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Spg029155 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGAAGAACCAGGTCTGCAACCTGCGAACCATTACTGGAGCTTCCGATTCCATCATACTCTAAAACCCATTAGCTTTTCTCGGTTTTCTTCAACAACGGAAAAGAAGGAACAGTGGTAGGTTCCCTTTCAGTTCTGCCCTCACTCCTTCCTCAGCTTTTCTATGCAATTTGGGACAAATCCATTCTCTGGTTTCCACGTCGCCGCTTTATTGGATGGCGATATCTAGTTTGAGCGCGCAAAAATTGGTTTATTGTTATCACATTTTGCTGTGTTTCTATCTTTCGCCGTGCCCTTTTGTCTGTTGCAGAAAATTTTCGTTCTTTAACTTTTGGAGTGCAGGTGGGACTTGGAAGAAGTTCAAATTGGTTGCTCGATTTCGTTCGGGAGTACGGTTCCGGGAGTTGATCCTTGTCCGAAGGCTAATGGCTGTGAGTTCCCGAAGGACCTCTTCTTATTCTCTTCTTCGTTTTCGTTTGGTATTTTGTGTTTACCATTTTTTTGACTGTTTTTTAAACAATGGAGCCTACTGAATTTATTGGTTATCTTATCTATAGTCGTTTGGGAAGTTTTTTCGGCCACAATTTTGGACTGCCCTTGCTTCTTATATGCATATCTCCCTGATGGTTGAAGTTTTGAATACAGGGAAATCTTGGAATTTCTGGAAATTTTGGACTGCCCTTGCTTTTATTGGGTTCTGGTTGTTTATGGTGTTTTTAATGCCACCAGATAATTGGTTTCTGTCAATTTCTTGGATCTGAATAATCTTTTGCAACGTGGTTATTGGATTGATTTTCGTATCAATTCTTTCAACACTAATCGTCTCTAAGAGGAAGATGGGAACCAAGTATGTCCAGAAGAGTGCTAAGTACAAGACTTCAGTTAAGGATCCTGGCACGCCTGGCGTTTTGGAAATGGTACTTGTCTAA ATGAAGAAGAACCAGCTTTTCTATGCAATTTGGGACAAATCCATTCTCTGGTGGGACTTGGAAGAAGTTCAAATTGGTTGCTCGATTTCGTTCGGGAGTACGGTTCCGGGAGTTGATCCTTGTCCGAAGGCTAATGGCTGGAAATCTTGGAATTTCTGGAAATTTTGGACTGCCCTTGCTTTTATTGGGTTCTGGTTGTTTATGGTGTTTTTAATGCCACCAGATAATTGGAAGATGGGAACCAAGTATGTCCAGAAGAGTGCTAAGTACAAGACTTCAGTTAAGGATCCTGGCACGCCTGGCGTTTTGGAAATGGTACTTGTCTAA ATGAAGAAGAACCAGCTTTTCTATGCAATTTGGGACAAATCCATTCTCTGGTGGGACTTGGAAGAAGTTCAAATTGGTTGCTCGATTTCGTTCGGGAGTACGGTTCCGGGAGTTGATCCTTGTCCGAAGGCTAATGGCTGGAAATCTTGGAATTTCTGGAAATTTTGGACTGCCCTTGCTTTTATTGGGTTCTGGTTGTTTATGGTGTTTTTAATGCCACCAGATAATTGGAAGATGGGAACCAAGTATGTCCAGAAGAGTGCTAAGTACAAGACTTCAGTTAAGGATCCTGGCACGCCTGGCGTTTTGGAAATGGTACTTGTCTAA MKKNQLFYAIWDKSILWWDLEEVQIGCSISFGSTVPGVDPCPKANGWKSWNFWKFWTALAFIGFWLFMVFLMPPDNWKMGTKYVQKSAKYKTSVKDPGTPGVLEMVLV Homology
BLAST of Spg029155 vs. NCBI nr
Match: KAG6597731.1 (General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10 Identity = 41/74 (55.41%), Postives = 47/74 (63.51%), Query Frame = 0
BLAST of Spg029155 vs. NCBI nr
Match: KAG7029183.1 (putative RNA polymerase II transcription factor B subunit 1-1 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Spg029155 vs. NCBI nr
Match: XP_022155950.1 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 [Momordica charantia]) HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Spg029155 vs. NCBI nr
Match: XP_023539702.1 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Spg029155 vs. NCBI nr
Match: XP_022155949.1 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Momordica charantia]) HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Spg029155 vs. ExPASy TrEMBL
Match: A0A6J1IB04 (probable RNA polymerase II transcription factor B subunit 1-1 OS=Cucurbita maxima OX=3661 GN=LOC111470852 PE=3 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Spg029155 vs. ExPASy TrEMBL
Match: A0A6J1DNY2 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022945 PE=3 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Spg029155 vs. ExPASy TrEMBL
Match: A0A6J1DRT9 (probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022945 PE=3 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Spg029155 vs. ExPASy TrEMBL
Match: A0A6J1EXP7 (probable RNA polymerase II transcription factor B subunit 1-1 OS=Cucurbita moschata OX=3662 GN=LOC111439158 PE=3 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05 Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Spg029155 vs. ExPASy TrEMBL
Match: A0A0A0KYD2 (PH_TFIIH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G338430 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05 Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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