Spg028445 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028445
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold7: 15544205 .. 15546032 (-)
RNA-Seq ExpressionSpg028445
SyntenySpg028445
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGCTTAATACCCACCACCGCCAAAGTGATCTCAGCCCATTTTTCAAGCCATTTTTCTCATCATTTTCCACCCAAACTTTCAGAACACTGTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGGAATAAGAGGTGAGATTTGATTTTCTTGAAATTTAGTTCATTTTCTAACAAAATTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTTTGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGATGTTTTGAGCATTCTGAGGTGTAAAAGTCGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTAGAACTTTCATGAAGATTTAGTGAGCCAAAAATGACTTTAAGTAGGGTTACTTTCAGGAGTTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATAAAGAGTTTGATGTGTATTTCATTAATTTTGGTTAAGTATTGAGGAAGTTATAGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTAGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTACAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGACGTTTTATATGCTTTACCATGAATGATATATGATTTTTATGAACGGTTTCAAGCATAAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCTAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCTCGAGACTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGTCCTACACAACGTAGATAGGTCATGTTAGTTAAAATGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATATTTTAGGAAGCCATTTTCATTACACATTTATGTTAAACGCTTGAATTGAGCATATCTATACGTTTAAAGGTTTATCATGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTCCATAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

mRNA sequence

ATGGACAGCTTAATACCCACCACCGCCAAAGTGATCTCAGCCCATTTTTCAAGCCATTTTTCTCATCATTTTCCACCCAAACTTTCAGAACACTGTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGA

Coding sequence (CDS)

ATGGACAGCTTAATACCCACCACCGCCAAAGTGATCTCAGCCCATTTTTCAAGCCATTTTTCTCATCATTTTCCACCCAAACTTTCAGAACACTGTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTGA

Protein sequence

MDSLIPTTAKVISAHFSSHFSHHFPPKLSEHCKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQN
Homology
[Close]
BLAST of Spg028445 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 3.0e-06
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 20  FSHHFPPKLSEHCKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIW 66
           F HHFP KLSEH +ERVK EEEEEFRG  +++  KSSCKA+H RIW
Sbjct: 64  FLHHFPSKLSEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIW 108

[Close]
BLAST of Spg028445 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 0 

Query: 20  FSHHFPPKLSEHCKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIW 66
           F HHFP KLSEH +ERVK EEEEEFRG  +++  KSSCKA+H RIW
Sbjct: 64  FLHHFPSKLSEHFEERVK-EEEEEFRGLRLKKIGKSSCKANHCRIW 108

The following BLAST results are available for this feature:
BLAST of Spg028445 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK08801.13.0e-0669.57hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa][more]
BLAST of Spg028445 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg028445 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CAC61.4e-0669.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg028445 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028445.1Spg028445.1mRNA