Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGCTCCAAGGAAACCCAACATGAAGACAGCCAAACTCCTGTCATTGCAAACAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTAATGCTTGGCAAATTCATCTCTTCTTCTCAGCAACCAAACGACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGAAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAGTCAGACCCCTACCATCAAAGACAAGGGAAAGATCATTGCACAAGATCAGTCACAACATTCCGCTTCTATTGCTTCACTGCCCGTTCAGCAGCTTCAGGATATGATCATGAATTCCATCAGAGCTCAATATGGTGGACCGACTCAAAACTCTCTCTTGTATTCCAAGCCGTATACCAAGAGAATCGACAATCTGAGAATGCCTCATGGATACCAGCCACCAAAGTTTCAACAATTCGACGGGAAGGGCAATCCCAAGCAGCACGTTGCTCATTTCGTCGAGACATGTGAAAACGCTGGTACTAGAGGAGACCAACTAGTCAGGCAGTTCGTACGAACACTGAAGGGGAATGCTTTCGATTGGTATACCGACCTTGAGCCTGAGACTATCGATAGTTGGGAACAACTTGAGAAGGAGTTCCTCAACCGCTTCTACAGCACAAGACGAACCGTTAGTATGACGGAGCTCACTAGCACTAAACAACGGAAAGGTGAACCGGTTCTTGACTACATCAACCGTTGGAGAGCTTTGAGCTTAGATTGCAAGGACAAACTCACCGAATTGTCTGCTGTTGAAATGTGCACCCAAGGCATGCATTGGGGACTCCTTTATATCTTGCAAGGAATAAAACCCCGCACTTTCGAGGAGTTGGCAACCCGCGCTCATGACATGGAATTGAGCATTGCTACTAGAGGGAACAAAGATTCTATTGTCCCCGATGGCAGGAAAGAAAAGAAAGAAGTTAAAAATACTGAGAAAGCTACCAAAAGCACTACGAAAGAGTCAATGGTAGTCAATGCAGCTCCTTTCAAGTTTTCGTCAAAAGGAAAAGAAAAGAAGATAGAGAAACAACAAGAGGGAGGTGAGAGACGTCGTCTGACCTTGAAAGAAAGGCAAGAGAAAGTTTACCCTTGTCCAGATTCTGACATTTCAGATATGTTAGAACAACTCCTGGAGAAACAACTTATTGAGCTACCAGAATGCAAGCGACCAGAAGAGATGGGGAGAGTTAATGAGCCCAACTACTGCAAATATCACCGAGTCATCAGCCACCCGGTGGAAAAGTTCTTCGTCCTGAAGGAGCTAATCTTGAAATTAGCTAAAGAAAAGAAGATTGAGTTAGATCTTGATGAGGTAGCTCAATCAAATCATGCGACGATAGCAACGAATCTGAACAACCGAGTAGCTCCAAGCTCGGTTCATGATTCAGTAGCAAGTTTGATCCAGTTCGGGACATTAGAACCGATTGTTATTTGGCTTCAGCAAAAATCTGCAAGAGACATCTGCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTACGTTCAAAGAGAGCCTCACATGTTCCGAAACTACAGGAGAAAGAACATGTCACAAAAACAGAAAAGAAAGATAAAAGGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCATGATTTTGTTATGTCTCGACAACCAGTGACCCTTAAAGATTTCTTCCCGAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCGCATGTCATGCTGTCAATACGTGCGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGGTGATGACGAGGCCAGAAGATTCACCTTCATTCACAATAGATGATTTGGTGTCACTCCCTCAAGCAACCAAAGATGCTATTGTTGAAACATTGAAAAATTCTAACGTTTCAGACGTTCCAGACTTGCAAGAACACAAATGTGCCTCATGTTATATGTCCATTAGCTTCACAGATGAAGACTTGATGTTGGGATCGAAGCCTCATAATAGGCCATTGTTCGTCTCAGGATATATTCAAGAGCAAAAAGTTGGTCGAATTCTCATCGACGATGGATCTGCGGTGAATATAATGCCTAAGTCAACCATGACACAGATAGGAATTTCAATAAATGAACTATCAAATAGTAGGTTGGTTATTCAAGGCTTCAACCAAGGTGGCCAACGAGCAATCGGTATGATCCGTTTGGAGCTTGTTATTGGAGATTTGAAGGCCAACACTTTATTCCATATCATAGATTCCAAGACCACTTACAAGTTATTGTTAGGTCGTCCTTGGATTCATGGAAATGGAGTAATATCTTCTACACTTCATCAGTGTTTCAAGTTCTATCAAGACGGTGTCAAGAAAGTTGAAGCCGACACTAATCCATTCTCAGAGGCAGAATCTCACTTTGCAGATGCAAAGTTTTATATGCAGAATGATAAAGCAGGAGAGATCATCCCAGGTGAGATTCCTCTGATTGAAAGTCAGAAAGTAGAGCATCCAAAGAATGCGAAGAAGGAGTCGATCGAAGAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAGCATACGCTCACCCTGCAAAATCGAAAGCTCCAAAGGAAGAGGCATCGTCGAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGACGCAAGAAAGGGGAATCACCATTCACAGAATGTTTAGAAATTTTGAAGGTTGGTGATGTGGAGATTCTAAAAGAAAATTTCACCACACCTTTGACAGCAATTACCAAGCAAGAGATTCAGGAATCAAAGACTGATCGTACCAAAGTAACTTTGCCGGAAAGACGAACGAAGGATGGATTTGACCCAAATGCATACAAACTCCTAAAAAAGGCAGGATACGACTTTACAACTCATACTGAGTTTAAAAGTCTAAAAATCTTTGATGGGAGATCTGAGCTTTCTCCGACACAGAAGAAGCTCCAAAAAGAAGGTTATGTCATACCATCCTCGAGAGCCGGACTAGGGTACAATCCCCCAAAGCCAGTTCGTATAACAAGAAAATGGAAAGTTGCAGATGCACATCACATAACGATAGAAGAGATGAGCGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATTTCTGTCTTCGATCGCATTAAAGCGTCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGGAAAAGGAAGGTCAGAGAAAAACTTCTGCTCCTGTCCGACGTTCAGTGTTTCATCGTTTGAGTGTGTCTACATCAAAGAAAGTAGATGAACCTTCGAGATCCGTGTTCGACCGCCTTCAAGCAACATATGGCCAATGCAAGGGAAAGTTGAAAAGTTTTGAAACAGAAGAATCCGACGAGATGAATGACAACAACGAATTTTCCAGTACTGTTCCTTCACGGATGAAGAGAAAACCT
mRNA sequence
ATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTAATGCTTGGCAAATTCATCTCTTCTTCTCAGCAACCAAACGACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGAAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAAACCGATTGTTATTTGGCTTCAGCAAAAATCTGCAAGAGACATCTGCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTACGTTCAAAGAGAGCCTCACATGTTCCGAAACTACAGGAGAAAGAACATGTCACAAAAACAGAAAAGAAAGATAAAAGGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCATGATTTTGTTATGTCTCGACAACCAGTGACCCTTAAAGATTTCTTCCCGAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCGCATGTCATGCTGTCAATACGTGCGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGAATGCGAAGAAGGAGTCGATCGAAGAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAGCATACGCTCACCCTGCAAAATCGAAAGCTCCAAAGGAAGAGGCATCGTCGAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGACGCAAGAAAGGGGAATCACCATTCACAGAATGTTTAGAAATTTTGAAGAAGAAGCTCCAAAAAGAAGGTTATGTCATACCATCCTCGAGAGCCGGACTAGGGTACAATCCCCCAAAGCCAGTTCGTATAACAAGAAAATGGAAAGTTGCAGATGCACATCACATAACGATAGAAGAGATGAGCGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATTTCTGTCTTCGATCGCATTAAAGCGTCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGGAAAAGGAAGGTCAGAGAAAAACTTCTGCTCCTGTCCGACGTTCAGTGTTTCATCGTTTGAGTGTGTCTACATCAAAGAAAGTAGATGAACCTTCGAGATCCGTGTTCGACCGCCTTCAAGCAACATATGGCCAATGCAAGGGAAAGTTGAAAAGTTTTGAAACAGAAGAATCCGACGAGATGAATGACAACAACGAATTTTCCAGTACTGTTCCTTCACGGATGAAGAGAAAACCT
Coding sequence (CDS)
ATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCGCTGCAGAAAATCTAATGCTTGGCAAATTCATCTCTTCTTCTCAGCAACCAAACGACACATCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGAAACTAGTGAAGAACGAATGGCTGAGGTTGAGAAGAAAATCAGCATGCTACTGAAGATGGTCGAAGAGAAAGACCAAGAAATCGCCTCTCTCAGGAACCAGATGGAAAGTCGGGATGTTGCTGAATCGAAACCGATTGTTATTTGGCTTCAGCAAAAATCTGCAAGAGACATCTGCCAAGACCAACTTGAGTCTGTTGAAAATGAAGACGAAGGATGGACTTTGGTAACTCGTCGAAAGAAGCAAAAGAAACATTACGTTCAAAGAGAGCCTCACATGTTCCGAAACTACAGGAGAAAGAACATGTCACAAAAACAGAAAAGAAAGATAAAAGGTTTGAGAAAGCCTAAACTAGTTGTCGAAGAGAATCATGATTTTGTTATGTCTCGACAACCAGTGACCCTTAAAGATTTCTTCCCGAAGAACTTTCTTAATGACGATCATGAGGACATCCCTGAGATAGTCGCATGTCATGCTGTCAATACGTGCGAAGAAGGCGATTCTTCCTCAAGTCCATCTCAGAATGCGAAGAAGGAGTCGATCGAAGAAGTAGATGCTTGTGAAGTTCAATCAAAGGAAGCATACGCTCACCCTGCAAAATCGAAAGCTCCAAAGGAAGAGGCATCGTCGAACGTCCCTATATTGCGCTACGTTCCTTTATCTCGACGCAAGAAAGGGGAATCACCATTCACAGAATGTTTAGAAATTTTGAAGAAGAAGCTCCAAAAAGAAGGTTATGTCATACCATCCTCGAGAGCCGGACTAGGGTACAATCCCCCAAAGCCAGTTCGTATAACAAGAAAATGGAAAGTTGCAGATGCACATCACATAACGATAGAAGAGATGAGCGATCCAGAAGATAAAAAGAACGATGATAGCCAGAAAATTTCTGTCTTCGATCGCATTAAAGCGTCGACTACTCGTCTTTCAGTTCATCAGCGGCTGAAATATTCATCTTCGGAAAAGGAAGGTCAGAGAAAAACTTCTGCTCCTGTCCGACGTTCAGTGTTTCATCGTTTGAGTGTGTCTACATCAAAGAAAGTAGATGAACCTTCGAGATCCGTGTTCGACCGCCTTCAAGCAACATATGGCCAATGCAAGGGAAAGTTGAAAAGTTTTGAAACAGAAGAATCCGACGAGATGAATGACAACAACGAATTTTCCAGTACTGTTCCTTCACGGATGAAGAGAAAACCT
Protein sequence
MLRRMTESAQLEIAAAENLMLGKFISSSQQPNDTSSPDVMSVMMTDAETSEERMAEVEKKISMLLKMVEEKDQEIASLRNQMESRDVAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENHDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNTCEEGDSSSSPSQNAKKESIEEVDACEVQSKEAYAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTECLEILKKKLQKEGYVIPSSRAGLGYNPPKPVRITRKWKVADAHHITIEEMSDPEDKKNDDSQKISVFDRIKASTTRLSVHQRLKYSSSEKEGQRKTSAPVRRSVFHRLSVSTSKKVDEPSRSVFDRLQATYGQCKGKLKSFETEESDEMNDNNEFSSTVPSRMKRKP
Homology
BLAST of Spg027085 vs. NCBI nr
Match:
KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 142.9 bits (359), Expect = 6.7e-30
Identity = 140/494 (28.34%), Postives = 200/494 (40.49%), Query Frame = 0
Query: 87 VAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRR 146
+A K I + L+++ + Q++ +E +DEGWT+VTRRKK+K +Q+E ++ NYRR
Sbjct: 448 LAREKKIKLDLEEEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRR 507
Query: 147 KNMSQKQKRKIKGLRKPKLVVEENHDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVA--- 206
N +QK K+K K RK KLV E++ DF +++ VTL DFFP FL D ++ P +VA
Sbjct: 508 GNKTQKNKKK-KKTRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASAS 567
Query: 207 --------------CHAVNTCEEG----------------------------DSSSS--- 266
C +++ +E D+ S+
Sbjct: 568 SSSAPIATYESTPYCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNI 627
Query: 267 -----------------------------------------------------PSQN--- 326
P N
Sbjct: 628 MPKSTMRQLGILMEELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKED 687
Query: 327 -------AKKESIEEVDACEVQSKEAYAHPAKSKAPKEEASSNVPILRYVPLSRRKKGES 386
A +ES + EA AKS +E +SN PILRYVPLSRRKKGES
Sbjct: 688 NLQLKSLASRESHKSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGES 747
Query: 387 PFTEC--------LEILK------------------------------------------ 391
PF E +E+LK
Sbjct: 748 PFVEFPQGLKVGDIEVLKESFTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMA 807
BLAST of Spg027085 vs. NCBI nr
Match:
TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 132.1 bits (331), Expect = 1.2e-26
Identity = 163/671 (24.29%), Postives = 235/671 (35.02%), Query Frame = 0
Query: 63 MLLKMVEEKDQEIASLRNQMESRDVAESKPIVIWLQQKSARDICQDQLESVENEDEGWTL 122
++L++ EK + +++ + +P+V+ Q+ A + Q++ +E +DE WT+
Sbjct: 327 LILRLAREK-------KIELDLEEFGTFEPVVVRFHQEVAPEDSQEKERLIEEDDERWTI 386
Query: 123 VTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENHDFVMSRQPVTL 182
VTRRKK+K +Q+E +RNYRR N +QK K+K K RK KL+ +E+ DF +++ +TL
Sbjct: 387 VTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKK-KKTRKLKLMHKEDKDFPRTQRLITL 446
Query: 183 KDFFPKNFLNDDHEDIPEIVACHAVNTCEEG----------------------------- 242
DFFP FL D ++ P +VACHA+N EE
Sbjct: 447 ADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVSKDLSRFNVDDLLSLPQ 506
Query: 243 ------------------------------------------------------------ 302
Sbjct: 507 EIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLGSKLHNRPLYVSGYVRE 566
Query: 303 --------------------------------------------------------DSSS 362
++ S
Sbjct: 567 QRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQGSQRVIDGVKKVEADS 626
Query: 363 SPSQNA-----------KKESIEEVDACEV----------------------------QS 422
+P A K +S EV + EV +
Sbjct: 627 NPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHISIGTFHSEK 686
Query: 423 KEAYAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTEC--------LEILK----- 446
EA AKS +E +SN ILRYVPLSRRKKGESPF E +E+LK
Sbjct: 687 SEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQGLKVGDIEVLKESFTT 746
BLAST of Spg027085 vs. NCBI nr
Match:
TYK27425.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 124.4 bits (311), Expect = 2.5e-24
Identity = 106/355 (29.86%), Postives = 155/355 (43.66%), Query Frame = 0
Query: 91 KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMS 150
+PI++ QQK Q++ E +E+E + W +VT +K+++ +Q + H + + + N+
Sbjct: 237 EPILVQFQQKITTSNSQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIF 296
Query: 151 QKQK-RKIKGLRKPKLVVEENHDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNT 210
K+K R+ K +RKPK + ++ DF+ RQ +TL +F P+ FL D E+I E+ ACH V
Sbjct: 297 YKKKGRRNKKMRKPKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTV-- 356
Query: 211 CEEGDSSSSPSQNAKKESIEEVDACEVQSKEAYAHPAKSKAPKEEASSNVPILRYVPLSR 270
SI EVD +V SKE
Sbjct: 357 -----------------SIVEVDNNQVSSKEV---------------------------- 416
Query: 271 RKKGESPFTECLEILKKKLQKEGYVIPSSRAGLGYNPPKPVRITRKWKVADAHHITIEEM 330
Sbjct: 417 ------------------------------------------------------------ 476
Query: 331 SDPEDKKNDDSQKISVFDRIKASTTRLSVHQRLKYSSSEKEGQRKTSAPVRRSVFHRLSV 390
D N+ ++ S+FDRIK STTR SV QRL ++ E+E Q TS R S F RLS+
Sbjct: 477 ----DYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSI 479
Query: 391 STSKKVDEPSRSVFDRLQATYGQCKGKLKSFETEESDEMNDNNEFSSTVPSRMKR 445
STSKK D PS SVF+RL+ T Q + + KS + + E ND+++ S VPS MKR
Sbjct: 537 STSKK-DRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKR 479
BLAST of Spg027085 vs. NCBI nr
Match:
KAA0062458.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 124.4 bits (311), Expect = 2.5e-24
Identity = 106/355 (29.86%), Postives = 155/355 (43.66%), Query Frame = 0
Query: 91 KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMS 150
+PI++ QQK Q++ E +E+E + W +VT +K+++ +Q + H + + + N+
Sbjct: 330 EPILVQFQQKITTSNSQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIF 389
Query: 151 QKQK-RKIKGLRKPKLVVEENHDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNT 210
K+K R+ K +RKPK + ++ DF+ RQ +TL +F P+ FL D E+I E+ ACH V
Sbjct: 390 YKKKGRRNKKMRKPKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTV-- 449
Query: 211 CEEGDSSSSPSQNAKKESIEEVDACEVQSKEAYAHPAKSKAPKEEASSNVPILRYVPLSR 270
SI EVD +V SKE
Sbjct: 450 -----------------SIVEVDNNQVSSKEV---------------------------- 509
Query: 271 RKKGESPFTECLEILKKKLQKEGYVIPSSRAGLGYNPPKPVRITRKWKVADAHHITIEEM 330
Sbjct: 510 ------------------------------------------------------------ 569
Query: 331 SDPEDKKNDDSQKISVFDRIKASTTRLSVHQRLKYSSSEKEGQRKTSAPVRRSVFHRLSV 390
D N+ ++ S+FDRIK STTR SV QRL ++ E+E Q TS R S F RLS+
Sbjct: 570 ----DYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSI 572
Query: 391 STSKKVDEPSRSVFDRLQATYGQCKGKLKSFETEESDEMNDNNEFSSTVPSRMKR 445
STSKK D PS SVF+RL+ T Q + + KS + + E ND+++ S VPS MKR
Sbjct: 630 STSKK-DRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKR 572
BLAST of Spg027085 vs. NCBI nr
Match:
KAA0032751.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 117.1 bits (292), Expect = 3.9e-22
Identity = 131/477 (27.46%), Postives = 185/477 (38.78%), Query Frame = 0
Query: 87 VAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRR 146
+A K I + L++K A + Q++ +E +DEGWT+VTRRKK+K +Q+E +RNY R
Sbjct: 54 LAHEKKIELDLKEKVAPEDSQEKERLIEEDDEGWTVVTRRKKRKSTQIQKESRFYRNYTR 113
Query: 147 KNMSQKQKRKIKGLRKPKLVVEENHDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHA 206
N +Q K+K K RK KLV EE+ DF ++ VTL DFFP FL D ++ P +VAC A
Sbjct: 114 GNNTQNNKKK-KKTRKLKLVHEEDKDFPRTQCLVTLADFFPTRFLCDHQDENPGVVACRA 173
Query: 207 VNTCEE-------------------------------------------GDSSSSPS--- 266
+N +E SSS+P+
Sbjct: 174 INATKEESIPLRLLEEEVSKDLSRFNVDGLLSLPQETKTILINASLNLAASSSSAPTATY 233
Query: 267 QNAK-----------------------------KESIEEVDACEVQSKEAYAHPAKSK-- 326
+N++ ++ +++V+A EA +H A +K
Sbjct: 234 ENSRTTYKLLLSRPWIHGNGVVTSTLHQCFKFYQDVVKKVEADSNPFSEAESHFADAKFY 293
Query: 327 -----------------------------------------APKEEAS------------ 362
+ K EAS
Sbjct: 294 LKNDSSPEAVYVEVPLVKREDNLQLKSLASEEPHKSTRTFHSEKSEASTSTTKSVILMGK 353
BLAST of Spg027085 vs. ExPASy TrEMBL
Match:
A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 3.2e-30
Identity = 140/494 (28.34%), Postives = 200/494 (40.49%), Query Frame = 0
Query: 87 VAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRR 146
+A K I + L+++ + Q++ +E +DEGWT+VTRRKK+K +Q+E ++ NYRR
Sbjct: 448 LAREKKIKLDLEEEVTPEDSQEKERLIEEDDEGWTVVTRRKKRKSTLIQKESRLYINYRR 507
Query: 147 KNMSQKQKRKIKGLRKPKLVVEENHDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVA--- 206
N +QK K+K K RK KLV E++ DF +++ VTL DFFP FL D ++ P +VA
Sbjct: 508 GNKTQKNKKK-KKTRKLKLVHEKDKDFPRTQRVVTLADFFPTRFLGDHQDENPGVVASAS 567
Query: 207 --------------CHAVNTCEEG----------------------------DSSSS--- 266
C +++ +E D+ S+
Sbjct: 568 SSSAPIATYESTPYCMSIDFSDEDLLLGSKLHNRPLYVSGYVQEQRVERILVDNGSAVNI 627
Query: 267 -----------------------------------------------------PSQN--- 326
P N
Sbjct: 628 MPKSTMRQLGILMEELSNSKLVIQGFNQGSQRVIDAKFYLKNDGSPEVVSVEVPLVNKED 687
Query: 327 -------AKKESIEEVDACEVQSKEAYAHPAKSKAPKEEASSNVPILRYVPLSRRKKGES 386
A +ES + EA AKS +E +SN PILRYVPLSRRKKGES
Sbjct: 688 NLQLKSLASRESHKSTGTFHSGKSEASTSTAKSVIVMDEKTSNPPILRYVPLSRRKKGES 747
Query: 387 PFTEC--------LEILK------------------------------------------ 391
PF E +E+LK
Sbjct: 748 PFVEFPQGLKVGDIEVLKESFTTPLTKITKQEIKIDLIEASLPQRRTKDGFDPKAYKSMA 807
BLAST of Spg027085 vs. ExPASy TrEMBL
Match:
A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 5.7e-27
Identity = 163/671 (24.29%), Postives = 235/671 (35.02%), Query Frame = 0
Query: 63 MLLKMVEEKDQEIASLRNQMESRDVAESKPIVIWLQQKSARDICQDQLESVENEDEGWTL 122
++L++ EK + +++ + +P+V+ Q+ A + Q++ +E +DE WT+
Sbjct: 327 LILRLAREK-------KIELDLEEFGTFEPVVVRFHQEVAPEDSQEKERLIEEDDERWTI 386
Query: 123 VTRRKKQKKHYVQREPHMFRNYRRKNMSQKQKRKIKGLRKPKLVVEENHDFVMSRQPVTL 182
VTRRKK+K +Q+E +RNYRR N +QK K+K K RK KL+ +E+ DF +++ +TL
Sbjct: 387 VTRRKKRKSTPIQKEHRFYRNYRRWNKAQKNKKK-KKTRKLKLMHKEDKDFPRTQRLITL 446
Query: 183 KDFFPKNFLNDDHEDIPEIVACHAVNTCEEG----------------------------- 242
DFFP FL D ++ P +VACHA+N EE
Sbjct: 447 ADFFPTRFLGDHQDENPGVVACHAINATEEESIPLRSLEEEKVSKDLSRFNVDDLLSLPQ 506
Query: 243 ------------------------------------------------------------ 302
Sbjct: 507 EIKTILINALLNSAASSSSASTVTYESTPYCMSIDFSNDDLLLGSKLHNRPLYVSGYVRE 566
Query: 303 --------------------------------------------------------DSSS 362
++ S
Sbjct: 567 QRVDRILVDNGSAVNIMPKSTIRQLGILMKELSNSKLVIQGFNQGSQRVIDGVKKVEADS 626
Query: 363 SPSQNA-----------KKESIEEVDACEV----------------------------QS 422
+P A K +S EV + EV +
Sbjct: 627 NPFSEAESHFADAKFYLKNDSSPEVVSVEVPLVNREDNLQLKSLASKEPHISIGTFHSEK 686
Query: 423 KEAYAHPAKSKAPKEEASSNVPILRYVPLSRRKKGESPFTEC--------LEILK----- 446
EA AKS +E +SN ILRYVPLSRRKKGESPF E +E+LK
Sbjct: 687 SEASTSTAKSVILMDEKTSNPSILRYVPLSRRKKGESPFVESPQGLKVGDIEVLKESFTT 746
BLAST of Spg027085 vs. ExPASy TrEMBL
Match:
A0A5D3DVW2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001190 PE=4 SV=1)
HSP 1 Score: 124.4 bits (311), Expect = 1.2e-24
Identity = 106/355 (29.86%), Postives = 155/355 (43.66%), Query Frame = 0
Query: 91 KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMS 150
+PI++ QQK Q++ E +E+E + W +VT +K+++ +Q + H + + + N+
Sbjct: 237 EPILVQFQQKITTSNSQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIF 296
Query: 151 QKQK-RKIKGLRKPKLVVEENHDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNT 210
K+K R+ K +RKPK + ++ DF+ RQ +TL +F P+ FL D E+I E+ ACH V
Sbjct: 297 YKKKGRRNKKMRKPKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTV-- 356
Query: 211 CEEGDSSSSPSQNAKKESIEEVDACEVQSKEAYAHPAKSKAPKEEASSNVPILRYVPLSR 270
SI EVD +V SKE
Sbjct: 357 -----------------SIVEVDNNQVSSKEV---------------------------- 416
Query: 271 RKKGESPFTECLEILKKKLQKEGYVIPSSRAGLGYNPPKPVRITRKWKVADAHHITIEEM 330
Sbjct: 417 ------------------------------------------------------------ 476
Query: 331 SDPEDKKNDDSQKISVFDRIKASTTRLSVHQRLKYSSSEKEGQRKTSAPVRRSVFHRLSV 390
D N+ ++ S+FDRIK STTR SV QRL ++ E+E Q TS R S F RLS+
Sbjct: 477 ----DYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSI 479
Query: 391 STSKKVDEPSRSVFDRLQATYGQCKGKLKSFETEESDEMNDNNEFSSTVPSRMKR 445
STSKK D PS SVF+RL+ T Q + + KS + + E ND+++ S VPS MKR
Sbjct: 537 STSKK-DRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKR 479
BLAST of Spg027085 vs. ExPASy TrEMBL
Match:
A0A5A7V4E9 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00430 PE=4 SV=1)
HSP 1 Score: 124.4 bits (311), Expect = 1.2e-24
Identity = 106/355 (29.86%), Postives = 155/355 (43.66%), Query Frame = 0
Query: 91 KPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRRKNMS 150
+PI++ QQK Q++ E +E+E + W +VT +K+++ +Q + H + + + N+
Sbjct: 330 EPILVQFQQKITTSNSQNKEEPIEDEGKEWIVVTHKKERQTSSIQTKSHFHQKHSKGNIF 389
Query: 151 QKQK-RKIKGLRKPKLVVEENHDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHAVNT 210
K+K R+ K +RKPK + ++ DF+ RQ +TL +F P+ FL D E+I E+ ACH V
Sbjct: 390 YKKKGRRNKKMRKPKSIKGKDEDFLQPRQSITLTEFLPRRFLEDHPEEILEVTACHTV-- 449
Query: 211 CEEGDSSSSPSQNAKKESIEEVDACEVQSKEAYAHPAKSKAPKEEASSNVPILRYVPLSR 270
SI EVD +V SKE
Sbjct: 450 -----------------SIVEVDNNQVSSKEV---------------------------- 509
Query: 271 RKKGESPFTECLEILKKKLQKEGYVIPSSRAGLGYNPPKPVRITRKWKVADAHHITIEEM 330
Sbjct: 510 ------------------------------------------------------------ 569
Query: 331 SDPEDKKNDDSQKISVFDRIKASTTRLSVHQRLKYSSSEKEGQRKTSAPVRRSVFHRLSV 390
D N+ ++ S+FDRIK STTR SV QRL ++ E+E Q TS R S F RLS+
Sbjct: 570 ----DYSNEIKKRTSIFDRIKPSTTRSSVFQRLSMATKEEENQCPTSISTRSSAFKRLSI 572
Query: 391 STSKKVDEPSRSVFDRLQATYGQCKGKLKSFETEESDEMNDNNEFSSTVPSRMKR 445
STSKK D PS SVF+RL+ T Q + + KS + + E ND+++ S VPS MKR
Sbjct: 630 STSKK-DRPSTSVFNRLKMTNDQQQREKKSLKAKPFHEENDDDKIHSRVPSHMKR 572
BLAST of Spg027085 vs. ExPASy TrEMBL
Match:
A0A5D3BG93 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold156G00910 PE=4 SV=1)
HSP 1 Score: 117.1 bits (292), Expect = 1.9e-22
Identity = 131/477 (27.46%), Postives = 185/477 (38.78%), Query Frame = 0
Query: 87 VAESKPIVIWLQQKSARDICQDQLESVENEDEGWTLVTRRKKQKKHYVQREPHMFRNYRR 146
+A K I + L++K A + Q++ +E +DEGWT+VTRRKK+K +Q+E +RNY R
Sbjct: 54 LAHEKKIELDLKEKVAPEDSQEKERLIEEDDEGWTVVTRRKKRKSTQIQKESRFYRNYTR 113
Query: 147 KNMSQKQKRKIKGLRKPKLVVEENHDFVMSRQPVTLKDFFPKNFLNDDHEDIPEIVACHA 206
N +Q K+K K RK KLV EE+ DF ++ VTL DFFP FL D ++ P +VAC A
Sbjct: 114 GNNTQNNKKK-KKTRKLKLVHEEDKDFPRTQCLVTLADFFPTRFLCDHQDENPGVVACRA 173
Query: 207 VNTCEE-------------------------------------------GDSSSSPS--- 266
+N +E SSS+P+
Sbjct: 174 INATKEESIPLRLLEEEVSKDLSRFNVDGLLSLPQETKTILINASLNLAASSSSAPTATY 233
Query: 267 QNAK-----------------------------KESIEEVDACEVQSKEAYAHPAKSK-- 326
+N++ ++ +++V+A EA +H A +K
Sbjct: 234 ENSRTTYKLLLSRPWIHGNGVVTSTLHQCFKFYQDVVKKVEADSNPFSEAESHFADAKFY 293
Query: 327 -----------------------------------------APKEEAS------------ 362
+ K EAS
Sbjct: 294 LKNDSSPEAVYVEVPLVKREDNLQLKSLASEEPHKSTRTFHSEKSEASTSTTKSVILMGK 353
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061113.1 | 6.7e-30 | 28.34 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... | [more] |
| TYK05005.1 | 1.2e-26 | 24.29 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK27425.1 | 2.5e-24 | 29.86 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0062458.1 | 2.5e-24 | 29.86 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0032751.1 | 3.9e-22 | 27.46 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ98782.1 ty3-gyp... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BY54 | 3.2e-30 | 28.34 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3C0W6 | 5.7e-27 | 24.29 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3DVW2 | 1.2e-24 | 29.86 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7V4E9 | 1.2e-24 | 29.86 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5D3BG93 | 1.9e-22 | 27.46 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
