Spg028825 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028825
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Locationscaffold7: 11533325 .. 11536239 (+)
RNA-Seq ExpressionSpg028825
SyntenySpg028825
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTCCACGACCAAGGAGGAGATGGATCGAAAGCGTCGCAAGGAGCTGTATACGGAGCTGCAGACCATACCGGGAGTTTCGTTGGAGGACGGCTTAGTCATCGCACGGGCTTTACTGGCTGATTCGAGCATGCTGACACACTTCATGGACTTCCCTCCAGAGTGGAAGTATGACTATTGCATGCAGGTGCTTGGTAGGGCACCTCGACAACCGAGTCAGCCCTGATCCTCCCCATTCTGCAGCCGAAGACTTGACGCTACCCATCTTATGTTTTTATGCAATCCCACTTTATTTTGTTCAAACTATTTAATCTTCTTTTAGACTGTTGTTATCAACTCTTCAATTTTCTTACTTTATGTCATGTTGGTTGATGTATGATCGGATGTACGCATTTTGGAACTTCATTATGAATGCTACTATGATATTTCTTATTCCTACACATTCAAATGTGTTCAAATATTTCATGTCTTGAGTAAAAAAAAATTTTGCACACATTATTATATTGTTTAAACCTTTTCAAATGGGTGAAAAAATATCTGAGTGTGGGAAAGAAAAAAAAAACAGTTTAGAAAAAGACAGCAATTACGATTCCAGTCCAATTACAACCCTGTAATCTAAACATAGGCATCATACCAAATACAGCGCACCAAACACAAGCATTTGGATTTCCAGTGATTCAGATTCCCTGTAATCCAGATTACATTCCCTCCCTATATATATATATATATATATATATATAGTTCTTAACAGGTCTCTAAACTTTAAAAAACCAAGAAACAAACTTGATGAACTTATAAATATTGTGTCTATAACTATATATATATTCAACTTTAGTTCTTAACGAGACTCTAAACTTTAAAAAACCAAGAAACAAACTTGATGAACTTATAAATATTGTGACTAATAGTTATATTGAACTTAGTTTGGATTTTAGGTATAATATGAGTCTAAACTTTTAACTTTGTGTCTAGTAAGTCTATAAATTAAAAAAAAAAAAAAAAAAAAACCGAATAGATCCTTTCAAAATGTAAGGACTAAATATACACAAACTCAAACATGAAGGAAAAAAACAATAAGTACTATACTTGTAGTTTAACTTAATTTTTTTCAAAGTTTTAAGAAAATCTTTAAAATTTGAAGTACCAAACTTGAGAAAATCTTAGGACAAAGTTCACCAATAATGTAGTTAAAAAAAAATGACAAAATTAGAGTAGTTTTGAAAAAATTAATTTTAATAATGTAAATAAAAAAAACAAATTATAAATTTGAGGTAAGAGAGAAAAGTATTGACAAATGTAGAGTTGCTGCCAACAATGAACTCGTGTACCTCGTACGCGATTTAGGGCGGTCTACGTGGCGGTGACGAGGTGGTAAAAATCGTGTACATCGTACACGAGTTCGCAAAGAAATCGTGTACGATGTACACGATTTCTATATTTGGAAATCGCGTACCACGTACACGATTTCCTTATTTGGAAACTCGCGTACCACGTACACGATTTCCATATTTGGAAATTCCTTTTTTAATATCCATATTTTTTTCCTTTTATATCTATAATAATATGTTATATATATAAATTTATGTTTAACTTTGTAACTTTTCTCGCCCATTAAGGAAACAACCACTTTCTTAGTCCTCTCCCTATTTAAGAGTGGTAGGGTAAATGAATCAATGATCAAAATTCCAATGATTTTGCTAGACAATTTTTTTTATACAATTAGTTTTTCTAAAATATATGTTTTTTTTTATATTTATATTTTATATATTTTTCTGTGTAAAATTTAAAAAAATAAAAAAAAAATTAAAGAGAAAAATTAACTAATTTACAACCGTATTCAACATTTACTAAACATTAAAATAAGGTATATATATATATTGCAAATTTTAAATAATATATAAAACAAATGACAAAAAAAAAAGCAAACAACCAGTTTTGATCCCTAGCACTCTAGAATCTTTACTAAAATTTTAACCACTGAACCAATACAATGCTTTGAAGTAAGAGTTCACAAAAGTTTTATTTATCCTTACTGAACTCGTGTACATGGTACACGAGTTCGACGTGGAACTCACGTACACCGTACGCGAGTTTTCTGTTTTTGGTGCGTGTTTCTCCACGGTGGCACCACTTGGAGACGTGTCATGTAAATCGTGTACCGTGTACACGATTTACACTTGCAATCGTGTACCAGGGTCACGATTTAGCTAAAACGTGACCAATGTACACGATTTAGCTAAAACGTGACCAATGTACACGATTTAGCTATCCCAGATTTGGAATTAGTTTCAAAACTACTCTAAATTTGTTTTTTATTTTTTAAATTACATTATTTTAAAAAAAATCCAAAAAAAAAAAAAAAAGGATCGAACTAATCATGAGCAAAACAGATTTGAATATACCAAAAGAACGAAGAGATAGTAAAAATGGTAAAAGAAAAATGATGGGAAAGGAAGAAGGATGGGCTCACCATGACCTAACAGAGACAATGGCTTGGTCTTAACGATCTGCTTGGGGAAAGCGATTTCTTCGATCACTTCCACTTCACTCCCCACTGTTTCACAGAATTCCAACACCAACAAAACACACACAGAGATCCACAACAAAATCAGCCAATCGACAACGAATCAAAAGAAAAGGAAAAAAGAAAACCCTAAGTCATGCGAGGCACAAACAAAATGCAATCAATTCGAACGCCATGGACAAGAAACAACAACAGATAAAACGCCCAAATCTCACTTCAGAACACGGTTTTTCATTGAGACATTAACACAAACAGTTGATAGGCAAGAAAAGAGGAGAAGAGAAATTGCCGTGCGTAAAAACAGAGGAAAGGAAAGGAAAGAAGCCGTACTGGTTGCGATCGTGAAGGAAGAGAGGAAGTTCTTCAGCGGAAATGGGTTGAGGGATTAG

mRNA sequence

ATGTGGTCCACGACCAAGGAGGAGATGGATCGAAAGCGTCGCAAGGAGCTGTATACGGAGCTGCAGACCATACCGGGAGTTTCGTTGGAGGACGGCTTAGTCATCGCACGGGCTTTACTGGCTGATTCGAGCATGCTGACACACTTCATGGACTTCCCTCCAGAGTGGAAGTATGACTATTGCATGCAGTTCGACGTGGAACTCACGTACACCGTACGCGAGTTTTCTGTTTTTGGTGCGTGTTTCTCCACGGTGGCACCACTTGGAGACGTGTCATTTGATAGGCAAGAAAAGAGGAGAAGAGAAATTGCCGTGCGTAAAAACAGAGGAAAGGAAAGGAAAGAAGCCGTACTGGTTGCGATCGTGAAGGAAGAGAGGAAGTTCTTCAGCGGAAATGGGTTGAGGGATTAG

Coding sequence (CDS)

ATGTGGTCCACGACCAAGGAGGAGATGGATCGAAAGCGTCGCAAGGAGCTGTATACGGAGCTGCAGACCATACCGGGAGTTTCGTTGGAGGACGGCTTAGTCATCGCACGGGCTTTACTGGCTGATTCGAGCATGCTGACACACTTCATGGACTTCCCTCCAGAGTGGAAGTATGACTATTGCATGCAGTTCGACGTGGAACTCACGTACACCGTACGCGAGTTTTCTGTTTTTGGTGCGTGTTTCTCCACGGTGGCACCACTTGGAGACGTGTCATTTGATAGGCAAGAAAAGAGGAGAAGAGAAATTGCCGTGCGTAAAAACAGAGGAAAGGAAAGGAAAGAAGCCGTACTGGTTGCGATCGTGAAGGAAGAGAGGAAGTTCTTCAGCGGAAATGGGTTGAGGGATTAG

Protein sequence

MWSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYCMQFDVELTYTVREFSVFGACFSTVAPLGDVSFDRQEKRRREIAVRKNRGKERKEAVLVAIVKEERKFFSGNGLRD
Homology
[Close]
BLAST of Spg028825 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-09
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 2   WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYC 61
           W   K E++    K LYTELQTIPG+ ++D L++A +LL D +ML  F+D+P EWKY  C
Sbjct: 480 WQREKMEIESSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKC 539

Query: 62  MQ 64
           M+
Sbjct: 540 MR 541

[Close]
BLAST of Spg028825 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-08
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 2   WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYC 61
           W   K E++    K LY +LQTIPG+ ++D L++A +LL D +ML  F+D+P EWKY  C
Sbjct: 194 WQREKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKC 253

Query: 62  MQ 64
           M+
Sbjct: 254 MR 255

[Close]
BLAST of Spg028825 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-04
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 2   WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFP 54
           W   K E++    K LY ELQTIPG+ ++D L++A +LL D +ML  F+D+P
Sbjct: 344 WQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYP 395

[Close]
BLAST of Spg028825 vs. ExPASy TrEMBL
Match: A0A5A7VG45 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00220 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-09
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 2   WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYC 61
           W   K E++    K LYTELQTIPG+ ++D L++A +LL D +ML  F+D+P EWKY  C
Sbjct: 480 WQREKMEIESSLHKRLYTELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKC 539

Query: 62  MQ 64
           M+
Sbjct: 540 MR 541

[Close]
BLAST of Spg028825 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-08
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 0 

Query: 2   WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFPPEWKYDYC 61
           W   K E++    K LY +LQTIPG+ ++D L++A +LL D +ML  F+D+P EWKY  C
Sbjct: 194 WQREKMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKC 253

Query: 62  MQ 64
           M+
Sbjct: 254 MR 255

[Close]
BLAST of Spg028825 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.1e-04
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 0 

Query: 2   WSTTKEEMDRKRRKELYTELQTIPGVSLEDGLVIARALLADSSMLTHFMDFP 54
           W   K E++    K LY ELQTIPG+ ++D L++A +LL D +ML  F+D+P
Sbjct: 344 WQREKMEIESSLHKRLYAELQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYP 395

The following BLAST results are available for this feature:
BLAST of Spg028825 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065306.14.4e-0950.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050106.13.7e-0846.77retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07921.14.3e-0446.15hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa][more]
BLAST of Spg028825 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg028825 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VG452.1e-0950.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U7F71.8e-0846.77Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C7T42.1e-0446.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg028825 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028825.1Spg028825.1mRNA