Spg027624 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg027624
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationscaffold6: 37357406 .. 37364809 (-)
RNA-Seq ExpressionSpg027624
SyntenySpg027624
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTCCTTAACTCTAGGCATAAGGTTCTCCCTCCCTCCTATTTTAGGTCTTTTAAGGTTGTAACCATCCCTATTGTATTAGTATAAATATGGAGGTGTATGAAGGGTTAAACACAACAATTGAATGAGAATTACTTTGCTCTCTCTTTTCTCTCTCAATTTCTCTTTTAGTGTTAGTGTTCTTGTTATTGTTCTTCACGTTTTATAACAAAAAAATACTTTATTTATGTTCGATCAATTGTTACATTTACTATCTACGAGTTTTAGGGCATAAAACCCAACAGAATAAACATTAATCCGTGTTGTATTTTTTGCAGAAAAAAAGGAAATCGTCAGCCCAACTCTCTCTGGAATTGCAAGCAAGTAAGGAAAATTTAGAATGAATTCTTCCCAAACCTAACTAGTGGCTCTTTACCCTGCAAAGAGGAGGAGAGCTTGGCGGCAGTTTGGGAGTTGTTGACAAAAGGAATGAGCAAGGAAGAGACAAAGAAAGCAGCAATCATGATATGGTCTATGTAGAATTTCATAAATAGAGTAGCTATCAACAATGAAAAAGAAGATTTCCAGCAGCTTGCAAGAGTGATCAAAAGAAATTTAGAAGAGCTAAGAAAGAGTCAAGACGAGAATCTGAAGCCTAGTAGCTTGGAGAGTCTTGGAAATCAGGATAAATGGAGCCCTCCTCCCCTCAATTGCCTCAAGATTAACACAAATGCTGCGTGGAATTCTAAGTTGGGGAGAGGTCGTGTGGGCTGGATTCTTCGTGATTCCTTAGGGTCTCCCTTGGGTGTTGGCTGCAAACATTTCAATAGAAAGGGGACAATTAAATCGCTGGAGATGCTAGCAATTAAAGAAGGGATCGAGGCTTACCTGACGACAATCCGCAACAGGGGCTCCCCGATTGTTGTGGAGTCGGATGCATCGGAAGTGATTAAAGCTTGGAATTTTGTTTGTGAGGACATTTCAGACACAAAGTTGGTGATGAACAAGGTCGAAGAATTGGTAGCGTCTGCAGGAGTTATCGCCTTTGTTAAAGGCCCAAGGGCTAGAAACAGAGTCGTGCACTCTCTCGCACGAGCGATAACGGGTTTATCGTCGACGTCCTCCCTGTCGATCGATGTAGTCGAGGGATTTTTTGAGTTGTCTATTTTTTGTGATTCTTCCACGCTGGAAGAAATGTTTTTTTGTGGGGATGAGATCATCACAAATTGGCTATCCTCATTAATTCAGGGGGAATTGGTTGTAACAAACTCTCTCTAATTAATGAAGTATTTCTTTTTTAAAAAAATGAGTAAAAAAGTGAACGAAAGAAAATTCTAATACAAAAGAATTTGCAAATCCAATTTTTTTTATTAAAAAAAACGTAAATTAAATAGGTTTATCTTTGTTTCAAATCTAAATTTCTATAGTTATCCAAAAAATTTATTTTGGCAACAAAATAGAGGGAAAACATGTTTAAAAAACGTTGGAATTGAAATTGTGAAAAAAACTAATAACCATTTGGTTTTTGGTTTTTAAAAATTTAAGCCTATAAACATTACTTCCACCTATGTTTTTTGTTTTTATTTCTACCCTCTTTCCATGTTTTCAAAAACCAAGCCAATTTTTCAAAACTAAAAAAATAGTTTTCAAAAACTTTTTTTTGTTTTTGGAATTTGACTAGGAATTCAAATGTGTTCTTAACAAATATGAGAACCATGGTAAAGAAATTGGGACAAAACAAGCTTAGGCCCCGTTTGATAACCATTTGGTTTTTGGTTTTTGGTTTTTGAAAATTATGCTTGTTTCTTTCCAATTTGCTTACTATGGTTTTCATTTTCATTAAGGACACATTTGAATTTCTAACTAAATTCTAAAAACAAAAACAAGTTTTTGAAAACTATTTTTTTTAGTTTTCAAAATTAGACTTGGTTTTTGAAAACAAGAAAGGACATATATAACATAATGAAGAAACTTGTAGATAAAAGTAGTGTTTATAGGCTTAATATTCAAAAACCAAAAATTAAAAACGAAATGGTTATCAAACGGGGCCTTAGTTTTTAGGTTTTTGGTTTTTGAAAATTAAGCTTACAAACACTCCTCCCACCTTAAGTTTCTTTGTTTTTTCATCCACCTTCTTCCCATGTTTTCAAAAACCAAGCCAATTGTTGAAAATTAAAAAAAGTAGTTTTCAAAAACTTGTTTTTGTTTTTGAAATTTGGCTAGGAAGTCATATGTGTCCTTAACAAAGATGAAAACCATGGTAAAGAAATTGGGAGAAAACAAGCATAAATTTCAAAAACCAAAACAAAAAACCAAATGTTTATTAGATGGGACCTTAATTTTCAAAAACCAAAAATCAAATGGATATCAAACGACGCCTATACAACAAAAACAAAATTTACCGACTAAATATTGCTAAAGAAAATTTAAGCTTCTAAACACATCTTGAGAAATTGAAAAAAAAAATATGGAAAATTAATTAAAGTTTTAGAAATGAATGAAAACATAAGTTTCTAAAAAACCTTTTTTGAAATTGAAGAAAAAAAAAGGGGGAAATTACACTTTTTATTAGTTATATTGTTAAGTATGTTGTTATAATTAGTTGTACTTGTATTTAAGTGGTAGTTTAAGCAGTTATCATTGTATTACTGTATAAATATTCTCTCATTACAGTAATAATATACACGGGCAAATACAGAGAGTTTTATCTCTCAAATATATCTTGCTTCTGATATTCGTTTTATGGTATCAGAGCTTCTTGACCAACGTCTTCAAAAAAAATTTTCCATGGCTTCTTCAATGGCATCTTCTTCTTCCACTGCTTCTGAGGCAATTTCTGGTAGCAATCTTCAGTCCAATACCTCCATCTTTCTACTGTCAAATATATGTAATCTTGTCCCAGTGAGACTGGATTCTACGAATTATCTTTTCTGGAGATTCCAAGTTGAATCAATGTTTAGGGCTCATTCCCTCTTTGACATCGTTGATGGATCAAACAAGTGCCCGCCCAAGCATCTGCGCGATGGTGACAATAATCCTCTCTCTGATATCAATCCTGCTTATTCTCTTTGGATCTCTCAAGATCGCGCTCTTATCACACTGATTAATGCCACACTTTCGAAAGCCGCCTTCTCTTTCGTTATCGGCTGTACGTCTTCAAACTCAACATTTTAGTCCCTGAGGTTTGTATTTCGTTACACTCTTGGTCCCTCAGTCAATTTTTCCGTTAAACACTAACAGATTGCTGACGTGTCATTAGTTTTTTATTTCAAAAATATATATTTTTAAAATTTTAAAACAAAATAATATATTAAATATTTTTTATTATTTTTTTCTTTTTCTTTTTTCTTTTCTTTTTTCTTCTTCAATCTTCTTCCTCCATCTTCTTCTTCCCCACCAATCTCTCAAACCCTAATCTCAACTCACCGCCGCCAGCCGCCGGTCATCACCTTCGTTGTCATCGTCGCCGCCGCCGCCATTATCTTTTTTTTTCTCTCTTTTTTCTTCTTCTTCTCTGTAACGCCCCACGTTTCGAAATCAAGCCATTTTGGGATTTGTTAAGCGTTCTTATTCTAATTTGGAAAATTAGAATTTAAGCTTAGCCTTGGGTCGTCAAATTAAATTTCTATAACTTAGGGAAAATGGATATTTAATTAAATCTTTCATTTCCTAAAGTTTGAAGGTTTAATATTTGATATTTTATTTAAGTGTCACATACCAAAATTCCCTCTTAATCAGTATTAATCCCAAATTCTTTCGGAGCTAAGATTGGGTTTAAAATTGAATCTTAGATAAGCCCTAATTCCTAATTATATTGGGTTTTCTTGTATTAGAGTATAAGAAAAAGAAAAGAAAATAAAAAAAAGGACCCCAAAAGCCCTAATTTCATCTTTCTCTCTCTTTCCCCTTCATCTTCACGCAAGGAACCGCCAGCCCCCCTTGCGATTTCTTCCTCGCCGACAGGCCCTCCCAGCGCTGCCACTCCCGTTCCGCCGTGTAGTTGTCGCGTCGCCGTCCGTTTGGTCTCAAGTCGAGCCGTCGCAGCCTCTCCACCCGGTTTCGTCTTTCCTTTCGCGAGTTTGGTGGCTCAAATCTCCTTCTCCCTCTCGTGTTCTATTTGGTCCGAGCATAGCAGCATTGTCGGCGTCTCTTCTCGAACCAGTAGAAGCGACCCTTAAACCTCGAGCGCAGTTTCATCTTCCTCTTTGTCGTTCTGGCTTCAACGTCCTTCAATTCGCGCGTGTTCAGCAAGGTCCAGCCCTCTAGCGACAAGCACTCGACGTTTTCGGTAAGTTAGCCTCGACCCATTCGATTTTCTTCAAGTTTCAGCATGTACCCATGTAGTTTAGTCCTCAAAGTTGTCTTAGATCACGACCCATGCTTGTTTGAGTTCGAATATGGTTTACCCATTCCTTTCGGCTTCTAAATTTCAGGATTAAGGTTCTTTGAAAGCCAAATAACGAGCGTTTGGACTCGAAATTGGTTTTTGACGAATACCCATAACCCGAACAGCCTTGGGATGGAATGCCCATAAGCTAGGAGGTTCGGATTAGTGATTTCGAACTCATTCGGTCACTGGGCAGCAAGCTTGAAGGCCGTTTAAGTGTCGATCGATAAGTTTCCTCACCCTTAAACCTTTGTAATTCAATTTGGTTGGGTTTAGAATAGCCTATAACCTTTGGGTGCTTTGTTAATTTCAGTTTTAACCCAATTCGAACCCAGGGCAGCGCGTGTTCAAAGGAGTTTGGTGCTGGTTAGTAAGTTCCAGCAAGCTTTTGGACTCATTCAGCGTGGTTCGGTAAGCTTCTTCACCTTTTTACCCTTGTTAGAACTCTTCTTAGGCTCTGTTAATTAGTCCCTGATGTTGGAAGTTGTTACTTGTAGCTTGGGACCAATTAGAGCTTACTTGAGTTATTTTCAAACAAATAACTTATCCGGTTTGATGGAGCTTTAAAGGATTCGAAGTTGTTCCAAGTTGTCGATCTTGTCGCCAGGCTTGAATCTAAGTTGGTTTTGGTAAGAAATTCTTCTTTAAGCATTCCTTAGTTTGAATTAAATTGATGAGCTTGATTTTGACCCTTAAGCGTTAATCTATCTATTTAGGAGCCTTTCAAGCTTTTAGGGGCTCTTGGTTTGTTCTTAGGAGCGTTCGTAAGCTATAGGTAAGTAGTTCTTATCTGTTGAGTCTGTTTGATTGCATGATGCACGTTGTTTGCTTACTTGCTTTATAATTGTTCTCTTGTTTCTTTCTTCTCTTTGAATATATATGTATATTTTGGAATGTATGAGTTGTTGTTGTAATGTTTGATTGAAAACATGTCGGTTTGTTGTGAGTGCATGAGTTGTGCATGAAGTGAGCTCATGTTGTGGTATGTATGCTTGGTGGGCATAAAACGTAAATCAAGAAGCGTGATGCAGGCATATGTATTATAGGTAGTTTGGTGTGGTATGTATATGCTTGGTGGGCATAGTACATGAGTCTGTCGTTTATGCTTGGTGGGCATAGTTCATGAGTCTAGAAGCATATTGCAGGAGGGCATATGCATTCTAGATTAAGTGTGAGAAAAGAGGTCAGGGACCTAAAATGTGAAAAAGGGCAAGATCGGTGAATGTCAGTGCACCTCGGGTACAAATGGTCGAGGGGTGACATGTCACCATTGGTTTAAAGAGAACTAGCATTATGATTGAGATATCAGGGCCTCGGGTAGAAATGGTCGAGGGTTGATATTGTTTCGAGGAAAGTAAAGTGATTATCAGGGCCTCGGGTATAAATGGTCGGGGACTGATATATCACTATTGGATGTCGATGCCTCAGGTATAAATGGTCGAGGGTCGATATGCCAATGTTAGATAAAGAGGAGCATCGAGGCCTTGGGTGTAAATGGTCAAGGGTCGGTGTGATGAGTCTTGAGGCAAGTATTGAGGCCTTGGGTATAAATGGTCAAGGGTCAATACGTTGCTTAGTCATCGAGGCCTTGGGTGTAAATGGTCAAGGGTCGATGCACAGTTCGAGGCCTTGGGTATAAATGGTCAAGGGTCGAACACCGAGCTCTGTAGAGAAGTGTCGAGGCCTTAGGTATAAATGGTCAGGGGTCGGTGCAACTCGAAGGGTCAGTCTTGGAGAGTTTTGCGGAGCGTGATGCGGAAATCACGTGTGAAGAGCCATGTGAGGGCTAAATATGAGCGATGAGTGAGCTCGTGGAGTTTGAATGGTTAGCGAATGCATAGAGAGATGCATGAGTCATGGCTTAGGAGAGTCATTCGTGTTATTAGTTCTTGAGCATGTCGTTGTGTTTATCGCTTTAAAAAGCATGTTGTTTGCGCCTGAAAAGCATGTTGTTTGCTTGTTTGTTGTGTGATGGCTTCTCAGGTAGGGGCTGCTTACCAGTACCTTAGTGTACTGACCCCCTCCCCTCTCTCTCCCCCCAACTACTAGATTTTGCAGGTTATGAGGACTGCGTGGACCATGGTGATGCAGAGGAGGCATACGAGGAAGGACCATGGCTAGTTCGCGTTGTTTTCCCTTTTCATTTTCCTTGGATAGGGTAGTTGTGGTTATTATTGTTGGACAGTTGTTTGTCCTGTTAGGTTTAGTTTTGATCATTCTTGTTAATCTCTAGGTCTAGTTGTCTTTGTTGTAAAGAACTCAATCTATTCTTTTAGTTGCTAATAATTAAGTTTGTTTCGAATGAATTGATGTTATAAGCTTTGTTTAAGTTGTGTTTCTGGTTAGTTAGTAGTTGATAATGCGAGGCATGTCTGGCTGTTGGTTTTGAGGAGATCTGTTGTGTTGTAATATGGTGGAGTTGTTGAATAATGCTATTTAGAAGTGTTTTATGCTTAGCAGATTAAAGAAAAATTTTGGGTTAGTCTTATGTGTGTTGTTATGCTGCCGAAATTTTCGATGCACTCGGTTAGTTTTGGTTTAAGAGTTAGTAATGTCGCTGGATAGTTATTAAAAACCTGGGGCGTTACATTCTCTCTCCCCTTCTCCCCTTTTTCTTCTTCTTCCCTCTTCCTCCTTTCTCTTTCCTATTTTACTGTTTTTTTAACAATGGAACACCCATTCAAATCTGAACACTGCCGTCGAGCACGTTGTCGTCGAGCACGAAAACTTGCAAGAACACCCACTCAGATCTGAAACCCCCAAACCGAACACCCAATCGCGTCGTTCCACTTGCAGATCTAGAGTTTTCTGCGTCCCGCCCTTGCGTTGTTCCAGTTGTGCCGTTCGTTTTGGTCCTCGCGCCGTTTCAGTCCAGTCGCGCCGTCGAGCACGAAAACGGCAAGGCTGGTCATTGTTCAGCGTGTAGCAGTTTGATGATGCGGCGACTAAGCGTGGATCCTAGATCTAGGCTTGTCTCGAGTTCCTCCCCACGCACACCTAGATCTCGCCGGAAAGTTTCAGAATCGAAGACCTAG

mRNA sequence

ATGACTCTCCTTAACTCTAGGCATAAGAATTTCATAAATAGAGTAGCTATCAACAATGAAAAAGAAGATTTCCAGCAGCTTGCAAGAGTGATCAAAAGAAATTTAGAAGAGCTAAGAAAGAGTCAAGACGAGAATCTGAAGCCTAGTAGCTTGGAGAGTCTTGGAAATCAGGATAAATGGAGCCCTCCTCCCCTCAATTGCCTCAAGATTAACACAAATGCTGCGTGGAATTCTAAGTTGGGGAGAGGTCGTGTGGGCTGGATTCTTCGTGATTCCTTAGGGTCTCCCTTGGGTGTTGGCTGCAAACATTTCAATAGAAAGGGGACAATTAAATCGCTGGAGATGCTAGCAATTAAAGAAGGGATCGAGGCTTACCTGACGACAATCCGCAACAGGGGCTCCCCGATTGTTGTGGAGTCGGATGCATCGGAAGTGATTAAAGCTTGGAATTTTGTTTGTGAGGACATTTCAGACACAAAGTTGGTGATGAACAAGGTCGAAGAATTGGTAGCGTCTGCAGGAGTTATCGCCTTTGTTAAAGGCCCAAGGGCTAGAAACAGAGTCGTGCACTCTCTCGCACGAGCGATAACGGAGCTTCTTGACCAACGTCTTCAAAAAAAATTTTCCATGGCTTCTTCAATGGCATCTTCTTCTTCCACTGCTTCTGAGGCAATTTCTGGTAGCAATCTTCAGTCCAATACCTCCATCTTTCTACTGTCAAATATATGTAATCTTGTCCCAGTGAGACTGGATTCTACGAATTATCTTTTCTGGAGATTCCAAGTTGAATCAATGTTTAGGGCTCATTCCCTCTTTGACATCGTTGATGGATCAAACAAGTGCCCGCCCAAGCATCTGCGCGATGGTGACAATAATCCTCTCTCTGATATCAATCCTGCTTATTCTCTTTGGATCTCTCAAGATCGCGCTCTTATCACACTGATTAATGCCACACTTTCGAAAGCCGCCTTCTCTTTCGTTATCGGCTGTACGAACCGCCAGCCCCCCTTGCGATTTCTTCCTCGCCGACAGGCCCTCCCAGCGCTGCCACTCCCGTTCCGCCGTGTAGTTGTCGCGTCGCCGTCCGTTTGGTCTCAAGTCGAGCCGTCGCAGCCTCTCCACCCGGTTTCGTCTTTCCTTTCGCGAGTTTGGTGGCTCAAATCTCCTTCTCCCTCTCGTGTTCTATTTGGTCCGAGCATAGCAGCATTGTCGGCGTCTCTTCTCGAACCAGTAGAAGCGACCCTTAAACCTCGAGCGCAGTTTCATCTTCCTCTTTGTCGTTCTGGCTTCAACGTCCTTCAATTCGCGCGTGTTCAGCAAGTTTTAACCCAATTCGAACCCAGGGCAGCGCGTGTTCAAAGGAGTTTGGTGCTGGTTAGTAAGTTCCAGCAAGCTTTTGGACTCATTCAGCGTGGTTCGGATTCGAAGTTGTTCCAAGTTGTCGATCTTGTCGCCAGGCTTGAATCTAAGTTGGTTTTGGAGCCTTTCAAGCTTTTAGGGGCTCTTGGTTTGTTCTTAGGAGCGTTCGTAAGCTATAGGTATAAATGGTCGAGGGTCGATATGCCAATGTTAGATAAAGAGGAGCATCGAGGCCTTGGGTGTAAATGGTCAAGGGTCGGTGTGATGAGTCTTGAGGCAAGTATTGAGGCCTTGGGTATAAATGGTCAAGGGTCAATACGTTGCTTAGTCATCGAGGCCTTGGGTAGAAGTGTCGAGGCCTTAGGTATAAATGGTCAGGGGTCGGTGCAACTCGAAGGGTCAGTCTTGGAGAGTTTTGCGGAGCGTGATGCGGAAATCACGTGTTATGAGGACTGCGTGGACCATGGTGATGCAGAGGAGGCATACGAGGAAGGACCATGGCTAGTTCGCGTTGTTTTCCCTTTTCATTTTCCTTGGATAGGCACGTTGTCGTCGAGCACGAAAACTTGCAAGAACACCCACTCAGATCTGAAACCCCCAAACCGAACACCCAATCGCGTCGTTCCACTTGCAGATCTAGAGTTTTCTGCGTCCCGCCCTTGCGTTGTTCCAGTTGTGCCGTTCGTTTTGGTCCTCGCGCCGTTTCAGTCCAGTCGCGCCGTCGAGCACGAAAACGGCAAGGCTGGTCATTGTTCAGCGTGTAGCAGTTTGATGATGCGGCGACTAAGCGTGGATCCTAGATCTAGGCTTGTCTCGAGTTCCTCCCCACGCACACCTAGATCTCGCCGGAAAGTTTCAGAATCGAAGACCTAG

Coding sequence (CDS)

ATGACTCTCCTTAACTCTAGGCATAAGAATTTCATAAATAGAGTAGCTATCAACAATGAAAAAGAAGATTTCCAGCAGCTTGCAAGAGTGATCAAAAGAAATTTAGAAGAGCTAAGAAAGAGTCAAGACGAGAATCTGAAGCCTAGTAGCTTGGAGAGTCTTGGAAATCAGGATAAATGGAGCCCTCCTCCCCTCAATTGCCTCAAGATTAACACAAATGCTGCGTGGAATTCTAAGTTGGGGAGAGGTCGTGTGGGCTGGATTCTTCGTGATTCCTTAGGGTCTCCCTTGGGTGTTGGCTGCAAACATTTCAATAGAAAGGGGACAATTAAATCGCTGGAGATGCTAGCAATTAAAGAAGGGATCGAGGCTTACCTGACGACAATCCGCAACAGGGGCTCCCCGATTGTTGTGGAGTCGGATGCATCGGAAGTGATTAAAGCTTGGAATTTTGTTTGTGAGGACATTTCAGACACAAAGTTGGTGATGAACAAGGTCGAAGAATTGGTAGCGTCTGCAGGAGTTATCGCCTTTGTTAAAGGCCCAAGGGCTAGAAACAGAGTCGTGCACTCTCTCGCACGAGCGATAACGGAGCTTCTTGACCAACGTCTTCAAAAAAAATTTTCCATGGCTTCTTCAATGGCATCTTCTTCTTCCACTGCTTCTGAGGCAATTTCTGGTAGCAATCTTCAGTCCAATACCTCCATCTTTCTACTGTCAAATATATGTAATCTTGTCCCAGTGAGACTGGATTCTACGAATTATCTTTTCTGGAGATTCCAAGTTGAATCAATGTTTAGGGCTCATTCCCTCTTTGACATCGTTGATGGATCAAACAAGTGCCCGCCCAAGCATCTGCGCGATGGTGACAATAATCCTCTCTCTGATATCAATCCTGCTTATTCTCTTTGGATCTCTCAAGATCGCGCTCTTATCACACTGATTAATGCCACACTTTCGAAAGCCGCCTTCTCTTTCGTTATCGGCTGTACGAACCGCCAGCCCCCCTTGCGATTTCTTCCTCGCCGACAGGCCCTCCCAGCGCTGCCACTCCCGTTCCGCCGTGTAGTTGTCGCGTCGCCGTCCGTTTGGTCTCAAGTCGAGCCGTCGCAGCCTCTCCACCCGGTTTCGTCTTTCCTTTCGCGAGTTTGGTGGCTCAAATCTCCTTCTCCCTCTCGTGTTCTATTTGGTCCGAGCATAGCAGCATTGTCGGCGTCTCTTCTCGAACCAGTAGAAGCGACCCTTAAACCTCGAGCGCAGTTTCATCTTCCTCTTTGTCGTTCTGGCTTCAACGTCCTTCAATTCGCGCGTGTTCAGCAAGTTTTAACCCAATTCGAACCCAGGGCAGCGCGTGTTCAAAGGAGTTTGGTGCTGGTTAGTAAGTTCCAGCAAGCTTTTGGACTCATTCAGCGTGGTTCGGATTCGAAGTTGTTCCAAGTTGTCGATCTTGTCGCCAGGCTTGAATCTAAGTTGGTTTTGGAGCCTTTCAAGCTTTTAGGGGCTCTTGGTTTGTTCTTAGGAGCGTTCGTAAGCTATAGGTATAAATGGTCGAGGGTCGATATGCCAATGTTAGATAAAGAGGAGCATCGAGGCCTTGGGTGTAAATGGTCAAGGGTCGGTGTGATGAGTCTTGAGGCAAGTATTGAGGCCTTGGGTATAAATGGTCAAGGGTCAATACGTTGCTTAGTCATCGAGGCCTTGGGTAGAAGTGTCGAGGCCTTAGGTATAAATGGTCAGGGGTCGGTGCAACTCGAAGGGTCAGTCTTGGAGAGTTTTGCGGAGCGTGATGCGGAAATCACGTGTTATGAGGACTGCGTGGACCATGGTGATGCAGAGGAGGCATACGAGGAAGGACCATGGCTAGTTCGCGTTGTTTTCCCTTTTCATTTTCCTTGGATAGGCACGTTGTCGTCGAGCACGAAAACTTGCAAGAACACCCACTCAGATCTGAAACCCCCAAACCGAACACCCAATCGCGTCGTTCCACTTGCAGATCTAGAGTTTTCTGCGTCCCGCCCTTGCGTTGTTCCAGTTGTGCCGTTCGTTTTGGTCCTCGCGCCGTTTCAGTCCAGTCGCGCCGTCGAGCACGAAAACGGCAAGGCTGGTCATTGTTCAGCGTGTAGCAGTTTGATGATGCGGCGACTAAGCGTGGATCCTAGATCTAGGCTTGTCTCGAGTTCCTCCCCACGCACACCTAGATCTCGCCGGAAAGTTTCAGAATCGAAGACCTAG

Protein sequence

MTLLNSRHKNFINRVAINNEKEDFQQLARVIKRNLEELRKSQDENLKPSSLESLGNQDKWSPPPLNCLKINTNAAWNSKLGRGRVGWILRDSLGSPLGVGCKHFNRKGTIKSLEMLAIKEGIEAYLTTIRNRGSPIVVESDASEVIKAWNFVCEDISDTKLVMNKVEELVASAGVIAFVKGPRARNRVVHSLARAITELLDQRLQKKFSMASSMASSSSTASEAISGSNLQSNTSIFLLSNICNLVPVRLDSTNYLFWRFQVESMFRAHSLFDIVDGSNKCPPKHLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVIGCTNRQPPLRFLPRRQALPALPLPFRRVVVASPSVWSQVEPSQPLHPVSSFLSRVWWLKSPSPSRVLFGPSIAALSASLLEPVEATLKPRAQFHLPLCRSGFNVLQFARVQQVLTQFEPRAARVQRSLVLVSKFQQAFGLIQRGSDSKLFQVVDLVARLESKLVLEPFKLLGALGLFLGAFVSYRYKWSRVDMPMLDKEEHRGLGCKWSRVGVMSLEASIEALGINGQGSIRCLVIEALGRSVEALGINGQGSVQLEGSVLESFAERDAEITCYEDCVDHGDAEEAYEEGPWLVRVVFPFHFPWIGTLSSSTKTCKNTHSDLKPPNRTPNRVVPLADLEFSASRPCVVPVVPFVLVLAPFQSSRAVEHENGKAGHCSACSSLMMRRLSVDPRSRLVSSSSPRTPRSRRKVSESKT
Homology
[Close]
BLAST of Spg027624 vs. NCBI nr
Match: TYJ97594.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-23
Identity = 62/121 (51.24%), Postives = 86/121 (71.07%), Query Frame = 0 

Query: 209 SMASSMASSSSTASEAISGSNLQSNTSIFLLSNICNLVPVRLDSTNYLFWRFQVESMFRA 268
           S  S ++ +S+   E+ S   + ++T +FLLSNICNLVP+RLDSTNY+ W++QV S+ +A
Sbjct: 5   SFQSDLSKTSNPIPESSSNPYVPTST-LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKA 64

Query: 269 HSLFDIVDGSNKCPPKHLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVI 328
           HSLF  +D +  CPPKHL        S+INP Y  W+S+D+ALITLINATLS +A + V+
Sbjct: 65  HSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINATLSSSALTHVV 124

Query: 329 G 330
           G
Sbjct: 125 G 124

[Close]
BLAST of Spg027624 vs. NCBI nr
Match: KAA0056771.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-23
Identity = 62/121 (51.24%), Postives = 86/121 (71.07%), Query Frame = 0 

Query: 209 SMASSMASSSSTASEAISGSNLQSNTSIFLLSNICNLVPVRLDSTNYLFWRFQVESMFRA 268
           S  S ++ +S+   E+ S   + ++T +FLLSNICNLVP+RLDSTNY+ W++QV S+ +A
Sbjct: 5   SFQSDLSKTSNPIPESSSNPYVPTST-LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKA 64

Query: 269 HSLFDIVDGSNKCPPKHLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVI 328
           HSLF  +D +  CPPKHL        S+INP Y  W+S+D+ALITLINATLS +A + V+
Sbjct: 65  HSLFGHIDDTLPCPPKHLPSSTLGTNSEINPKYLQWLSRDQALITLINATLSSSALTHVV 124

Query: 329 G 330
           G
Sbjct: 125 G 124

[Close]
BLAST of Spg027624 vs. NCBI nr
Match: TYK11141.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 5.9e-23
Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 0 

Query: 226 SGSNLQSNTS-IFLLSNICNLVPVRLDSTNYLFWRFQVESMFRAHSLFDIVDGSNKCPPK 285
           S SN    TS +FLLSNICNLVP+RLDSTNY+ W++QV S+ +AHSLF  +D +  CPPK
Sbjct: 48  SSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPK 107

Query: 286 HLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVIG 330
           H         S+INP Y  W+S+D+ALITLINATLS +A + V+G
Sbjct: 108 HSPSSTLRTNSEINPEYVQWLSRDQALITLINATLSSSALAHVVG 152

[Close]
BLAST of Spg027624 vs. NCBI nr
Match: KAA0067173.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-22
Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 0 

Query: 209 SMASSMASSSSTASEAISGSNLQSNTSIFLLSNICNLVPVRLDSTNYLFWRFQVESMFRA 268
           S  S ++ +S+   E+ S S + ++T +FLLSNICNLVP+RLDSTNY+ W++QV S+ +A
Sbjct: 5   SSQSDLSETSNPILESSSNSFVPTST-LFLLSNICNLVPIRLDSTNYILWKYQVSSILKA 64

Query: 269 HSLFDIVDGSNKCPPKHLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVI 328
           HS F  +D +  CPPKHL        S+INP Y  W+S+ +ALITLINATLS +A + V+
Sbjct: 65  HSFFGHIDDTLPCPPKHLSSSTLGTNSEINPEYLQWLSRSQALITLINATLSSSALAHVV 124

Query: 329 G 330
           G
Sbjct: 125 G 124

[Close]
BLAST of Spg027624 vs. NCBI nr
Match: TYK08059.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-22
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 0 

Query: 209 SMASSMASSSSTASEAISGSNLQSNTSIFLLSNICNLVPVRLDSTNYLFWRFQVESMFRA 268
           S  S +  +S+   E+ S  ++ ++T +FLLSNICNLVP+RLDSTNY+ W++QV S+ +A
Sbjct: 5   SSQSDLPETSNPIPESSSNPSVSTST-LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKA 64

Query: 269 HSLFDIVDGSNKCPPKHLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVI 328
           HSLF  +D +  CPPKHL        S INP Y  W+S+D+ALITLINATLS +A + V+
Sbjct: 65  HSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWLSRDQALITLINATLSSSALTHVV 123

[Close]
BLAST of Spg027624 vs. ExPASy TrEMBL
Match: A0A5D3BEU0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00250 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.9e-24
Identity = 62/121 (51.24%), Postives = 86/121 (71.07%), Query Frame = 0 

Query: 209 SMASSMASSSSTASEAISGSNLQSNTSIFLLSNICNLVPVRLDSTNYLFWRFQVESMFRA 268
           S  S ++ +S+   E+ S   + ++T +FLLSNICNLVP+RLDSTNY+ W++QV S+ +A
Sbjct: 5   SFQSDLSKTSNPIPESSSNPYVPTST-LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKA 64

Query: 269 HSLFDIVDGSNKCPPKHLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVI 328
           HSLF  +D +  CPPKHL        S+INP Y  W+S+D+ALITLINATLS +A + V+
Sbjct: 65  HSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINATLSSSALTHVV 124

Query: 329 G 330
           G
Sbjct: 125 G 124

[Close]
BLAST of Spg027624 vs. ExPASy TrEMBL
Match: A0A5A7UTE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00610 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.9e-24
Identity = 62/121 (51.24%), Postives = 86/121 (71.07%), Query Frame = 0 

Query: 209 SMASSMASSSSTASEAISGSNLQSNTSIFLLSNICNLVPVRLDSTNYLFWRFQVESMFRA 268
           S  S ++ +S+   E+ S   + ++T +FLLSNICNLVP+RLDSTNY+ W++QV S+ +A
Sbjct: 5   SFQSDLSKTSNPIPESSSNPYVPTST-LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKA 64

Query: 269 HSLFDIVDGSNKCPPKHLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVI 328
           HSLF  +D +  CPPKHL        S+INP Y  W+S+D+ALITLINATLS +A + V+
Sbjct: 65  HSLFGHIDDTLPCPPKHLPSSTLGTNSEINPKYLQWLSRDQALITLINATLSSSALTHVV 124

Query: 329 G 330
           G
Sbjct: 125 G 124

[Close]
BLAST of Spg027624 vs. ExPASy TrEMBL
Match: A0A5D3CH60 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00480 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.9e-23
Identity = 60/105 (57.14%), Postives = 76/105 (72.38%), Query Frame = 0 

Query: 226 SGSNLQSNTS-IFLLSNICNLVPVRLDSTNYLFWRFQVESMFRAHSLFDIVDGSNKCPPK 285
           S SN    TS +FLLSNICNLVP+RLDSTNY+ W++QV S+ +AHSLF  +D +  CPPK
Sbjct: 48  SSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDTLPCPPK 107

Query: 286 HLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVIG 330
           H         S+INP Y  W+S+D+ALITLINATLS +A + V+G
Sbjct: 108 HSPSSTLRTNSEINPEYVQWLSRDQALITLINATLSSSALAHVVG 152

[Close]
BLAST of Spg027624 vs. ExPASy TrEMBL
Match: A0A5A7VGG0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00280 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.9e-23
Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 0 

Query: 209 SMASSMASSSSTASEAISGSNLQSNTSIFLLSNICNLVPVRLDSTNYLFWRFQVESMFRA 268
           S  S ++ +S+   E+ S S + ++T +FLLSNICNLVP+RLDSTNY+ W++QV S+ +A
Sbjct: 5   SSQSDLSETSNPILESSSNSFVPTST-LFLLSNICNLVPIRLDSTNYILWKYQVSSILKA 64

Query: 269 HSLFDIVDGSNKCPPKHLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVI 328
           HS F  +D +  CPPKHL        S+INP Y  W+S+ +ALITLINATLS +A + V+
Sbjct: 65  HSFFGHIDDTLPCPPKHLSSSTLGTNSEINPEYLQWLSRSQALITLINATLSSSALAHVV 124

Query: 329 G 330
           G
Sbjct: 125 G 124

[Close]
BLAST of Spg027624 vs. ExPASy TrEMBL
Match: A0A5D3CCL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002070 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-23
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 0 

Query: 209 SMASSMASSSSTASEAISGSNLQSNTSIFLLSNICNLVPVRLDSTNYLFWRFQVESMFRA 268
           S  S +  +S+   E+ S  ++ ++T +FLLSNICNLVP+RLDSTNY+ W++QV S+ +A
Sbjct: 5   SSQSDLPETSNPIPESSSNPSVSTST-LFLLSNICNLVPIRLDSTNYVLWKYQVSSILKA 64

Query: 269 HSLFDIVDGSNKCPPKHLRDGDNNPLSDINPAYSLWISQDRALITLINATLSKAAFSFVI 328
           HSLF  +D +  CPPKHL        S INP Y  W+S+D+ALITLINATLS +A + V+
Sbjct: 65  HSLFGHIDDTLPCPPKHLPSSTLGTNSKINPGYLQWLSRDQALITLINATLSSSALTHVV 123

[Close]
BLAST of Spg027624 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-08
Identity = 48/184 (26.09%), Postives = 82/184 (44.57%), Query Frame = 0 

Query: 13  NRVAINNEKEDFQQLARVIKRNLEELRKSQDENLKPSSLESLGNQD-KWSPPPLNCLKIN 72
           N +    ++ D  ++ R    + EE    ++   K S  +   N   +W  PP   +K N
Sbjct: 89  NELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKAPPYQWVKCN 148

Query: 73  TNAAWNSKLGRGRVGWILRDSLGSPLGVGCKHFNRKGTIKSLEMLAIKEGIEAYLTTIRN 132
           T+A W  +  R  +GWILR+  G  L +G +   R   +   E+ A++    A LT  R 
Sbjct: 149 TDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALR---WAVLTMSRF 208

Query: 133 RGSPIVVESDASEVIKAWNFVCEDISDT-KLVMNKVEELVASAGVIAFVKGPRARNRVVH 192
               I+ ESDA  ++   N   +D   T +  +  +++L+     + F   PR  N+V  
Sbjct: 209 NYKRIIFESDAQALVNLLN--SDDFWPTLQPALEDIQQLLHHFEEVKFEFTPRGGNKVAD 267

Query: 193 SLAR 195
            +AR
Sbjct: 269 RIAR 267

[Close]
BLAST of Spg027624 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-08
Identity = 52/207 (25.12%), Postives = 98/207 (47.34%), Query Frame = 0 

Query: 13  NRVAINNEKEDFQQLARVIKRNLEELR-KSQDENLKPSSLESLGNQDKWSPPPLNCLKIN 72
           N +     + + Q++ R  + +LEE R +++ E+       +  +  +W PPP   +K N
Sbjct: 372 NELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCN 431

Query: 73  TNAAWNSKLGRGRVGWILRDSLGSPLGVGCKHFNRKGTIKSLEMLAIKEGIEAYLTTIRN 132
           T+A WN    R  +GW+LR+  G    +G +   +  ++   E+ A++    A L+  R 
Sbjct: 432 TDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMR---WAVLSLSRF 491

Query: 133 RGSPIVVESDASEVIKAWNFVCEDISDTKLVMNKVEELVASAGVIAFVKGPRARNRVVHS 192
           + + ++ ESD+  +I+  N   E     K  +  ++ L++    + FV  PR  N +   
Sbjct: 492 QYNYVIFESDSQVLIEILN-NDEIWPSLKPTIQDLQRLLSQFTEVKFVFIPREGNTLAER 551

Query: 193 LARAITELLDQRLQKKFSMASSMASSS 219
           +AR     L+    K +S+  S A SS
Sbjct: 552 VARESLSFLNYD-PKLYSIVPSWARSS 573

[Close]
BLAST of Spg027624 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.3 bits (103), Expect = 5.0e-04
Identity = 24/82 (29.27%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 37  ELRKSQDENLKPSSLESLGNQDKWSPPPLNCLKINTNAAWNSKLGRGRVGWILRDSLGSP 96
           +++   D+N+K    +S    DKW  P    +K N + + ++      + WI+R+S G+ 
Sbjct: 8   DVKHKNDDNVKGGQTKS-SRTDKWQKPGAEWVKCNYDVSNHAGRQDSGLRWIIRNSQGTC 67

Query: 97  LGVGCKHFNRKGTIKSLEMLAI 119
           L  GC  F  + TIK  E  A+
Sbjct: 68  LDCGCGKFQGRQTIKEAECTAL 88

The following BLAST results are available for this feature:
BLAST of Spg027624 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ97594.12.0e-2351.24putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0056771.12.0e-2351.24putative mitochondrial protein [Cucumis melo var. makuwa][more]
TYK11141.15.9e-2357.14putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0067173.11.0e-2250.41retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon p... [more]
TYK08059.11.3e-2250.83retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Spg027624 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027624 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BEU09.9e-2451.24Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7UTE59.9e-2451.24Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3CH602.9e-2357.14Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7VGG04.9e-2350.41Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CCL26.4e-2350.83Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg027624 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G34320.12.6e-0826.09Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT4G29090.14.4e-0825.12Ribonuclease H-like superfamily protein [more]
AT3G23320.15.0e-0429.27Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 21..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 718..743
NoneNo IPR availablePANTHERPTHR33033:SF67SUBFAMILY NOT NAMEDcoord: 57..218
NoneNo IPR availablePANTHERPTHR33033POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 57..218
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 67..200
e-value: 1.8E-7
score: 33.2
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 71..194
e-value: 1.5E-12
score: 47.4
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 70..194
e-value: 1.39245E-12
score: 63.102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg027624.1Spg027624.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity