSNIE 188
           + AI EGLR+L       P+ +E+D+  V  LLN + ED +K    +EE  +L     I 
Sbjct: 128 ASAILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEIL 187

Query: 189 GIYQVKRIHNQMAHSLARKTCLSGSSDSWATLFPSWL 224
              +V R  N  AHSLA++  +   S  W   FP+WL
Sbjct: 188 AFAKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

[Close]

BLAST of Spg029223 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 71/206 (34.47%), Postives = 104/206 (50.49%), Query Frame = 0


Query: 9   EKMHKSLIICWQIWNYRNHILHNQIQPDFNTLQNQIANYM-------EELKRSSGPNQSI 68
           E+  +S+II WQIW  RN  +   + P+   +Q  I  Y+         LK  S  N+ +
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKS-TNKDL 66

Query: 69  PLPATILSRTPG-WSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINR 128
            L   I   T   W  P S  WKLN +AAW  D   GGIGWI R      I A  R I  
Sbjct: 67  HLIRRIEDNTGAQWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRA 126

Query: 129 PWIISWLESLAISEGLRHL-PEDSPPVQVESDALHVTQLLNGREEDESKVQLFIEEAKSL 188
              I++LE +AI EGLR +  E   P+ +ESD+L    LL+ + +D++++   +EE   +
Sbjct: 127 ERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQM 186

Query: 189 ISKSNIEGIYQVKRIHNQMAHSLARK 206
           +    I  +  + R  N++AH LAR+
Sbjct: 187 MKDMEIVSMRHISREANKVAHGLARR 211

[Close]

BLAST of Spg029223 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 68/213 (31.92%), Postives = 102/213 (47.89%), Query Frame = 0


Query: 9   EKMHKSLIICWQIWNYRNHILHNQIQPDFNTLQNQIANYM------EELKRSSGPNQSIP 68
           E+  +S+II WQIW  RN  +   +  +   +Q  I  Y+      +   +    N+ + 
Sbjct: 7   EERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKSANKDLH 66

Query: 69  LPATILSRTPG-WSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINRP 128
           L   I   T   W  P S  WKLN DAAW  D   GGIGWI R      I A  R I   
Sbjct: 67  LIRRIGDNTGARWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTE 126

Query: 129 WIISWLESLAISEGLRHL---------PEDSPPVQVESDALHVTQLLNGREEDESKVQLF 188
             I++LE +AI EGLR +          E   P+ +ESD+L    LL+ + +D++++   
Sbjct: 127 RNITYLEVMAICEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWL 186

Query: 189 IEEAKSLISKSNIEGIYQVKRIHNQMAHSLARK 206
           +EE   ++    I  +  + R  N++AH LAR+
Sbjct: 187 LEEIWQMMEDMKIVSMRHISREANKVAHDLARR 219

[Close]

BLAST of Spg029223 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-17
Identity = 59/200 (29.50%), Postives = 97/200 (48.50%), Query Frame = 0


Query: 10  KMHKSLIICWQIWNYRNHILHNQI-QPDFNTLQNQIANYMEELKRSSGPNQSIPLPATIL 69
           K    L++ W IW YRN I+H+ I QP    ++    + + E   + G N  + +    L
Sbjct: 15  KRQSGLVLLWSIWTYRNQIVHSTIEQPCSQKIRAFTESKIYEFTTNLGGN--LNMEDKNL 74

Query: 70  SRTPGWSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINRPWIISWLE 129
            RT GW+ P   +WKLN DA W + L  GG+GWI R ++        R I    + +  +
Sbjct: 75  PRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSE-------GRFIMAECLKALSQ 134

Query: 130 SLAISEGLRHLPEDSPPVQVESDALHVTQLLNGREEDESKVQLFIEEAKSLISKSNIEGI 189
           SL +  G++        +++ESD L V  ++N      ++V L +E+    +    IEG 
Sbjct: 135 SLTLEAGIK--------IEMESDCLEVVNIINKSSMVLTEVSLIVEDIWKEMESLPIEGF 194

Query: 190 YQVKRIHNQMAHSLARKTCL 209
             +    N +AH +AR+ C+
Sbjct: 195 KHLPMKANGVAHGIARRACV 197

[Close]

BLAST of Spg029223 vs. ExPASy TrEMBL
Match: A0A7J6ERF5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020551 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.9e-17
Identity = 64/229 (27.95%), Postives = 105/229 (45.85%), Query Frame = 0


Query: 8   IEKMHKSLIICWQIWNYRNHILHNQIQPDFNTLQNQIANYMEELKRSSGPNQSIPLPATI 67
           + +   ++ I W IW  RN          +N L       + +   S+ P  S P+   +
Sbjct: 163 MNEFEDAIKIMWAIWENRNR--------KWNNLHVMNGAQLLDWVFSAYPGSSTPVKNDM 222

Query: 68  -----LSRTPGWSRPPSGIWKLNCDAAWSEDLQRGGIGWIPRQADENPISAGHRHINRPW 127
                LS+T  W RPP+G   +NCDAA +      G G+I R  D   + AG  + NR  
Sbjct: 223 TTNMELSKTTHWIRPPAGYIAVNCDAAMNSGAAGIGTGFIWRNWDGKLLIAGMNYSNRCC 282

Query: 128 IISWLESLAISEGLRHLPEDS-PPVQVESDALHVTQLLNGREEDESKVQLFIEEAKSLIS 187
            +   E+ AI E L ++P  +  P++++SD  H+   +  ++   + V   I + +  + 
Sbjct: 283 SVDMAEAWAILEALNNMPNTTDSPMEIQSDCKHLVDKIMNQDNHLTAVNTIIHQIRMQME 342

Query: 188 KSNIEGIYQVKRIHNQMAHSLARKTCLSGSSDSWATLFPSWLLQLNYSD 231
           K N   I  V R +N+ AH LARK   + ++  +   FP WL Q   +D
Sbjct: 343 KLNCNSIVHVNRNNNECAHMLARKCLATKTTQIFTHPFPRWLAQFCTAD 383

The following BLAST results are available for this feature:

BLAST of Spg029223 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	1.1e-26	35.02	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143535.1	2.4e-21	34.47	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022156777.1	6.0e-20	31.92	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022148549.1	4.8e-17	29.50	uncharacterized protein LOC111017181 [Momordica charantia]	[more]
KAF4360260.1	8.1e-17	27.95	hypothetical protein F8388_020551 [Cannabis sativa] >KAF4393916.1 hypothetical p...	[more]

BLAST of Spg029223 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg029223 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	5.5e-27	35.02	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CP26	1.2e-21	34.47	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DSV1	2.9e-20	31.92	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1D4B6	2.3e-17	29.50	uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A7J6ERF5	3.9e-17	27.95	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020551 PE=4 SV=1	[more]

BLAST of Spg029223 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 85..205 e-value: 4.4E-14 score: 52.4
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 82..211 e-value: 9.2E-10 score: 40.6
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 71..223
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 71..223
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 84..204 e-value: 3.28949E-16 score: 70.806
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 81..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg029223.1	Spg029223.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity