Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCATAACCCCAAATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAATCACCGTAGGATAGAAAACCAAACTCCGTACATCAGACACCAGATCAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAACACCAGGATGGATAGGACATGTTTTGCCATTCTATGTAGTTTGTTGAGAACGACTTCCGGTTTGGTAGGAATGGAAATTGTAGACGTCGAAGAGATGGTCGCGATGTTCCTACACATCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAATTTTCACGGTCGGGTGAAACTGTTTCTCGGCACTTCAACGTGACTTTGAGTGTCGTACTACGATTATACAACGTTCTACTTAAGAAACCAGAATCGATCACGGCTGCTTGCCAAGACGGGAGGTGGAAATGGTTCGAGGTATGGATACTATACGTTTGTACACATCGTGAAGATTTTACAACGTCCTTCTGACATCTGTAATGCGATGTGGAAACAGAATTGTTTAGGTGCATTGGACGGTACGTACGTAAAGGTTCATGTTAGTGCGACTGATCGACCAAGGTATAGGACGCGTAAGGGTGAGATTGCAATAAATGTATTGGGCGTTGTGTCGCCAAAAGGTGAATTCATGTTTGTTATGCCGGGATGGGAAGGTTCGGCTGCTGATTCTCGTGTACTCAGAGACGCAATATCACGCCCCAATGGACTAATAGTGTCGAAGGGTATGGAACCCAGTATCAATGTAAAATAGGATCGCTTACGTCATCCTTAGGTATTAACCATATTTTCTGAACAGGTTACTACTACCTCTGTGATGCTGGGTACCCCAACGCAGAGGGTTTCTTGGCACCTTACAGAGGAGAGCGGTACCACTTAACATAGTGGCGTGGGGGAGGAAATCCACCTACTACACCAAGAGAGTTCTTCAACATGAAGCATTCTTCTGCACGTAATGTTATCGAGAGAGCATTCGGTGCTCTGAAAGGACGGTGGGCGATACTTCGGGGGAAGTCATACTACCCTGCTCGGACCCAGTGTCGAATCATAACAGCGTGTTGTTTACTCCACAACCTTATCACCCGGGAGATGGGTCTGGATGTTGGGTCGGACGAAGGTGATGTTGGTCGGTCCAAGCCCATACCTCTTGATGGCGAGAACATTACCTTCATCCAAAGCTCCACTGAATGGACGCAAAAGGGAGATGACCTAGCGAACAGGATGTTCAACGCGTGGGGGCAACAACATCCCTGATCCAGTTTGGACATACGACTATCTGCTATGTTGTATTTTAAATATTTCTGACATTTCTTGGGCCGTACATTTTTCTACAATCTAAACGATCTATTTCATGTAACTGAGTTAGATTTATGGAAAACCATCGTTGATGTTGTTATTCTACATTACGTTTCTAACTTTGCATCTGCGATTACTTCATAAATAACTCTTCTACATTATGTCGTCGATAGTGTGACTTGATCAGGATACATACTTATGAAATCTAATGACACAATACTCTATCCATGTAGACTAATGGCAGGTGCAGATAAACACCCGAAACACATCTGGACAAGGCAGGAGGAGGCAAGGTTGGTCGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGCCCGGATACCTCGCCCGACTGAGGCGGATGATAAAAGAGAAATTGTCGACCTGCACCATAGATTCAACGTCCATAATAGACTGCAAGGTGCGGTCCTTGAAATGGCAATACAGTGCCATCTCGGAGATGGTGGGTCCGGGTTGCAGTGGATTTGATTAGAATGACGAGTTTAAATACATCCAGGCTGAGAAGGAGGTCTATGATGCATGGGTCAAGGTACAGTCATTAGTCATTCATTGATGGAACCCATGTACATTATCGTTTCTAAAACACTCTTCAATACATGCAGTCACACTCCAGCACAAAAGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTTGTGTTCGGCAAAGACAGGGCAAGTGGCGGCGCGTGCAATGTTCCAGTGGAACAGGCCAACAGCAACCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCGGACCAGGATTGTTATGTCCCCGCTCCTCCAGACATTAATCTGGCAGCAAACGTGGAGTTCGATGATGTCCCAATCACACCGACAAGTCAACCAAGCACTGTAGGGTCCTCCCAAAGTCGGAAGCGTAGCAGAGCATCATATGAAGCGGAAGCCCTTGATATTATGAGGCAGTCAGTGGCTATGCAGAAGACACAGCTCACTAAGATCGCTGACTGGCCGGACGCCCAAGACGCACGAGAGTTCAAGAGGCGGGACACGATCGGAGAGATGCTCCTATCGCAGCAGGAGCTATTGGACGATGAGAGAGTTGCTCTTATGCACATCCTATTCGCCGACCCGAAGATGACAAATATGATGTTGTTTGTGCCACCCAGCCTCAGGCTTCACTTTCTACGAAGACTACTCAACGAACGCCGGTGACTTCCTGCCAGACTTTCCTCCGACATACTTTTAATTTGTAATTACGATAATATGTACCTTTGACTGACATTTCATAATTTTTTGTTAACTGTAATATAGTCAACCC
mRNA sequence
ATGGATTCCATAACCCCAAATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAATCACCGTAGGATAGAAAACCAAACTCCGTACATCAGACACCAGATCAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAACACCAGGATGGATAGGACATGTTTTGCCATTCTATGTAGTTTGTTGAGAACGACTTCCGGTTTGGTAGGAATGGAAATTGTAGACGTCGAAGAGATGGTCGCGATGTTCCTACACATCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAATTTTCACGGTCGGGTGAAACTGTTTCTCGGCACTTCAACGTGACTTTGAGTGTCGTACTACGATTATACAACGTTCTACTTAAGAAACCAGAATCGATCACGGCTGCTTGCCAAGACGGGAGACTAATGGCAGGTGCAGATAAACACCCGAAACACATCTGGACAAGGCAGGAGGAGGCAAGGTTGGTCGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGCCCGGATACCTCGCCCGACTGAGGCGGATGATAAAAGAGAAATTGTCGACCTGCACCATAGATTCAACGTCCATAATAGACTGCAAGGCTGAGAAGGAGGTCTATGATGCATGGGTCAAGTCACACTCCAGCACAAAAGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTTGTGTTCGGCAAAGACAGGGCAAGTGGCGGCGCGTGCAATGTTCCAGTGGAACAGGCCAACAGCAACCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCGGACCAGGATTGTTATGTCCCCGCTCCTCCAGACATTAATCTGGCAGCAAACGTGGAGTTCGATGATGTCCCAATCACACCGACAAGTCAACCAAGCACTGTAGGGTCCTCCCAAAGTCGGAAGCGTAGCAGAGCATCATATGAAGCGGAAGCCCTTGATATTATGAGGCAGTCAGTGGCTATGCAGAAGACACAGCTCACTAAGATCGCTGACTGGCCGGACGCCCAAGACGCACGAGAGTTCAAGAGGCGGGACACGATCGGAGAGATGCTCCTATCGCAGCAGGAGCTATTGGACGATGAGAGAGTTGCTCTTATGCACATCCTATTCGCCGACCCGAAGATGACAAATATGATGTTGTTTGTGCCACCCAGCCTCAGGCTTCACTTTCTACGAAGACTACTCAACGAACGCCGGTGA
Coding sequence (CDS)
ATGGATTCCATAACCCCAAATGAACTTGTGTCCGTACTTTCAATAATGGCTGACTCTCAGCGCCAACTATTCAACCTGATTAACTCCTTCATGAACAATCACCGTAGGATAGAAAACCAAACTCCGTACATCAGACACCAGATCAGGCAGTTAGCCTGCTTCCGGTTGATTCATGAAAGTGACCTATGCTGTCGAGAAAACACCAGGATGGATAGGACATGTTTTGCCATTCTATGTAGTTTGTTGAGAACGACTTCCGGTTTGGTAGGAATGGAAATTGTAGACGTCGAAGAGATGGTCGCGATGTTCCTACACATCGTTGCTCACGATGTTAAGAATCGAGTCATTAGAAGACAATTTTCACGGTCGGGTGAAACTGTTTCTCGGCACTTCAACGTGACTTTGAGTGTCGTACTACGATTATACAACGTTCTACTTAAGAAACCAGAATCGATCACGGCTGCTTGCCAAGACGGGAGACTAATGGCAGGTGCAGATAAACACCCGAAACACATCTGGACAAGGCAGGAGGAGGCAAGGTTGGTCGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGCCCGGATACCTCGCCCGACTGAGGCGGATGATAAAAGAGAAATTGTCGACCTGCACCATAGATTCAACGTCCATAATAGACTGCAAGGCTGAGAAGGAGGTCTATGATGCATGGGTCAAGTCACACTCCAGCACAAAAGGACTGCTGAACAAGCCATTTCCTCACTACGAGGATCTTGCTTTTGTGTTCGGCAAAGACAGGGCAAGTGGCGGCGCGTGCAATGTTCCAGTGGAACAGGCCAACAGCAACCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCGGACCAGGATTGTTATGTCCCCGCTCCTCCAGACATTAATCTGGCAGCAAACGTGGAGTTCGATGATGTCCCAATCACACCGACAAGTCAACCAAGCACTGTAGGGTCCTCCCAAAGTCGGAAGCGTAGCAGAGCATCATATGAAGCGGAAGCCCTTGATATTATGAGGCAGTCAGTGGCTATGCAGAAGACACAGCTCACTAAGATCGCTGACTGGCCGGACGCCCAAGACGCACGAGAGTTCAAGAGGCGGGACACGATCGGAGAGATGCTCCTATCGCAGCAGGAGCTATTGGACGATGAGAGAGTTGCTCTTATGCACATCCTATTCGCCGACCCGAAGATGACAAATATGATGTTGTTTGTGCCACCCAGCCTCAGGCTTCACTTTCTACGAAGACTACTCAACGAACGCCGGTGA
Protein sequence
MDSITPNELVSVLSIMADSQRQLFNLINSFMNNHRRIENQTPYIRHQIRQLACFRLIHESDLCCRENTRMDRTCFAILCSLLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGETVSRHFNVTLSVVLRLYNVLLKKPESITAACQDGRLMAGADKHPKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRPGYLARLRRMIKEKLSTCTIDSTSIIDCKAEKEVYDAWVKSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQADQDCYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQKTQLTKIADWPDAQDAREFKRRDTIGEMLLSQQELLDDERVALMHILFADPKMTNMMLFVPPSLRLHFLRRLLNERR
Homology
BLAST of Spg027635 vs. NCBI nr
Match:
KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 244.2 bits (622), Expect = 2.1e-60
Identity = 197/650 (30.31%), Postives = 268/650 (41.23%), Query Frame = 0
Query: 7 NELVSVLSIMADSQRQLFNLINSFMNNHRRIENQTPYIRHQIRQLACFRLIHESDLCCRE 66
+EL S+++ SQRQL ++ N+ +RI + RH+IRQLA FR+IH SDL CR+
Sbjct: 4 HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63
Query: 67 NTRMDRTCFAILCSLLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGET 126
+TRMDR CFAILC LLRT +GL E+VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET
Sbjct: 64 STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123
Query: 127 VSRHFNVTLSVVLRLYNVLLKKPESITAACQDGR-------------------------- 186
+SRHFN+ L V+RL++ LLKKP+ + C D R
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRA 183
Query: 187 ------------------------------------------------------------ 246
Sbjct: 184 RYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLV 243
Query: 247 ------------------------------------------------------------ 306
Sbjct: 244 DAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRW 303
Query: 307 ------------------------------------------LMAGADKHPKHIWTRQEE 366
M + + PKH WT++EE
Sbjct: 304 AILRGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEE 363
Query: 367 ARLVESLVELVHEGGWRGDNGTFRPGYLARLRRMIKEKLSTCTIDSTSI----------- 426
A LVELV+ GGWR DNGTFRPGYL +L RM+ K+ C I +++I
Sbjct: 364 A----GLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIHASTIDSRIKLMKRMF 423
Query: 427 --------IDCK------------AEKEVYDAWVKSHSSTKGLLNKPFPHYEDLAFVFGK 437
+C AEKEV+D W SH + KGLLNK F HY++L++VFGK
Sbjct: 424 HALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGK 483
BLAST of Spg027635 vs. NCBI nr
Match:
TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 236.1 bits (601), Expect = 5.7e-58
Identity = 150/401 (37.41%), Postives = 205/401 (51.12%), Query Frame = 0
Query: 70 MDRTCFAILCSLLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGETVSR 129
MDR CF ILC++LRT GL + VDV+EMV +FLHIVAHDVKNRV RR +RSGETVSR
Sbjct: 1 MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60
Query: 130 HFNVTLSVVLRLYNVLLKKPESITAACQ-DG----------------------------- 189
HFN L+ VLRL+ +LLK+P+ +T +C DG
Sbjct: 61 HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120
Query: 190 ----------------RLMAGADKHPKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRP 249
+ + K KH WT E+ LVE L++LV EGGWR DNGTF+
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180
Query: 250 GYLARLRRMIKEKLSTCT----IDSTSIIDCKAEKEVYDAWVKSHSSTKGLLNKPFPHYE 309
GYL + + + C+ + I+ EK V+D WVK H + +GLLNKPFP++
Sbjct: 181 GYLKQYTAIAEMMGPACSGFGWNEGQKCIE--VEKPVFDDWVKGHPNAQGLLNKPFPYFY 240
Query: 310 DLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQADQDCYVPAPPDINLAANVEFDD 369
DL VFG+DRA+GG C PVE ++ D E D +D +P P + + +D
Sbjct: 241 DLEVVFGRDRATGGRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSG---ED 300
Query: 370 VPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQKTQLTKIADWPDAQDAREFK 421
+P TPTS GSS+ K+ R SY + +D R S+ ++ KIA W + E
Sbjct: 301 MPSTPTSMTHDAGSSRPSKK-RRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESS 360
BLAST of Spg027635 vs. NCBI nr
Match:
TYK26842.1 (uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa])
HSP 1 Score: 235.0 bits (598), Expect = 1.3e-57
Identity = 137/329 (41.64%), Postives = 188/329 (57.14%), Query Frame = 0
Query: 81 LLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGETVSRHFNVTLSVVLR 140
+LRT GL + VDVEEMV +FLHIVAHDVKNRV RR F+RSGETVSRHFNV L+VVLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 141 LYNVLLKKPESITAACQDGR-----LMAGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
L+ +LLK+P+S+T +C + + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 201 GDNGTFRPGYLARLRRMIKEKLSTCTIDSTSIID-------------------------- 260
DNGTF+PGYL ++++++KEK+ I T ++
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 261 ------CKAEKEVYDAWVKSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQAN 320
+AEK V + WVK H + + LLNKPFP++ DL VFG+DRA+GG C PVE +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 321 SNHGDDEGDQNVQADQDCYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRAS 371
D E D + +D +P P + + +D+P TPTS GSS+ K+ R S
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSSRPSKK-RRS 300
BLAST of Spg027635 vs. NCBI nr
Match:
KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])
HSP 1 Score: 232.6 bits (592), Expect = 6.3e-57
Identity = 136/329 (41.34%), Postives = 187/329 (56.84%), Query Frame = 0
Query: 81 LLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGETVSRHFNVTLSVVLR 140
+LRT GL + VDVEEMV +FLHIVAHDVKNRV RR F+RSGETVSRHFNV L+VVLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 141 LYNVLLKKPESITAACQDGR-----LMAGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
L+ +LLK+P+S+T +C + + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 201 GDNGTFRPGYLARLRRMIKEKLSTCTIDSTSIID-------------------------- 260
DNGTF+PGYL ++++++KEK+ I T ++
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 261 ------CKAEKEVYDAWVKSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQAN 320
+AEK V + WVK H + + LLNKPFP++ DL VFG+DRA+GG C PVE +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 321 SNHGDDEGDQNVQADQDCYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRAS 371
D E D + +D +P P + + +D+P TPTS GS + K+ R S
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSFRPSKK-RRS 300
BLAST of Spg027635 vs. NCBI nr
Match:
KAA0041291.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 219.5 bits (558), Expect = 5.5e-53
Identity = 147/369 (39.84%), Postives = 189/369 (51.22%), Query Frame = 0
Query: 70 MDRTCFAILCSLLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGETVSR 129
MDR CF ILC LLRT +GL +E+VDVEEMVAMFLHIVAHDVKNRVI+R+F RSGET+SR
Sbjct: 1 MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60
Query: 130 HFNVTLSVVLRLYNVLLKKPESITAACQDGR------------LMAG-----AD------ 189
HFN+ L VV+RL++ LLKKP+ + C D R L+AG AD
Sbjct: 61 HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFEVPISLQLLLAGWEGSAADSRILHD 120
Query: 190 ----------------------------------------------------------KH 249
KH
Sbjct: 121 AISRPNGLKVPKGYYYLVDAGYPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNMKH 180
Query: 250 PKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRPGYLARLRRMIKEKLSTCTIDSTSII 309
T++EEA LVE LVELV+ GGWR DNGTF PGYL +L R++ K+
Sbjct: 181 SSARNTKEEEAGLVECLVELVNGGGWRSDNGTFHPGYLNQLARVMAFKI----------- 240
Query: 310 DCKAEKEVYDAWVKSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGD 357
EKEV+D WVKSH + KGLLNK F HY++L++VFGKDRA+ G AN+ D
Sbjct: 241 ---LEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATEGRAE---SFANNGSND 300
BLAST of Spg027635 vs. ExPASy TrEMBL
Match:
A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)
HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60
Identity = 197/650 (30.31%), Postives = 268/650 (41.23%), Query Frame = 0
Query: 7 NELVSVLSIMADSQRQLFNLINSFMNNHRRIENQTPYIRHQIRQLACFRLIHESDLCCRE 66
+EL S+++ SQRQL ++ N+ +RI + RH+IRQLA FR+IH SDL CR+
Sbjct: 4 HELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLVCRQ 63
Query: 67 NTRMDRTCFAILCSLLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGET 126
+TRMDR CFAILC LLRT +GL E+VDVEEMVAMFLHI+AHDVKNRVI+R+F RSGET
Sbjct: 64 STRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRSGET 123
Query: 127 VSRHFNVTLSVVLRLYNVLLKKPESITAACQDGR-------------------------- 186
+SRHFN+ L V+RL++ LLKKP+ + C D R
Sbjct: 124 ISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFENCLGALDGTYIKVNVPASDRA 183
Query: 187 ------------------------------------------------------------ 246
Sbjct: 184 RYRTRKGEVATNVLGVYDTKGDFVYVLTGWEGSAADSRILRDALSRPNRLKVPKGYYYLV 243
Query: 247 ------------------------------------------------------------ 306
Sbjct: 244 DAGYPNAEGFLAPYRGQRYHLQEWRGPKNAPSTSKEFFNMKHSSARNVIERAFGVLKGRW 303
Query: 307 ------------------------------------------LMAGADKHPKHIWTRQEE 366
M + + PKH WT++EE
Sbjct: 304 AILRGKSYHPVEVQCHTILACCLLHNLINREMTNFDIEDNIVSMTSSSRLPKHTWTKEEE 363
Query: 367 ARLVESLVELVHEGGWRGDNGTFRPGYLARLRRMIKEKLSTCTIDSTSI----------- 426
A LVELV+ GGWR DNGTFRPGYL +L RM+ K+ C I +++I
Sbjct: 364 A----GLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGCNIHASTIDSRIKLMKRMF 423
Query: 427 --------IDCK------------AEKEVYDAWVKSHSSTKGLLNKPFPHYEDLAFVFGK 437
+C AEKEV+D W SH + KGLLNK F HY++L++VFGK
Sbjct: 424 HALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGK 483
BLAST of Spg027635 vs. ExPASy TrEMBL
Match:
A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)
HSP 1 Score: 236.1 bits (601), Expect = 2.7e-58
Identity = 150/401 (37.41%), Postives = 205/401 (51.12%), Query Frame = 0
Query: 70 MDRTCFAILCSLLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGETVSR 129
MDR CF ILC++LRT GL + VDV+EMV +FLHIVAHDVKNRV RR +RSGETVSR
Sbjct: 1 MDRRCFTILCTMLRTRGGLEATQYVDVKEMVVIFLHIVAHDVKNRVARRHCARSGETVSR 60
Query: 130 HFNVTLSVVLRLYNVLLKKPESITAACQ-DG----------------------------- 189
HFN L+ VLRL+ +LLK+P+ +T +C DG
Sbjct: 61 HFNAVLNAVLRLHEILLKQPDPVTHSCALDGTHIKVNVSMSDCPRYRFRNGDITTNVTTT 120
Query: 190 ----------------RLMAGADKHPKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRP 249
+ + K KH WT E+ LVE L++LV EGGWR DNGTF+
Sbjct: 121 YVMLVIQMLKDSSLHTEMASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKL 180
Query: 250 GYLARLRRMIKEKLSTCT----IDSTSIIDCKAEKEVYDAWVKSHSSTKGLLNKPFPHYE 309
GYL + + + C+ + I+ EK V+D WVK H + +GLLNKPFP++
Sbjct: 181 GYLKQYTAIAEMMGPACSGFGWNEGQKCIE--VEKPVFDDWVKGHPNAQGLLNKPFPYFY 240
Query: 310 DLAFVFGKDRASGGACNVPVEQANSNHGDDEGDQNVQADQDCYVPAPPDINLAANVEFDD 369
DL VFG+DRA+GG C PVE ++ D E D +D +P P + + +D
Sbjct: 241 DLEVVFGRDRATGGRCKTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSG---ED 300
Query: 370 VPITPTSQPSTVGSSQSRKRSRASYEAEALDIMRQSVAMQKTQLTKIADWPDAQDAREFK 421
+P TPTS GSS+ K+ R SY + +D R S+ ++ KIA W + E
Sbjct: 301 MPSTPTSMTHDAGSSRPSKK-RRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESS 360
BLAST of Spg027635 vs. ExPASy TrEMBL
Match:
A0A5D3DTL0 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00340 PE=4 SV=1)
HSP 1 Score: 235.0 bits (598), Expect = 6.1e-58
Identity = 137/329 (41.64%), Postives = 188/329 (57.14%), Query Frame = 0
Query: 81 LLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGETVSRHFNVTLSVVLR 140
+LRT GL + VDVEEMV +FLHIVAHDVKNRV RR F+RSGETVSRHFNV L+VVLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 141 LYNVLLKKPESITAACQDGR-----LMAGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
L+ +LLK+P+S+T +C + + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 201 GDNGTFRPGYLARLRRMIKEKLSTCTIDSTSIID-------------------------- 260
DNGTF+PGYL ++++++KEK+ I T ++
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 261 ------CKAEKEVYDAWVKSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQAN 320
+AEK V + WVK H + + LLNKPFP++ DL VFG+DRA+GG C PVE +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 321 SNHGDDEGDQNVQADQDCYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRAS 371
D E D + +D +P P + + +D+P TPTS GSS+ K+ R S
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSSRPSKK-RRS 300
BLAST of Spg027635 vs. ExPASy TrEMBL
Match:
A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)
HSP 1 Score: 232.6 bits (592), Expect = 3.0e-57
Identity = 136/329 (41.34%), Postives = 187/329 (56.84%), Query Frame = 0
Query: 81 LLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGETVSRHFNVTLSVVLR 140
+LRT GL + VDVEEMV +FLHIVAHDVKNRV RR F+RSGETVSRHFNV L+VVLR
Sbjct: 1 MLRTRGGLEATQYVDVEEMVTIFLHIVAHDVKNRVARRHFARSGETVSRHFNVVLNVVLR 60
Query: 141 LYNVLLKKPESITAACQDGR-----LMAGADKHPKHIWTRQEEARLVESLVELVHEGGWR 200
L+ +LLK+P+S+T +C + + + K KH WT E+ LVE L++LV +G WR
Sbjct: 61 LHEILLKQPDSVTHSCSHEKWRWFQMASINSKVTKHWWTTIEDEALVECLLQLVEKGCWR 120
Query: 201 GDNGTFRPGYLARLRRMIKEKLSTCTIDSTSIID-------------------------- 260
DNGTF+PGYL ++++++KEK+ I T ++
Sbjct: 121 VDNGTFKPGYLVQVQKLMKEKILESNIQVTPNLESGVKILKKQYTTIAEMMGPVCSGFSW 180
Query: 261 ------CKAEKEVYDAWVKSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQAN 320
+AEK V + WVK H + + LLNKPFP++ DL VFG+DRA+GG C PVE +
Sbjct: 181 NKERKCIEAEKSVSNDWVKGHLNARYLLNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGS 240
Query: 321 SNHGDDEGDQNVQADQDCYVPAPPDINLAANVEFDDVPITPTSQPSTVGSSQSRKRSRAS 371
D E D + +D +P P + + +D+P TPTS GS + K+ R S
Sbjct: 241 QTARDTEEDDMIINLEDFDIPNPHGLEPPSG---EDMPSTPTSMAHDAGSFRPSKK-RRS 300
BLAST of Spg027635 vs. ExPASy TrEMBL
Match:
A0A5A7TI01 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002840 PE=4 SV=1)
HSP 1 Score: 219.5 bits (558), Expect = 2.7e-53
Identity = 147/369 (39.84%), Postives = 189/369 (51.22%), Query Frame = 0
Query: 70 MDRTCFAILCSLLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKNRVIRRQFSRSGETVSR 129
MDR CF ILC LLRT +GL +E+VDVEEMVAMFLHIVAHDVKNRVI+R+F RSGET+SR
Sbjct: 1 MDRRCFTILCHLLRTVAGLTSIEVVDVEEMVAMFLHIVAHDVKNRVIQREFMRSGETISR 60
Query: 130 HFNVTLSVVLRLYNVLLKKPESITAACQDGR------------LMAG-----AD------ 189
HFN+ L VV+RL++ LLKKP+ + C D R L+AG AD
Sbjct: 61 HFNMVLLVVIRLHDKLLKKPQPVNNDCTDQRWRWFEVPISLQLLLAGWEGSAADSRILHD 120
Query: 190 ----------------------------------------------------------KH 249
KH
Sbjct: 121 AISRPNGLKVPKGYYYLVDAGYPNVDGFLAAYRGQRYHLQEWRGVENAPSTSKEFFNMKH 180
Query: 250 PKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRPGYLARLRRMIKEKLSTCTIDSTSII 309
T++EEA LVE LVELV+ GGWR DNGTF PGYL +L R++ K+
Sbjct: 181 SSARNTKEEEAGLVECLVELVNGGGWRSDNGTFHPGYLNQLARVMAFKI----------- 240
Query: 310 DCKAEKEVYDAWVKSHSSTKGLLNKPFPHYEDLAFVFGKDRASGGACNVPVEQANSNHGD 357
EKEV+D WVKSH + KGLLNK F HY++L++VFGKDRA+ G AN+ D
Sbjct: 241 ---LEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATEGRAE---SFANNGSND 300
BLAST of Spg027635 vs. TAIR 10
Match:
AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )
HSP 1 Score: 65.5 bits (158), Expect = 1.2e-10
Identity = 32/88 (36.36%), Postives = 54/88 (61.36%), Query Frame = 0
Query: 54 FRLIHESDLCCRENTRMDRTCFAILCSLLRTTSGLVGMEIVDVEEMVAMFLHIVAHDVKN 113
+++++ + C EN RMD+ F LC LL+T L + +E +A+FL I+ H+++
Sbjct: 32 YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91
Query: 114 RVIRRQFSRSGETVSRHFNVTLSVVLRL 142
R ++ F SGET+SRHFN L+ V+ +
Sbjct: 92 RAVQELFCYSGETISRHFNNVLNAVIAI 119
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0034843.1 | 2.1e-60 | 30.31 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK07921.1 | 5.7e-58 | 37.41 | hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa] | [more] |
| TYK26842.1 | 1.3e-57 | 41.64 | uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa] | [more] |
| KAA0033487.1 | 6.3e-57 | 41.34 | uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa] | [more] |
| KAA0041291.1 | 5.5e-53 | 39.84 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SWD8 | 1.0e-60 | 30.31 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3C7T4 | 2.7e-58 | 37.41 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3DTL0 | 6.1e-58 | 41.64 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A5A7SW62 | 3.0e-57 | 41.34 | Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A5A7TI01 | 2.7e-53 | 39.84 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G41980.1 | 1.2e-10 | 36.36 | CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... | [more] |
