Spg027547 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg027547
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	YrdC-like domain-containing protein
Location	scaffold11: 3897356 .. 3904151 (+)
RNA-Seq Expression	Spg027547
Synteny	Spg027547

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAAAAAAATTGTTCTCTTTACTTTCTGCTAAACCCCCTTGGGGTTGGCTTCTTGGTGACGGCGGTTGGGAGCTAGGGCAGAAGCAGTTGGACCTCCATGAACACGCTTCCGGCAAAAATGGTCGACAGCCTCTCTCTAATCAGAACGTTTGCAACTTTTCCCTCTTCTCATCTAGGTTCGCTTTGATACGCTTCAACTGTTTTTTTTTATGTATGATTATTGGAGGATTGAAACATGGATTGACACAGATTCTTAAATTTTAGGTGCTCCCAATTGTGGGCTAGTTTCGTTCTTGCATCAAAATAGAGGATCAAGGGTGAGTTTTCCTAAAACGACATGGAGTTTCGAAAAATGTTGTATGCGCGTGGAGAACAGTTTGCAAGCACTTCGCCCTGCCTCCGAAGCTTTTGCTCAAGAGGCTACCGAAGCTCTTAGAGCTGGAAAGGTTATCGCTGTTCCCACTGATACTCTCTACGGACTCGCTTGTGATGCTTGGTATGACATTCCCGTTATTGTTGTTTGTGTAATTGCCTTTCTTATTTTGTGGGTTTTTGTTCTTTTCGTTGCGGAATTTGAGGTGACAACATGTTCCGTTATTCTTTTGCCAGTGATGAAAGTATTATAACAATAGTTATATAAATCTTTCTTAAGATGAAGCCTTCGTGGGAGGTGTAGGTGGGAAGAACCTCCAAATATTCCAAATTTTCTTATAGAAAAGAGAGTGATATTTGTGATCTTGTTTAGTGCAGAGTTTTTGGGGAGAGGTCTTGACCAGGAGTGTGTGTCTCACTCCCTTGGTTGAGTTATGGGTGGTGATTTTATGAGCGTAGGTGGCAGGTCTCTCACGGTTGCTAAGATTGAGAGACTTTTTTGAGTTGGCAGGCAGTCTTTTGGGGGAAACGTGGTGGTAATGGAGAACAGTAGGGAGAGGTCATCTTCTTTAGTTCTGTTACTAGGTTAGGTGGTGTGGGTGAAGGATCGCTTGGTTGGAATTTTGATATTGGTATGGCTAGTTTCAAATATTAGAGGAAAATGTTGCATGATAGCTTAGGAGAATCTTGATGGGAAGGTCATTGCTCTTTATTCCTACAGATACGGAGGAGGATGAGTGGAGAATCTTCAAGGAGAAACTGGGAGTACTTTTGTTGTGGTGTTTGAACCTTCCTTCACCCTTTCAGAAGATGGTTAAGGAATCTGTTGCTTTGCTAGGGGAAGGGTGTTCAGTGAAGGAGGGCGTGGTCGAGTTTGTTTTTGATACTAGAAGAGTGATTTTGGTGCTATAGGAAGGCTTTTCTAATCCTTGCTCTTTGATTAATAATGGATTATGAGAAGTTTGGTTACTGGAATGAAGTTGAACTTTTCTATGGTAATGCAACACTCATTTCAGTTGTGCAATTGGTTTAGTTCTGTGGAACGCGAGTTGGTTTATGGTTGGTAGATCAACAATGTTCTTGTGTGGATGGGTGAGAGTGATTGAGGAAATGGCCCCCTCATTTGCATTTGTTAGAATTGTTTTGTAAAGGTAGATCTTTGTTGCGGGTGGGACAATGAAAATGTTGTTGTGGTTTAGGGGAGACTTTGTGAGAGGATGTCTGTTTATAGCTTGTGGAAGGAGGAGATGGGCTCATTTTATTTCGGTGTTCCATCAATTGTGAATGATAGTCTTATTCCATGCATTTCTTCCTTGGTGATGGTCCTGTGTTTGGTGTTGGGGTGGGCTACTGGAAGAGATCCTTTTTTTTTTTTGACAATTTTGTGGAGTATTTTCACTGAAAAACATTAAAGAATTTTCAGAGTGAATGACAACCATCGAGAGAGGTCTCATGAAAAAGAGCCCTCTGGAGAGGTGTGGTCTGGGATCCTCGTTTGGGCCTTAGTTTCTAAGGATTTCTATATTTATCTGTCTCTTTTGTTCTACAACTAGAACCCTTTTTGTTTTTTTTTTTTAAGAAAATTGTTAGGCTAGTTTTGTGGTAGGCTCTGTTTTCTTTTTTGTATTGTCCATTGTGTTCTTTCATTTGTCTTAACAATAGCTTAGTTTTCATGGAGAATAACAATAGAAAATGGACTTTAGGTAAAATTTTATTCTTGAACTCCAATGTCAATATTTATTATCCTGATTTGTGCATAAAACAGTCGATTGTTTAAAAGAAGATAAAATTATCTTTTGTTAAATCTTGAATTCGATAGTGGACAGTCATCTCAAAAACATATTTACTTTTATTTGGTTGCCTATATCCCTCTGAGTGTGCCCTTTCCTGTTCTCAAATCCACTATTTTTCCGGTTTGATAGAATAATTCCATTACTGCATGGATTCTGAGGGAAATACTGCATAGTGATTGATGTTATAAAATTGAGGAATCATTATGAAATACATCATTGTGTTAGAATATAATTGTTACCACACTCTTTAGGATCTAAAAATGGTTAATACTTTTAGAATACTTTTTCAATTTTTTTTAAAACACTCTTCCTTAATTATATGGTGTCTCTATAATTTTGTTAAATCATGAGATGTATTTTTCAGAAAGGAGGGTAACACTAATCATTTCGGAAGCGCATAAGCAAAAAGTTCATGAACAAAATTGAAGAGAGGTGTTTTCCTGTTTGTGAAATTATATGCACAAAGTAACCATTTATAAACTTAATAACGTTGAACTTCACATTTATATTTAACTGTGGACTCTGTGGGGATTAATTTTGCAGTTCTTCTGAAGCAGTCAATAGGATTTACGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTCCTGGTTTGCTTGATTCTCTCCTTCCAGGACCTGTGACTGTTGTATTAAAAAGAGGTTTGTATTACAAATCTTCTTCTTTTTGCTGAGATAATAAACAATGCATTAAGGTTGAAGTACTTTTAAACAATTAACCTTCAGGAGCATTACTTGATTGAAAATAAGTAGACAAGTAACTATTTTATAGGGTAGGGTACTTGACAACTGTTGGGCAGGTTAAAACAATCTGTTCGATATTCTGTTCTTTTTACCTGATCCCATATCAGTTCTTGGTGACTTGTGGCCTATACTTAAACTTGTGGCCTATACTTAAATGTGAGAAGCAGCTAGGCTGCTGTTCTTGCTTATTAACTTTTTTCTCTCATGAAATTTTAGCAGAAAATTATTTAAATGGTTGTCCACATGTCACACTTAGGAGGGCTTTTTTCACCTATAAAAACATGATATTCATTTTGCATATCCCTTATTAATGGATTGTACTGTAAATATTTAAATGGTTGTCCACATGTCACACCCGCACATCCAAGAACATATTCATTTAGATTTTAGTCTCTAACCTTCCCGTAGTCTGAGTTTTTTACATTTAGGCATTTTGCAGGCGAGTCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTCCGTGTACCTGATGCTGACTTTATTCGGCTTATTTCCCGTAGATCAGAGACGGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTAATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTATATGATGGTGGTGTTCTTCCTGCTGGACGAGCAGGTTCTACAATTGTCGACCTCACCAAGCGAGGGATATTTAAGATCATCAGAGCTGGAAGGTACGTTTCTTCTTGTGATTCTTCTATTTTCCTTGTATAATTAGTGAAAATAGTCGCCTCCTGCAATGACTTTGTCCTGTAGTCCTGAAATTGTGAGGGAAAAATATCAGAATTTTGTTTTTGGCCTTTTCTTGTTTAGCATGGTTCATTTGTTGCCCTGCTCCGGAGTAGAGCTTTTGCCAAACTCCAGGAGCTAACAGTACTATCTCAAGTCTTTTAACTCTCCTTTAGAGAGCTTTCGAGATGGCATTACGAGTTCCATCCTCGTAGTCGTATCATTTTGTGTTACTAAATTCATTAGAAAGAATAGAGGGTGAAGTTGGATAAATAACTTTGTTAAATTAATATCAACAAGGCCTAGACCTATGCATTGTGTTGATGTTATGTGAATCTAATTTTAAAGCTTGAAATTAGTTTAATTATGTATCCAATATTTGAATGGTAATTCTATGTAGTTCTTGTTGATTAAATAATAAAGTAGGACGTTTATTGTATAAACGTCGGTTGATTTGTCGAACTGTTATATAAACAGGGTTCCCTCTACCCGGGCCCCTAAGCTGTTTTTTTGGGGCCCGCTTCACAAGTTTAAATACTGTTCAACATACTACTCTCCGTTTAAGCTACATGTCAAATCTATTTGTAGAGTACTGTTTTATTTTGTTTGATCAATCGATGTTTGTTTATTAGACATATCGCGTCATCATTGTTTTGATAATATTAACGGTAAAGATTACATGACATCACAGATCAAAGTTTAGAGATATAGTTGAAAGTTTTAAACGTTTTTGGAGCTAAATTGAACCATCTCGAAATTTCGGAATCAAAAGCATGAAGCAAGGAAGTGCTTTCTATTTCTTTGTGATAGTTCTCTCCCGCTGCACCAAGTACTAAACCCTACTTATCTATTGACAATGCTGTGTATCATGATATTGATTTTACATTTGCAGTGCAAAGGAGCAGACTGTTGCAACGCTTGAAAGGTATTCACTGTCAGAAGAAGCAGCTAGTATTTGAGCATCAGAATCTTGTCAAGTTCCCAAGCATCTGTTAATTATTATAGAGGTTGCAAAGATTTCTTTTGTAGGCCGAGTAAAAGTAGATTAAAGACATTTTTTGAATGACCAAAATTACTTTTTTCATGTCCAAAATCACTAAGAAAGGACATTACAGAAGTGATTTTAGTCGTTTCAAAATCACTCACAAACATGTTTCTGTCTTGTGACTTCTAACACTTCATTTCTAACTACCATATTGGCCTTTGTCTCTGAAGTTTTGTTTTGTTCTTTTGTTTTTTATTTTTATTTTTTTAATGATTATGTAACATTTGGATTATTTGCTAAATACTACTATACTGTATTATGAGAACTTCACTAATACTTTGGAATGAGAAAAACTTTTAATTTTGCGAATCACTTACAGAAAAGGTTCAGAGAAGAAAGAGGAAACGTAAATAAAAAAAATGTGGTGGGATGTTTGTAGATGAATGGTATGGACATTCTTTAACAATTCAGTGAGTTTGGTATGTCTTCTAAATTAAACACTCTTTATAAAAAAAATGGTTTTTAATCAAGATATTTGTTGATCGGTTATAGTTTCGTAAATCTCATTTGAATCCAAAGTTTTTTTATTCTACTATATCTAAAAATGGTTTTACAAGTGCTAAATTACTTTAAAGTGATTTTTGGTTGATCATTAGTAATCAATTTTAGAGTAATTATTTTAAAAATTATTCTAAATCAATTTGTTCATTTAAAAAATTATTTTCATTTGTTATCAAATGATCTAGATTAGAAAAAACATTTTTGGTCTTCAAAACCAGTTAAGAAGTCAATTTTAAGATACATAAATGTTTGGTTACGAATGAAAATCACTTGTGAAATAGTCAAATTGATTTAAATTCATTTTTTGAAGAATTGTTTTAAAGCTGATAATCCGAAAGGCAATTGTATTCATCATGTAGTGGTTGTGCAACCAAATAACTTATTTTTTTTTTTAAAAAAAAACTAAAATCACTATTAAGGAAAAAATAACCAAAACATACTAAGGGCTCGTTTGATAACGTTCCTATTTCTTGTTCCCGTTTCTCATTTTTTAAGAAACAGACGCGTTTGATAACTCATCCATATTTCTTGTTTCTAAATTTCTAGAAACGTTTCAAAAAAAGAGGCAAAATTTGAGAAACTACAAAAAGTTGTTTCTCAATTTTTTTTTTTTTTTAAATCTTTCATGCATGTATCCATCTCTCTCCCATTCCTACACCAATCTCTTCCCTTCCTCTCTCTATTTTTTTTCACTTCCTTGTTTTTTTTTAATTTATATTTTCCGTTATTTCGTTCTCTTTCCTTTTTTTTTTTCTTTTTTCCATTATTTCTTTCTCTTTCATTTTTTTTTATTATTTCTATTATTTCTTTTTTTTTTATCACCTTCGTCGACTAGCCACCATTGTCGACCTTTGGCTACCGACCGCCACTGACCTCCGCCGACCGATCGCCACCGTTGACCTTCGACTACCGGTCGTCGCCGACCTTCGTCGACCAGCCGCCACCGTCGACCTCCAACTACCAGCCGCCTCCGACCTTCGTCGACCAGCCGCCACTGTCGACCTCCGACTACCAGCCGCCATCGTTGACCTCCGACTATCAGGAACTGCCGACCAGCTGCCACCGTCGACCTATGACTATTGGCTGTCATTGTCGACCTCCGACTACCGGTCGTCACCATTGACCTCTGCCTACCGGCCGCTGCCGACCTCTGTCGACCAGCCGCCACCGTTGACCTCCGACTCCGATCGTCGTCGACCTCTGTTGACGAGCCGCCATCGTCGACCCTCCGATTACCAGCCGCTGTCGACTTCCACCGACCAGTCACCACCGTCAATCTCCGACTACCGACCGCCACCGTTGACCTCCGACTACAGGTCACCGCCGACCTCCGTGGACCGACCGCCACCATGGACCTCTAACTACAGGTTGTCGCCGACTCCGCCGACTGACCGCTACCGTCGACCTCCGACTACTGGCCGCCACCGTCGACCTCCGAGTACTGGCCGCTGTGCCGCTGACTGA

mRNA sequence

ATGAACACGCTTCCGGCAAAAATGGTCGACAGCCTCTCTCTAATCAGAACGTTTGCAACTTTTCCCTCTTCTCATCTAGGTGCTCCCAATTGTGGGCTAGTTTCGTTCTTGCATCAAAATAGAGGATCAAGGGTGAGTTTTCCTAAAACGACATGGAGTTTCGAAAAATGTTGTATGCGCGTGGAGAACAGTTTGCAAGCACTTCGCCCTGCCTCCGAAGCTTTTGCTCAAGAGGCTACCGAAGCTCTTAGAGCTGGAAAGGTTATCGCTGTTCCCACTGATACTCTCTACGGACTCGCTTGTGATGCTTGGCAGTCTTTTGGGGGAAACGTGGTGGTAATGGAGAACAGTAGGGAGAGGTCATCTTCTTTAGTTCTGTTACTAGATACGGAGGAGGATGAGTGGAGAATCTTCAAGGAGAAACTGGGAGTACTTTTGTTGTGGTGTTTGAACCTTCCTTCACCCTTTCAGAAGATGGTTAAGGAATCTGTTGCTTTGCTAGGGGAAGGGTGTTCAGTGAAGGAGGGCGTGGTCGAGTTTTTGTGCAATTGGTTTAGTTCTGTGGAACGCGAGTTGGTTTATGGTTGTTCTTCTGAAGCAGTCAATAGGATTTACGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTCCTGGTTTGCTTGATTCTCTCCTTCCAGGACCTGTGACTGTTGTATTAAAAAGAGGCGAGTCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTCCGTGTACCTGATGCTGACTTTATTCGGCTTATTTCCCGTAGATCAGAGACGGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTAATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTATATGATGGTGGTGTTCTTCCTGCTGGACGAGCAGGTTCTACAATTGTCGACCTCACCAAGCGAGGGATATTTAAGATCATCAGAGCTGGAAGTGCAAAGGAGCAGACTGTTGCAACGCTTGAAAGTGAGTTTGCCACCATTGTCGACCTTTGGCTACCGACCGCCACTGACCTCCGCCGACCGATCGCCACCGTTGACCTTCGACTACCGGTCGTCGCCGACCTTCGTCGACCAGCCGCCACCGTCGACCTCCAACTACCAGCCGCCTCCGACCTTCGTCGACCAGCCGCCACTGTCGACCTCCGACTACCAGCCGCCATCGTTGACCTCCGACTATCAGGAACTGCCGACCAGCTGCCACCGTCGACCTATGACTATTGGCTGTCATTGTCGACCTCCGACTACCGGTCGTCACCATTGACCTCTGCCTACCGGCCGCTGCCGACCTCTGTCGACCAGCCGCCACCGTTGACCTCCGACTCCGATCGTCGTCGACCTCTGTTGACGAGCCGCCATCGTCGACCCTCCGATTACCAGCCGCTGTCGACTTCCACCGACCAGTCACCACCGTCAATCTCCGACTACCGACCGCCACCGTTGACCTCCGACTACAGGTCACCGCCGACCTCCGTGGACCGACCGCCACCATGGACCTCTAACTACAGGTTGTCGCCGACTCCGCCGACTGACCGCTACCGTCGACCTCCGACTACTGGCCGCCACCGTCGACCTCCGAGTACTGGCCGCTGTGCCGCTGACTGA

Coding sequence (CDS)

ATGAACACGCTTCCGGCAAAAATGGTCGACAGCCTCTCTCTAATCAGAACGTTTGCAACTTTTCCCTCTTCTCATCTAGGTGCTCCCAATTGTGGGCTAGTTTCGTTCTTGCATCAAAATAGAGGATCAAGGGTGAGTTTTCCTAAAACGACATGGAGTTTCGAAAAATGTTGTATGCGCGTGGAGAACAGTTTGCAAGCACTTCGCCCTGCCTCCGAAGCTTTTGCTCAAGAGGCTACCGAAGCTCTTAGAGCTGGAAAGGTTATCGCTGTTCCCACTGATACTCTCTACGGACTCGCTTGTGATGCTTGGCAGTCTTTTGGGGGAAACGTGGTGGTAATGGAGAACAGTAGGGAGAGGTCATCTTCTTTAGTTCTGTTACTAGATACGGAGGAGGATGAGTGGAGAATCTTCAAGGAGAAACTGGGAGTACTTTTGTTGTGGTGTTTGAACCTTCCTTCACCCTTTCAGAAGATGGTTAAGGAATCTGTTGCTTTGCTAGGGGAAGGGTGTTCAGTGAAGGAGGGCGTGGTCGAGTTTTTGTGCAATTGGTTTAGTTCTGTGGAACGCGAGTTGGTTTATGGTTGTTCTTCTGAAGCAGTCAATAGGATTTACGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTCCTGGTTTGCTTGATTCTCTCCTTCCAGGACCTGTGACTGTTGTATTAAAAAGAGGCGAGTCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTCCGTGTACCTGATGCTGACTTTATTCGGCTTATTTCCCGTAGATCAGAGACGGCATTGGCTCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTCTGTGTTAATGATTTTGAAAACCTATGGCAACACTGTGCTTATGTATATGATGGTGGTGTTCTTCCTGCTGGACGAGCAGGTTCTACAATTGTCGACCTCACCAAGCGAGGGATATTTAAGATCATCAGAGCTGGAAGTGCAAAGGAGCAGACTGTTGCAACGCTTGAAAGTGAGTTTGCCACCATTGTCGACCTTTGGCTACCGACCGCCACTGACCTCCGCCGACCGATCGCCACCGTTGACCTTCGACTACCGGTCGTCGCCGACCTTCGTCGACCAGCCGCCACCGTCGACCTCCAACTACCAGCCGCCTCCGACCTTCGTCGACCAGCCGCCACTGTCGACCTCCGACTACCAGCCGCCATCGTTGACCTCCGACTATCAGGAACTGCCGACCAGCTGCCACCGTCGACCTATGACTATTGGCTGTCATTGTCGACCTCCGACTACCGGTCGTCACCATTGACCTCTGCCTACCGGCCGCTGCCGACCTCTGTCGACCAGCCGCCACCGTTGACCTCCGACTCCGATCGTCGTCGACCTCTGTTGACGAGCCGCCATCGTCGACCCTCCGATTACCAGCCGCTGTCGACTTCCACCGACCAGTCACCACCGTCAATCTCCGACTACCGACCGCCACCGTTGACCTCCGACTACAGGTCACCGCCGACCTCCGTGGACCGACCGCCACCATGGACCTCTAACTACAGGTTGTCGCCGACTCCGCCGACTGACCGCTACCGTCGACCTCCGACTACTGGCCGCCACCGTCGACCTCCGAGTACTGGCCGCTGTGCCGCTGACTGA

Protein sequence

MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMRVENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRERSSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEFLCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLLDSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVATLESEFATIVDLWLPTATDLRRPIATVDLRLPVVADLRRPAATVDLQLPAASDLRRPAATVDLRLPAAIVDLRLSGTADQLPPSTYDYWLSLSTSDYRSSPLTSAYRPLPTSVDQPPPLTSDSDRRRPLLTSRHRRPSDYQPLSTSTDQSPPSISDYRPPPLTSDYRSPPTSVDRPPPWTSNYRLSPTPPTDRYRRPPTTGRHRRPPSTGRCAAD

Homology

[Close]

BLAST of Spg027547 vs. NCBI nr
Match: XP_038893581.1 (yrdC domain-containing protein, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 465.7 bits (1197), Expect = 5.8e-127
Identity = 251/362 (69.34%), Postives = 261/362 (72.10%), Query Frame = 0


Query: 1   MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMR 60
           MN LPAKMV+SLSLIRTF TFPSSHLG+PN GLVSFL QNRGSRVSFPKTTWS EKCCMR
Sbjct: 1   MNILPAKMVESLSLIRTFVTFPSSHLGSPNYGLVSFLQQNRGSRVSFPKTTWSLEKCCMR 60

Query: 61  VENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRER 120
           VEN LQALRPASEAFAQEAT+AL+AGKVIAVPTDTLYGLACDA                 
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDA----------------- 120

Query: 121 SSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEF 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 LCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLL 240
                          CSSEAV+RIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLP GLL
Sbjct: 181 ---------------CSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLL 240

Query: 241 DSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 300
           DSLLPGPVTVVLKRGE+SILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS
Sbjct: 241 DSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 270

Query: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVAT 360
           GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DLT+RG +KI+RAGSAKEQTVA 
Sbjct: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTERGTYKILRAGSAKEQTVAI 270

Query: 361 LE 363
           LE
Sbjct: 361 LE 270

[Close]

BLAST of Spg027547 vs. NCBI nr
Match: XP_023521571.1 (yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023523156.1 yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 461.5 bits (1186), Expect = 1.1e-125
Identity = 251/362 (69.34%), Postives = 258/362 (71.27%), Query Frame = 0


Query: 1   MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMR 60
           MNTLPAKMV+ LSLIRTFATFPSS LGAPN G VSFLH NRGSR++FPKT WS EKC MR
Sbjct: 6   MNTLPAKMVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65

Query: 61  VENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRER 120
           VENSLQALRPASEAFAQEATEAL+AGKVIAVPTDTLYGLACDA                 
Sbjct: 66  VENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDA----------------- 125

Query: 121 SSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEF 180
                                                                       
Sbjct: 126 ------------------------------------------------------------ 185

Query: 181 LCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLL 240
                          CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLL
Sbjct: 186 ---------------CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVADHLPHGLL 245

Query: 241 DSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 300
           DSLLPGPVTVVLKRGESSILEKSLNPGL+SIGVRVPDADFIRLISRRS TALALTSANLS
Sbjct: 246 DSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGTALALTSANLS 275

Query: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVAT 360
           GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DLTKRG FKIIRAGSAKEQTVAT
Sbjct: 306 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVAT 275

Query: 361 LE 363
           L+
Sbjct: 366 LK 275

[Close]

BLAST of Spg027547 vs. NCBI nr
Match: XP_022998259.1 (yrdC domain-containing protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 460.7 bits (1184), Expect = 1.9e-125
Identity = 250/362 (69.06%), Postives = 258/362 (71.27%), Query Frame = 0


Query: 1   MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMR 60
           MNT PAKMV+ LSLIRTFATFPSS LGAPN G VSFLH NRGSR++FPKT WS EKC MR
Sbjct: 6   MNTFPAKMVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTAWSLEKCSMR 65

Query: 61  VENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRER 120
           VENSLQALRPASEAFAQEATEAL+AGKVIAVPTDTLYGLACDA                 
Sbjct: 66  VENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDA----------------- 125

Query: 121 SSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEF 180
                                                                       
Sbjct: 126 ------------------------------------------------------------ 185

Query: 181 LCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLL 240
                          CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLL
Sbjct: 186 ---------------CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVADHLPHGLL 245

Query: 241 DSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 300
           DSLLPGPVTVVLKRGESSILEKSLNPGL+SIGVRVPDADFIRLISRRS TALALTSANLS
Sbjct: 246 DSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGTALALTSANLS 275

Query: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVAT 360
           G+PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DLTKRG+FKIIRAGSAKEQTVAT
Sbjct: 306 GRPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGMFKIIRAGSAKEQTVAT 275

Query: 361 LE 363
           LE
Sbjct: 366 LE 275

[Close]

BLAST of Spg027547 vs. NCBI nr
Match: XP_022948702.1 (yrdC domain-containing protein, mitochondrial [Cucurbita moschata])

HSP 1 Score: 455.7 bits (1171), Expect = 6.0e-124
Identity = 247/362 (68.23%), Postives = 257/362 (70.99%), Query Frame = 0


Query: 1   MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMR 60
           MNTLPAKMV+ LS+IRTFATFPSS LGAP+ G VSFLH NRGSR++FPKT WS EKC MR
Sbjct: 6   MNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65

Query: 61  VENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRER 120
           VENSLQALRPASEAFAQEA EAL+AGKVIAVPTDTLYGLACDA                 
Sbjct: 66  VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDA----------------- 125

Query: 121 SSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEF 180
                                                                       
Sbjct: 126 ------------------------------------------------------------ 185

Query: 181 LCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLL 240
                          CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLL
Sbjct: 186 ---------------CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVADHLPHGLL 245

Query: 241 DSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 300
           DSLLPGPVTVVLKRGESSILEKSLNPGL+SIGVRVPDADFIRLISRRS TALALTSANLS
Sbjct: 246 DSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGTALALTSANLS 275

Query: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVAT 360
           GQPSSVCV+DFENLWQHCAYVYDGG+LPAGRAGSTI+DLTKRG FKIIRAGSAKEQTVAT
Sbjct: 306 GQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVAT 275

Query: 361 LE 363
           LE
Sbjct: 366 LE 275

[Close]

BLAST of Spg027547 vs. NCBI nr
Match: KAG6607198.1 (YrdC domain-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 453.8 bits (1166), Expect = 2.3e-123
Identity = 248/362 (68.51%), Postives = 256/362 (70.72%), Query Frame = 0


Query: 1   MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMR 60
           MNTLPAKMV+ LS+IRTFATFPSS LGAP+ G VSFLH NRGSR++FPKT WS EKC MR
Sbjct: 6   MNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65

Query: 61  VENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRER 120
           VENSLQALRPASEAFAQEA EAL+AGKVIAVPTDTLYGLACDA                 
Sbjct: 66  VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDA----------------- 125

Query: 121 SSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEF 180
                                                                       
Sbjct: 126 ------------------------------------------------------------ 185

Query: 181 LCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLL 240
                          CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLL
Sbjct: 186 ---------------CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVADHLPHGLL 245

Query: 241 DSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 300
           DSLLPGPVTVVLKRGESSILEKSLNPGL+SIGVRVPDADFIRLISRRS TALALTSANLS
Sbjct: 246 DSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGTALALTSANLS 275

Query: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVAT 360
           GQPSSV VNDFENLWQHCAYVYDGGVLPAGRAGSTI+DLTKRG FKIIRAGSAKEQTVAT
Sbjct: 306 GQPSSVYVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVAT 275

Query: 361 LE 363
           LE
Sbjct: 366 LE 275

[Close]

BLAST of Spg027547 vs. ExPASy Swiss-Prot
Match: Q0VC80 (YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.4e-35
Identity = 86/201 (42.79%), Postives = 122/201 (60.70%), Query Frame = 0


Query: 172 SVKEGVVEFLCNWFSSVERELVYG--CS---SEAVNRIYEIKGRKLTSPLAICVGDVSDI 231
           +++  V E       +V  + +YG  CS   SEA+  +Y +KGR  T PLA+C+G V+D+
Sbjct: 67  ALRAAVAELRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADV 126

Query: 232 TRFAVTDHLPPGLLDSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISR 291
            R+     +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++
Sbjct: 127 YRYCHV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQ 186

Query: 292 RSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIVDLTK 351
                LALTSANLS Q SS+ V +F++LW H + + DGG +     P  R GST+VDL+ 
Sbjct: 187 MFGGPLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSV 246

Query: 352 RGIFKIIRAGSAKEQTVATLE 363
            G F IIR G A E T A L+
Sbjct: 247 PGKFGIIRPGCALESTSAILQ 264

[Close]

BLAST of Spg027547 vs. ExPASy Swiss-Prot
Match: Q86U90 (YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 3.5e-34
Identity = 83/207 (40.10%), Postives = 122/207 (58.94%), Query Frame = 0


Query: 172 SVKEGVVEFLCNWFSSVERELVYGCS-----SEAVNRIYEIKGRKLTSPLAICVGDVSDI 231
           +++  V E       +V  + +YG +     S A+  +Y +KGR    PLA+C+G V+D+
Sbjct: 69  ALRAAVAELRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADV 128

Query: 232 TRFAVTDHLPPGLLDSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISR 291
            R+     +P GLL  LLPGPVT+V++R E   L K LNP    +G+R+PD  F++ +++
Sbjct: 129 YRYCRV-RVPEGLLKDLLPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMQDLAQ 188

Query: 292 RSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIVDLTK 351
             E  LALTSANLS Q SS+ V +F++LW   + V DGG +     P  R GST+VDL+ 
Sbjct: 189 MFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSV 248

Query: 352 RGIFKIIRAGSAKEQTVATLESEFATI 369
            G F IIR G A E T A L+ ++  +
Sbjct: 249 PGKFGIIRPGCALESTTAILQQKYGLL 272

[Close]

BLAST of Spg027547 vs. ExPASy Swiss-Prot
Match: Q499R4 (YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Yrdc PE=2 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-33
Identity = 83/207 (40.10%), Postives = 123/207 (59.42%), Query Frame = 0


Query: 172 SVKEGVVEFLCNWFSSVERELVYG--CS---SEAVNRIYEIKGRKLTSPLAICVGDVSDI 231
           +++  V E       +V  + +YG  CS   S A++ +Y +KGR    PLA+C+G V+D+
Sbjct: 70  ALRAAVAELRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADV 129

Query: 232 TRFAVTDHLPPGLLDSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISR 291
            R+     +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++
Sbjct: 130 YRYCQV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTPLVGIRIPDHAFMLDLAQ 189

Query: 292 RSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIVDLTK 351
                LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST+VDL+ 
Sbjct: 190 MFGGPLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSV 249

Query: 352 RGIFKIIRAGSAKEQTVATLESEFATI 369
            G F IIR+G A E T A L+ ++  +
Sbjct: 250 PGKFGIIRSGCALENTTAILQGKYGLL 273

[Close]

BLAST of Spg027547 vs. ExPASy Swiss-Prot
Match: Q3U5F4 (YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 6.6e-33
Identity = 81/207 (39.13%), Postives = 121/207 (58.45%), Query Frame = 0


Query: 172 SVKEGVVEFLCNWFSSVERELVYG-----CSSEAVNRIYEIKGRKLTSPLAICVGDVSDI 231
           +++  V E       +V  + +YG      SS A++ +Y +KGR    PLA+C+G V+D+
Sbjct: 70  ALRAAVAELRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADV 129

Query: 232 TRFAVTDHLPPGLLDSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISR 291
            R+     +P  LL+ L PGPVT+V++R E   L K LNP    +G+R+PD  F+  +++
Sbjct: 130 YRYCQV-RVPRELLEDLFPGPVTLVMERSEE--LNKDLNPFTRLVGIRIPDHAFMLDLAQ 189

Query: 292 RSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVL-----PAGRAGSTIVDLTK 351
                LALTSANLS Q SS+ V +F++LW H + V DGG +     P  R GST+VDL+ 
Sbjct: 190 MFGGPLALTSANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSV 249

Query: 352 RGIFKIIRAGSAKEQTVATLESEFATI 369
            G F IIR G A E T + L+ ++  +
Sbjct: 250 PGKFGIIRPGCALENTTSILQQKYGLL 273

[Close]

BLAST of Spg027547 vs. ExPASy Swiss-Prot
Match: Q60369 (Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0062 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 9.6e-16
Identity = 56/165 (33.94%), Postives = 89/165 (53.94%), Query Frame = 0


Query: 191 ELVYGCSSEAVN-----RIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLLDSLLP 250
           + +YG S+ A+N     ++Y IK R+   PL+ICV D ++I ++A  + L   ++D  LP
Sbjct: 40  DTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEIEKYAYVNDLAKKIIDKFLP 99

Query: 251 GPVTVVLKR--GESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQP 310
           GP+T++LK+  G   I+ K      D IG+R+PD   IR +   S   L  TSAN+SG+ 
Sbjct: 100 GPLTIILKKKPGIPDIVAK------DYIGIRIPDEPIIREL---SIVPLTTTSANISGKE 159

Query: 311 SSVCVNDFE-NLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKI 348
           S   V++ +  + +   YV D G     +  STI+ +    I  I
Sbjct: 160 SPTTVDEIDKEVLKKVDYVIDIGKCKYSKP-STIIKIEDDKIISI 194

[Close]

BLAST of Spg027547 vs. ExPASy TrEMBL
Match: A0A6J1KDV4 (yrdC domain-containing protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492950 PE=3 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 9.0e-126
Identity = 250/362 (69.06%), Postives = 258/362 (71.27%), Query Frame = 0


Query: 1   MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMR 60
           MNT PAKMV+ LSLIRTFATFPSS LGAPN G VSFLH NRGSR++FPKT WS EKC MR
Sbjct: 6   MNTFPAKMVEGLSLIRTFATFPSSQLGAPNYGFVSFLHHNRGSRLNFPKTAWSLEKCSMR 65

Query: 61  VENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRER 120
           VENSLQALRPASEAFAQEATEAL+AGKVIAVPTDTLYGLACDA                 
Sbjct: 66  VENSLQALRPASEAFAQEATEALKAGKVIAVPTDTLYGLACDA----------------- 125

Query: 121 SSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEF 180
                                                                       
Sbjct: 126 ------------------------------------------------------------ 185

Query: 181 LCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLL 240
                          CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLL
Sbjct: 186 ---------------CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVADHLPHGLL 245

Query: 241 DSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 300
           DSLLPGPVTVVLKRGESSILEKSLNPGL+SIGVRVPDADFIRLISRRS TALALTSANLS
Sbjct: 246 DSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGTALALTSANLS 275

Query: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVAT 360
           G+PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DLTKRG+FKIIRAGSAKEQTVAT
Sbjct: 306 GRPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGMFKIIRAGSAKEQTVAT 275

Query: 361 LE 363
           LE
Sbjct: 366 LE 275

[Close]

BLAST of Spg027547 vs. ExPASy TrEMBL
Match: A0A6J1G9Z7 (yrdC domain-containing protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111452294 PE=3 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 2.9e-124
Identity = 247/362 (68.23%), Postives = 257/362 (70.99%), Query Frame = 0


Query: 1   MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMR 60
           MNTLPAKMV+ LS+IRTFATFPSS LGAP+ G VSFLH NRGSR++FPKT WS EKC MR
Sbjct: 6   MNTLPAKMVEGLSIIRTFATFPSSQLGAPSYGFVSFLHHNRGSRLNFPKTVWSLEKCSMR 65

Query: 61  VENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRER 120
           VENSLQALRPASEAFAQEA EAL+AGKVIAVPTDTLYGLACDA                 
Sbjct: 66  VENSLQALRPASEAFAQEAIEALKAGKVIAVPTDTLYGLACDA----------------- 125

Query: 121 SSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEF 180
                                                                       
Sbjct: 126 ------------------------------------------------------------ 185

Query: 181 LCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLL 240
                          CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAV DHLP GLL
Sbjct: 186 ---------------CSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVADHLPHGLL 245

Query: 241 DSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 300
           DSLLPGPVTVVLKRGESSILEKSLNPGL+SIGVRVPDADFIRLISRRS TALALTSANLS
Sbjct: 246 DSLLPGPVTVVLKRGESSILEKSLNPGLESIGVRVPDADFIRLISRRSGTALALTSANLS 275

Query: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVAT 360
           GQPSSVCV+DFENLWQHCAYVYDGG+LPAGRAGSTI+DLTKRG FKIIRAGSAKEQTVAT
Sbjct: 306 GQPSSVCVHDFENLWQHCAYVYDGGILPAGRAGSTIIDLTKRGTFKIIRAGSAKEQTVAT 275

Query: 361 LE 363
           LE
Sbjct: 366 LE 275

[Close]

BLAST of Spg027547 vs. ExPASy TrEMBL
Match: A0A0A0LUP4 (YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 1.9e-123
Identity = 244/362 (67.40%), Postives = 258/362 (71.27%), Query Frame = 0


Query: 1   MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMR 60
           MNTLPAKM DSLSLIRTF TFPSS LG+ N G+VSFL +NRGSRVSF KT WS EKCCMR
Sbjct: 1   MNTLPAKMADSLSLIRTFTTFPSSQLGSSNYGIVSFLQRNRGSRVSFLKTNWSLEKCCMR 60

Query: 61  VENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRER 120
           VEN LQALRPASEAFAQEAT+AL+AGKVIAVPTDTLYGLACDA                 
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDA----------------- 120

Query: 121 SSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEF 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 LCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLL 240
                          CS+EAV+RIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLP GLL
Sbjct: 181 ---------------CSAEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLL 240

Query: 241 DSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 300
           DSLLPGPVTVVLKRGESS+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS
Sbjct: 241 DSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 270

Query: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVAT 360
           GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTI+DLT++G FKIIRAGSA+EQT+AT
Sbjct: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTEQGTFKIIRAGSAEEQTIAT 270

Query: 361 LE 363
           LE
Sbjct: 361 LE 270

[Close]

BLAST of Spg027547 vs. ExPASy TrEMBL
Match: A0A5D3DCB7 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00330 PE=3 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122
Identity = 247/355 (69.58%), Postives = 268/355 (75.49%), Query Frame = 0


Query: 8   MVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMRVENSLQA 67
           M DSLSLIRTFATFPSSHLG+ N G+VSFL +NRGSRVSF KT WS EKCCM VEN LQA
Sbjct: 1   MADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMPVENCLQA 60

Query: 68  LRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRERSSSLVLL 127
           LRPASEAFAQEAT+AL+AGKVIAVPTDTLYGLACDA      N V+ E S          
Sbjct: 61  LRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACT----NKVLGERS---------- 120

Query: 128 LDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEFLCNWFSS 187
                  W       GV               V  S+  LG     +         W+  
Sbjct: 121 -------WS------GV--------------HVSRSLPWLGSHLGGR---------WWVV 180

Query: 188 VERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLLDSLLPGP 247
           +      G S+EAV+RIYEIKGRKLTSPLAICVG VSDITR+A+TDHLP GLLDSLLPGP
Sbjct: 181 MRNST--GSSAEAVHRIYEIKGRKLTSPLAICVGGVSDITRYAITDHLPSGLLDSLLPGP 240

Query: 248 VTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVC 307
           VTVVLKRGESS+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVC
Sbjct: 241 VTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVC 300

Query: 308 VNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVATLE 363
           VNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLT+RG FKIIRAGSA++QT+ATL+
Sbjct: 301 VNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTERGTFKIIRAGSAEKQTIATLQ 303

[Close]

BLAST of Spg027547 vs. ExPASy TrEMBL
Match: A0A5A7T5W1 (YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00620 PE=3 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 2.1e-122
Identity = 242/362 (66.85%), Postives = 258/362 (71.27%), Query Frame = 0


Query: 1   MNTLPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSFPKTTWSFEKCCMR 60
           MNTLPAKM DSLSLIRTFATFPSSHLG+ N G+VSFL +NRGSRVSF KT WS EKCCM 
Sbjct: 1   MNTLPAKMADSLSLIRTFATFPSSHLGSSNYGIVSFLQRNRGSRVSFLKTDWSLEKCCMP 60

Query: 61  VENSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRER 120
           VEN LQALRPASEAFAQEAT+AL+AGKVIAVPTDTLYGLACDA                 
Sbjct: 61  VENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDA----------------- 120

Query: 121 SSSLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEF 180
                                                                       
Sbjct: 121 ------------------------------------------------------------ 180

Query: 181 LCNWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLL 240
                          CS+EAV+RIYEIKGRKLTSPLAICVG VSDITR+A+TDHLP GLL
Sbjct: 181 ---------------CSAEAVHRIYEIKGRKLTSPLAICVGGVSDITRYAITDHLPSGLL 240

Query: 241 DSLLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 300
           DSLLPGPVTVVLKRGESS+L+KSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS
Sbjct: 241 DSLLPGPVTVVLKRGESSVLDKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLS 270

Query: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVAT 360
           GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLT+RG FKIIRAGSA++QT+AT
Sbjct: 301 GQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTERGTFKIIRAGSAEKQTIAT 270

Query: 361 LE 363
           L+
Sbjct: 361 LQ 270

[Close]

BLAST of Spg027547 vs. TAIR 10
Match: AT5G60590.2 (DHBP synthase RibB-like alpha/beta domain )

HSP 1 Score: 291.2 bits (744), Expect = 1.8e-78
Identity = 174/360 (48.33%), Postives = 200/360 (55.56%), Query Frame = 0


Query: 4   LPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSF-PKTTWSFEKCCMRVE 63
           L  ++ + L  I    + P    G       S  +Q+R  R     K  WS E+    V 
Sbjct: 3   LSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVV 62

Query: 64  NSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRERSS 123
           +    + PA+EA+AQEA EA+++ KVIAVPTDTLYG ACDA                   
Sbjct: 63  SKSCLVHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDA------------------- 122

Query: 124 SLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEFLC 183
                                                                       
Sbjct: 123 ------------------------------------------------------------ 182

Query: 184 NWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLLDS 243
                        CS EAV+RIYEIKGRKLTSPLAICVGDV DI R A T HLP GLLDS
Sbjct: 183 -------------CSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKRVATTSHLPHGLLDS 242

Query: 244 LLPGPVTVVLKRGESSILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQ 303
           LLPGPVT+VL+RGESSILEKSLNPG+ +IGVRVPD +FIR +SR S + LALTSANLSG 
Sbjct: 243 LLPGPVTLVLQRGESSILEKSLNPGIGTIGVRVPDCEFIREVSRGSGSVLALTSANLSGD 270

Query: 304 PSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIVDLTKRGIFKIIRAGSAKEQTVATLE 363
            SSVCV DFENLWQHCAYVYDGG+LP+GRAGSTIVDLTK G +KIIR GSAK+ TVA LE
Sbjct: 303 RSSVCVKDFENLWQHCAYVYDGGLLPSGRAGSTIVDLTKVGKYKIIRPGSAKQATVAILE 270

[Close]

BLAST of Spg027547 vs. TAIR 10
Match: AT5G60590.1 (DHBP synthase RibB-like alpha/beta domain )

HSP 1 Score: 122.9 bits (307), Expect = 8.6e-28
Identity = 89/252 (35.32%), Postives = 106/252 (42.06%), Query Frame = 0


Query: 4   LPAKMVDSLSLIRTFATFPSSHLGAPNCGLVSFLHQNRGSRVSF-PKTTWSFEKCCMRVE 63
           L  ++ + L  I    + P    G       S  +Q+R  R     K  WS E+    V 
Sbjct: 3   LSTRLAEKLPGILPAPSSPLLRKGVSELRCFSIANQSRRLRWGLQKKMVWSLERAETCVV 62

Query: 64  NSLQALRPASEAFAQEATEALRAGKVIAVPTDTLYGLACDAWQSFGGNVVVMENSRERSS 123
           +    + PA+EA+AQEA EA+++ KVIAVPTDTLYG ACDA                   
Sbjct: 63  SKSCLVHPATEAYAQEAIEAIKSEKVIAVPTDTLYGFACDA------------------- 122

Query: 124 SLVLLLDTEEDEWRIFKEKLGVLLLWCLNLPSPFQKMVKESVALLGEGCSVKEGVVEFLC 183
                                                                       
Sbjct: 123 ------------------------------------------------------------ 162

Query: 184 NWFSSVERELVYGCSSEAVNRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPPGLLDS 243
                        CS EAV+RIYEIKGRKLTSPLAICVGDV DI R A T HLP GLLDS
Sbjct: 183 -------------CSLEAVSRIYEIKGRKLTSPLAICVGDVLDIKRVATTSHLPHGLLDS 162

Query: 244 LLPGPVTVVLKR 255
           LLPGPVT+VL+R
Sbjct: 243 LLPGPVTLVLQR 162

The following BLAST results are available for this feature:

BLAST of Spg027547 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893581.1	5.8e-127	69.34	yrdC domain-containing protein, mitochondrial isoform X1 [Benincasa hispida]	[more]
XP_023521571.1	1.1e-125	69.34	yrdC domain-containing protein, mitochondrial-like [Cucurbita pepo subsp. pepo] ...	[more]
XP_022998259.1	1.9e-125	69.06	yrdC domain-containing protein, mitochondrial [Cucurbita maxima]	[more]
XP_022948702.1	6.0e-124	68.23	yrdC domain-containing protein, mitochondrial [Cucurbita moschata]	[more]
KAG6607198.1	2.3e-123	68.51	YrdC domain-containing protein, mitochondrial, partial [Cucurbita argyrosperma s...	[more]

BLAST of Spg027547 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0VC80	5.4e-35	42.79	YrdC domain-containing protein, mitochondrial OS=Bos taurus OX=9913 GN=YRDC PE=2...	[more]
Q86U90	3.5e-34	40.10	YrdC domain-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=YRDC PE...	[more]
Q499R4	1.7e-33	40.10	YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Y...	[more]
Q3U5F4	6.6e-33	39.13	YrdC domain-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Yrdc P...	[more]
Q60369	9.6e-16	33.94	Putative threonylcarbamoyl-AMP synthase OS=Methanocaldococcus jannaschii (strain...	[more]

BLAST of Spg027547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KDV4	9.0e-126	69.06	yrdC domain-containing protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1G9Z7	2.9e-124	68.23	yrdC domain-containing protein, mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0LUP4	1.9e-123	67.40	YrdC-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G077210 P...	[more]
A0A5D3DCB7	2.1e-122	69.58	YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7T5W1	2.1e-122	66.85	YrdC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Spg027547 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60590.2	1.8e-78	48.33	DHBP synthase RibB-like alpha/beta domain	[more]
AT5G60590.1	8.6e-28	35.32	DHBP synthase RibB-like alpha/beta domain	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 571..574
None	No IPR available	GENE3D	3.90.870.10	DHBP synthase	coord: 190..363 e-value: 6.7E-40 score: 138.2 coord: 65..140 e-value: 4.9E-9 score: 37.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 513..535
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 496..512
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 462..574
None	No IPR available	PANTHER	PTHR17490	SUA5	coord: 30..127 coord: 196..363
None	No IPR available	PANTHER	PTHR17490:SF10	YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL	coord: 30..127 coord: 196..363
IPR006070	YrdC-like domain	PFAM	PF01300	Sua5_yciO_yrdC	coord: 81..139 e-value: 5.1E-7 score: 29.3 coord: 198..351 e-value: 4.5E-32 score: 110.9
IPR006070	YrdC-like domain	PROSITE	PS51163	YRDC	coord: 170..353 score: 19.243366
IPR017945	DHBP synthase RibB-like alpha/beta domain superfamily	SUPERFAMILY	55821	YrdC/RibB	coord: 75..156
IPR017945	DHBP synthase RibB-like alpha/beta domain superfamily	SUPERFAMILY	55821	YrdC/RibB	coord: 196..358

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg027547.1	Spg027547.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006450	regulation of translational fidelity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003725	double-stranded RNA binding
molecular_function	GO:0000049	tRNA binding