Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAGGGCTAGTTATCTAACACGATTACGTTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATTGACTTGACAACGACGATAGATTGTAAAGTCAAATCCCTAAAGCAGCAGTATGGTGCAATTGCCGAGATGTTGGGCCTGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATGCATGGAGGCTGAGAAAGATGTGTTCGATGCGTGGATCAAGGTAAGGTTATTGTTCACTCATAAACAAAGTTGTCTACAATGTATGCTAATATCCTTTCTTACACATGCAGTCACACTCAATTGCGAAAGGACTCCTCAACAAGTCATTCCCTTGACTTGACTTTCGTGTTTGGTAAAGATCGAGCTACCGAAGGGGCTACACAAGTACCTGTTCACATGGCCTCGAGGGCTCATGTGGAAGAAGAGGGCGATGTCAATATGGGAGCATCACCAAGGTATTATGTCCCAGTGCCACTCGTGTTCAATGTCGCTATCGAGGCCGAGTCAACGCGTGCCCATAACCCCTACCAAGAGACCGAGTGCAATCGGGACATCACAGGGGATGAAGAGGAAGAGGGTGTCATACTAGGTAGAGGCCCTCGACATCATGAGAGCAGCCATGGAATTCTAGACGACCCAGATGATGAGGATTGTAGACTGCTACTAGGGCTACCAGAGCTAACTGATGATGAGATGGTAGACCTCATGAATATTTTGTTCCTAGACTCCAAGACAAGCACGTTCTTATCCATACCACTTGCACTGAAATTTCAATTCTATAGATGTCTGTTGAACGAGACTAGATGA
mRNA sequence
ATGTTCAGGGCTAGTTATCTAACACGATTACGTTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATTGACTTGACAACGACGATAGATTGTAAAGTCAAATCCCTAAAGCAGCAGTATGGTGCAATTGCCGAGATGTTGGGCCTGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATGCATGGAGGCTGAGAAAGATGTGTTCGATGCGTGGATCAAGGTAAGTCACACTCAATTGCGAAAGGACTCCTCAACAAGTCATTCCCTTGACTTGACTTTCGTGTTTGGTAAAGATCGAGCTACCGAAGGGGCTACACAAGTACCTGTTCACATGGCCTCGAGGGCTCATGTGGAAGAAGAGGGCGATGTCAATATGGGAGCATCACCAAGGTATTATGTCCCAGTGCCACTCGTGTTCAATGTCGCTATCGAGGCCGAGTCAACGCGTGCCCATAACCCCTACCAAGAGACCGAGTGCAATCGGGACATCACAGGGGATGAAGAGGAAGAGGGTGTCATACTAGGTAGAGGCCCTCGACATCATGAGAGCAGCCATGGAATTCTAGACGACCCAGATGATGAGGATTGTAGACTGCTACTAGGGCTACCAGAGCTAACTGATGATGAGATGGTAGACCTCATGAATATTTTGTTCCTAGACTCCAAGACAAGCACGTTCTTATCCATACCACTTGCACTGAAATTTCAATTCTATAGATGTCTGTTGAACGAGACTAGATGA
Coding sequence (CDS)
ATGTTCAGGGCTAGTTATCTAACACGATTACGTTGGATGTTGAGAGAGAAAATTTCAGGGTGTACTATTGACTTGACAACGACGATAGATTGTAAAGTCAAATCCCTAAAGCAGCAGTATGGTGCAATTGCCGAGATGTTGGGCCTGGGCTGTAGTGGCTTCGGGTGGAATGAAGAGTACAAATGCATGGAGGCTGAGAAAGATGTGTTCGATGCGTGGATCAAGGTAAGTCACACTCAATTGCGAAAGGACTCCTCAACAAGTCATTCCCTTGACTTGACTTTCGTGTTTGGTAAAGATCGAGCTACCGAAGGGGCTACACAAGTACCTGTTCACATGGCCTCGAGGGCTCATGTGGAAGAAGAGGGCGATGTCAATATGGGAGCATCACCAAGGTATTATGTCCCAGTGCCACTCGTGTTCAATGTCGCTATCGAGGCCGAGTCAACGCGTGCCCATAACCCCTACCAAGAGACCGAGTGCAATCGGGACATCACAGGGGATGAAGAGGAAGAGGGTGTCATACTAGGTAGAGGCCCTCGACATCATGAGAGCAGCCATGGAATTCTAGACGACCCAGATGATGAGGATTGTAGACTGCTACTAGGGCTACCAGAGCTAACTGATGATGAGATGGTAGACCTCATGAATATTTTGTTCCTAGACTCCAAGACAAGCACGTTCTTATCCATACCACTTGCACTGAAATTTCAATTCTATAGATGTCTGTTGAACGAGACTAGATGA
Protein sequence
MFRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYKCMEAEKDVFDAWIKVSHTQLRKDSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHVEEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEGVILGRGPRHHESSHGILDDPDDEDCRLLLGLPELTDDEMVDLMNILFLDSKTSTFLSIPLALKFQFYRCLLNETR
Homology
BLAST of Spg027647 vs. NCBI nr
Match:
XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 120.2 bits (300), Expect = 2.6e-23
Identity = 91/264 (34.47%), Postives = 131/264 (49.62%), Query Frame = 0
Query: 2 FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYK 61
F+ YL +L+ M+ EK+ G I ++TIDC VKSLK+ Y AIAEM G CSGFGWNEE++
Sbjct: 40 FQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQ 99
Query: 62 CMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHV 121
C+ AE+D+FD+WIK SH + S + DL++VFGKDRAT ++ ++ S
Sbjct: 100 CIIAERDLFDSWIK-SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSN 159
Query: 122 EEEGDVNMGASPRYYVPVPLVFNVAI---EAESTRAHNPYQETEC---NRDITGDEEEEG 181
+ +G S +P V + E RA + C ++ G E E
Sbjct: 160 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 219
Query: 182 VILGRGPRH--HESSHGILDDPDDEDC----------RLLLGLPELTDDEMVDLMNILFL 241
V + R +E I D P ++ + L +P+L + LM ILF
Sbjct: 220 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 279
Query: 242 DSKT-STFLSIPLALKFQFYRCLL 245
+ FLSIP LK ++ LL
Sbjct: 280 SLEAIEGFLSIPTELKLEYCNILL 302
BLAST of Spg027647 vs. NCBI nr
Match:
KAA0050293.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 114.8 bits (286), Expect = 1.1e-21
Identity = 65/176 (36.93%), Postives = 101/176 (57.39%), Query Frame = 0
Query: 2 FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYK 61
FR YL +L M+ +K+ GC + TT IDC++K+LK+ + AIAEM GL CSGFGWN+E K
Sbjct: 40 FRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGLACSGFGWNDEEK 99
Query: 62 CMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHV 121
C+ AEK++FD W++ SH + + + + +LT+VFG+DRAT + + S
Sbjct: 100 CIVAEKELFDNWVR-SHPEAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPG 159
Query: 122 EEEGDVNMGASPRYYVPVPLVFN--VAIEAESTRAHNPYQETECNRDITGDEEEEG 174
+ +MG + PLV++ V I + RA P + +E +G + + G
Sbjct: 160 DGYDRFDMGDGNEDF---PLVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRG 211
BLAST of Spg027647 vs. NCBI nr
Match:
XP_038880837.1 (uncharacterized protein LOC120072528 [Benincasa hispida])
HSP 1 Score: 114.0 bits (284), Expect = 1.9e-21
Identity = 58/131 (44.27%), Postives = 87/131 (66.41%), Query Frame = 0
Query: 1 MFRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEY 60
MFR YL L +L EK+ GC ++ TI+CKV+SLK+QY A++EML SGFGWNEE+
Sbjct: 1 MFRPGYLQHLERILHEKVPGCALN-QNTIECKVRSLKKQYNAVSEMLSQ--SGFGWNEEF 60
Query: 61 KCMEAEKDVFDAWIKVSHTQLRK--DSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAH 120
KC++ E+++ D W++ SH ++ + S SH DL+ VFGKDR +++ P MA+ A
Sbjct: 61 KCVQVEREILDLWVR-SHPNAKEMWNKSFSHYDDLSTVFGKDRVVGQSSEDPYVMATNAF 120
Query: 121 VEEEGDVNMGA 130
E E ++ +G+
Sbjct: 121 REFEDEIRLGS 127
BLAST of Spg027647 vs. NCBI nr
Match:
KAA0067583.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 113.6 bits (283), Expect = 2.4e-21
Identity = 65/174 (37.36%), Postives = 97/174 (55.75%), Query Frame = 0
Query: 2 FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYK 61
FR YL +L M+ EK+ GC + TT IDC++K+LK+ + AIAEM G CSGFGWN+E K
Sbjct: 40 FRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEK 99
Query: 62 CMEAEKDVFDAWIKVSHTQLRK--DSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHV 121
C+ AEK++FD W++ SH ++ + S+ +LT+VFG+DRAT + + S
Sbjct: 100 CIVAEKELFDNWVR-SHPAAKELLNKPFSYYDELTYVFGRDRATGRFAETFADVGSNEPG 159
Query: 122 EEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEG 174
+MG + PV V I + RA P + +E +G + + G
Sbjct: 160 GGYDRFDMGDGNEDFPPV-YSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRG 211
BLAST of Spg027647 vs. NCBI nr
Match:
KAA0038314.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 112.1 bits (279), Expect = 7.0e-21
Identity = 58/138 (42.03%), Postives = 85/138 (61.59%), Query Frame = 0
Query: 2 FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYK 61
FR YL +L M+ EK+ GC + T IDC++K+LK+ + AIAEM GL CSGFGWN+E K
Sbjct: 40 FRPGYLAQLVRMIAEKLLGCQVRATIVIDCRIKTLKRTFQAIAEMWGLACSGFGWNDEEK 99
Query: 62 CMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHV 121
C+ AEK++FD W++ SH ++ + + LT+VFG+DRAT+ +T+ + S
Sbjct: 100 CIIAEKELFDNWVR-SHPTVKGLLNKPFPYYDKLTYVFGRDRATDRSTETFADVGSNEPD 159
Query: 122 EEEGDVNMGASPRYYVPV 138
E +MG + PV
Sbjct: 160 GEYDRFDMGDGNEEFPPV 176
BLAST of Spg027647 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 91/264 (34.47%), Postives = 131/264 (49.62%), Query Frame = 0
Query: 2 FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYK 61
F+ YL +L+ M+ EK+ G I ++TIDC VKSLK+ Y AIAEM G CSGFGWNEE++
Sbjct: 40 FQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQ 99
Query: 62 CMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHV 121
C+ AE+D+FD+WIK SH + S + DL++VFGKDRAT ++ ++ S
Sbjct: 100 CIIAERDLFDSWIK-SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSN 159
Query: 122 EEEGDVNMGASPRYYVPVPLVFNVAI---EAESTRAHNPYQETEC---NRDITGDEEEEG 181
+ +G S +P V + E RA + C ++ G E E
Sbjct: 160 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 219
Query: 182 VILGRGPRH--HESSHGILDDPDDEDC----------RLLLGLPELTDDEMVDLMNILFL 241
V + R +E I D P ++ + L +P+L + LM ILF
Sbjct: 220 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 279
Query: 242 DSKT-STFLSIPLALKFQFYRCLL 245
+ FLSIP LK ++ LL
Sbjct: 280 SLEAIEGFLSIPTELKLEYCNILL 302
BLAST of Spg027647 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 91/264 (34.47%), Postives = 131/264 (49.62%), Query Frame = 0
Query: 2 FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYK 61
F+ YL +L+ M+ EK+ G I ++TIDC VKSLK+ Y AIAEM G CSGFGWNEE++
Sbjct: 40 FQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQ 99
Query: 62 CMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHV 121
C+ AE+D+FD+WIK SH + S + DL++VFGKDRAT ++ ++ S
Sbjct: 100 CIIAERDLFDSWIK-SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSN 159
Query: 122 EEEGDVNMGASPRYYVPVPLVFNVAI---EAESTRAHNPYQETEC---NRDITGDEEEEG 181
+ +G S +P V + E RA + C ++ G E E
Sbjct: 160 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 219
Query: 182 VILGRGPRH--HESSHGILDDPDDEDC----------RLLLGLPELTDDEMVDLMNILFL 241
V + R +E I D P ++ + L +P+L + LM ILF
Sbjct: 220 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 279
Query: 242 DSKT-STFLSIPLALKFQFYRCLL 245
+ FLSIP LK ++ LL
Sbjct: 280 SLEAIEGFLSIPTELKLEYCNILL 302
BLAST of Spg027647 vs. ExPASy TrEMBL
Match:
A0A5A7U308 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00120 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 5.3e-22
Identity = 65/176 (36.93%), Postives = 101/176 (57.39%), Query Frame = 0
Query: 2 FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYK 61
FR YL +L M+ +K+ GC + TT IDC++K+LK+ + AIAEM GL CSGFGWN+E K
Sbjct: 40 FRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGLACSGFGWNDEEK 99
Query: 62 CMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHV 121
C+ AEK++FD W++ SH + + + + +LT+VFG+DRAT + + S
Sbjct: 100 CIVAEKELFDNWVR-SHPEAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPG 159
Query: 122 EEEGDVNMGASPRYYVPVPLVFN--VAIEAESTRAHNPYQETECNRDITGDEEEEG 174
+ +MG + PLV++ V I + RA P + +E +G + + G
Sbjct: 160 DGYDRFDMGDGNEDF---PLVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRG 211
BLAST of Spg027647 vs. ExPASy TrEMBL
Match:
A0A5A7VHM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold485G00480 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 1.2e-21
Identity = 65/174 (37.36%), Postives = 97/174 (55.75%), Query Frame = 0
Query: 2 FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYK 61
FR YL +L M+ EK+ GC + TT IDC++K+LK+ + AIAEM G CSGFGWN+E K
Sbjct: 40 FRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEK 99
Query: 62 CMEAEKDVFDAWIKVSHTQLRK--DSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHV 121
C+ AEK++FD W++ SH ++ + S+ +LT+VFG+DRAT + + S
Sbjct: 100 CIVAEKELFDNWVR-SHPAAKELLNKPFSYYDELTYVFGRDRATGRFAETFADVGSNEPG 159
Query: 122 EEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEG 174
+MG + PV V I + RA P + +E +G + + G
Sbjct: 160 GGYDRFDMGDGNEDFPPV-YSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRG 211
BLAST of Spg027647 vs. ExPASy TrEMBL
Match:
A0A5A7VHE7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002310 PE=4 SV=1)
HSP 1 Score: 111.7 bits (278), Expect = 4.4e-21
Identity = 64/174 (36.78%), Postives = 96/174 (55.17%), Query Frame = 0
Query: 2 FRASYLTRLRWMLREKISGCTIDLTTTIDCKVKSLKQQYGAIAEMLGLGCSGFGWNEEYK 61
FR YL +L M+ EK+ GC + TT IDC++K+LKQ + AIAEM G CSGFGWN+E K
Sbjct: 40 FRPGYLAQLVRMMAEKLPGCQVRTTTVIDCRIKTLKQTFQAIAEMRGPACSGFGWNDEEK 99
Query: 62 CMEAEKDVFDAWIKVSHTQLR--KDSSTSHSLDLTFVFGKDRATEGATQVPVHMASRAHV 121
C+ AEK++FD W++ SH + + + +LT+VFG++RAT + + S
Sbjct: 100 CIVAEKELFDNWVR-SHPAAKGLMNKPFPYYDELTYVFGRNRATGRFAETFADVGSNEPD 159
Query: 122 EEEGDVNMGASPRYYVPVPLVFNVAIEAESTRAHNPYQETECNRDITGDEEEEG 174
+MG + PV V I ++ RA P + +E +G + + G
Sbjct: 160 GRYDRFDMGDGNEDFPPV-YSQGVDISQDNVRASRPSRASEGRTGSSGSKRKRG 211
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008441954.1 | 2.6e-23 | 34.47 | PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... | [more] |
KAA0050293.1 | 1.1e-21 | 36.93 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
XP_038880837.1 | 1.9e-21 | 44.27 | uncharacterized protein LOC120072528 [Benincasa hispida] | [more] |
KAA0067583.1 | 2.4e-21 | 37.36 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0038314.1 | 7.0e-21 | 42.03 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U0H7 | 1.2e-23 | 34.47 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B4L3 | 1.2e-23 | 34.47 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
A0A5A7U308 | 5.3e-22 | 36.93 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7VHM3 | 1.2e-21 | 37.36 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7VHE7 | 4.4e-21 | 36.78 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |