Spg026979 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg026979
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRoot meristem growth factor 9-like protein
Locationscaffold8: 8828316 .. 8830277 (-)
RNA-Seq ExpressionSpg026979
SyntenySpg026979
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACAAAACACAACAAACCTTCCCTTTTGTCATCACAACCAGAATTTCAAAGCCTAAAACACAAAGTCTCCGATGGCCGTTCTTCCGTGCAAACGCATCTTCATCTTCATCTTCATCCTCGTCCTTCTTTATTGTTTCTCAAACACAACTATAGGTATATATTATTCTATCTGGTTAACCGACATGTTTATTATAATTGATTATGATAGATTGGATCGGTTTTAGAATTAGGTTAACTCTAACCGACATGTGTTTATTATATTGTGTGATTTTCTCTTTATCTTTTGGAAATATGATTTAAGTTTTACAAATTTTTATTTTTGGCAATATCTCATTATATTTCTTTTTTTTTTTTTTAGTGTTATACTTTTTAATTCATCCATTATAATGAATAAAAATAGGAGTTTTTAAATTTCTCTGGTGCAATATCTTGAATTATACATATAAAAGCTAGATGCATAGATATATAATATATTATATTGTAGAATTTGAAAGGTGTATGCCAAACATAGATATAACAACATATAGGTTAAAAAAAAATAGATATAAGAACCTATATGTTTCTTGATATATTTTTGCATAGATATATAAGTATCTTTTTTATGGAAAAAAAAAATCTTATTTTTGTATTTATTTATTTATAATATCAATTTTATTATTTTATAATCCACTTTTTGATATCCTACTTCAAAAGAAAATTCACTTAAAAAACTTAACTCGAGCAAAACCATAATCAGAAGGGCATTATTCTCTACAATAAAAAACCACAAAAAATAACTATTTGGGCCCCGTTTTATAACAGTTTGGTTTTTGAAAATTAATCCTATACACACCTACTTCCACCTATAAGTTTCTTTGTTTTAGTATCAATCTTCTTCATTGTTTTCAAAAACCAAGTCCAATTTTGAAAACAAAAAAAAAGTAGTTTTCAAAAACTTGTTTTTGTTTTTAGAATTTGGCTAGGAATTCAAATGGATCCTTAATAAGGATGAAAGTCGTGGTAGGGAATTTAGGGAAAACAAGCATAATTTTCAAAAACCAAAAACCAAAAACCAAATGGTTATCAAACGGGGCCTTGGTTTTTGGTTTTTGGTTTTTGAAAATTATGCTTGTTTCATTTCAAATTCTTTACAATGGTTTTCCTCTTTGTTAAAGATACGTTTGAATTCCTAGCTAAATTCTAAAAACAAAAACAAGTTTTTGGAAACTACTTTTTTTAGTTTTTAAAAGTTGATTTGGTTTTTGAAAACAAGGGAAAGATATAGATAAAAAACAAGAAACTTGTGGTTAAAAGTAGAGTTTATAGGCTTAATTTTCAAAAACAAAATGGTTATCAAACGGGACCTTAATAAGTTTAATTCTGGATCAAAACATTAAAAAAGAAGAAGAAAGAAGAAGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAACTCACTCTATGAAGTTCTCTTCCTTCTCTTTCGAAAACCCGAATTTTATGTACAAAGTTCGAATCGGATCGCTGATCGAGATTTCGCCATTGATTTGTATTTTGCAGCAGCAAGAGGTTTGGGAGTGCCTCAGATTGGGAATGATGATCGCAATAACCCAAAAGTACACGATGATCTTAAAGTTCATGATGAAGAACATTTTTCAAGCACTGATGATTTGGTGGCTATGGATTACACTCCAGCGTCCAAGAAGCCTCCAATCCACAACTGAACTCAGATTTTATATTTGTACAAAACTCAAAGCCAAAGAGTTTTATTTTATTATTAATTTGTATGATATTTTACATCTGCCTTTTTTTTTCTTTTTATTTTTGGTTAAAATGAAGCTTCGAGTAATGAGTTATATACAGAAGTGGAATATATGAGCAATTCATGAAACAATGGGGTTTCATACATGTGCATGTGTTTCAACCATATCTTATCTTTTTTATTTTTTTTTATTATTATGTTAAGGTTAAATTGAATAATTGTGAA

mRNA sequence

ATGGCCGTTCTTCCGTGCAAACGCATCTTCATCTTCATCTTCATCCTCGTCCTTCTTTATTGTTTCTCAAACACAACTATAGCAGCAAGAGGTTTGGGAGTGCCTCAGATTGGGAATGATGATCGCAATAACCCAAAAGTACACGATGATCTTAAAGTTCATGATGAAGAACATTTTTCAAGCACTGATGATTTGGTGGCTATGGATTACACTCCAGCGTCCAAGAAGCCTCCAATCCACAACTGA

Coding sequence (CDS)

ATGGCCGTTCTTCCGTGCAAACGCATCTTCATCTTCATCTTCATCCTCGTCCTTCTTTATTGTTTCTCAAACACAACTATAGCAGCAAGAGGTTTGGGAGTGCCTCAGATTGGGAATGATGATCGCAATAACCCAAAAGTACACGATGATCTTAAAGTTCATGATGAAGAACATTTTTCAAGCACTGATGATTTGGTGGCTATGGATTACACTCCAGCGTCCAAGAAGCCTCCAATCCACAACTGA

Protein sequence

MAVLPCKRIFIFIFILVLLYCFSNTTIAARGLGVPQIGNDDRNNPKVHDDLKVHDEEHFSSTDDLVAMDYTPASKKPPIHN
Homology
BLAST of Spg026979 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 1  MAVLPCKRIF-IFIFILVLLYCFSNTTIAARGLGVPQIGNDDRNNPKVH---DDLKVH-- 60
          MA+LPCKRI  +F+ ILVLL CFSN  IAAR +GV ++ N+ +N   ++   D  KVH  
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEH-FSSTDDLVAMDYTPASKKPPIHN 82
          DEEH FSSTDDL AMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

BLAST of Spg026979 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-16
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 1  MAVLPCKRIFI-FIFILVLLYCFSNTTIAARGLGVPQIGNDDRNNPKV---HDDL-KVH- 60
          MA+LPCKRI I F+ IL+LL CFSNT IAAR +GV ++ N+     KV   +DD+ KVH 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 --DEEH-FSSTDDLVAMDYTPASKKPPIHN 82
            DEEH FSSTDDL AMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

BLAST of Spg026979 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 0

Query: 11 IFIFILVLLYCFSNTTIAARGLGVPQIGNDDRNNPKVHDDLKVHDEEHFSSTDDLVAMDY 70
          + + +LVLL  FSN  IA R LGVPQI  DD +  K +DDL VH+EEHFSSTDDL AMDY
Sbjct: 7  VLVLVLVLLCSFSNKVIATRSLGVPQIKKDD-HKLKGNDDLAVHEEEHFSSTDDLGAMDY 66

Query: 71 TPASKKPPIHN 82
          TPASKKPPIHN
Sbjct: 67 TPASKKPPIHN 76

BLAST of Spg026979 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-15
Identity = 53/80 (66.25%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 5  PCKR-IFIFIFILVLLYCFSNTTIAAR--GLGVPQIGNDDRNNPKVHDDLKVHDEEHFSS 64
          PCKR + + + +LVLL CFSNT I AR  G+GVPQI  DD ++ KV  DL V DEEHF S
Sbjct: 3  PCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDD-HSLKVDGDLNVDDEEHFMS 62

Query: 65 TDDLVAMDYTPASKKPPIHN 82
          T DLVAMDYT ASKKPPIHN
Sbjct: 63 TVDLVAMDYTQASKKPPIHN 81

BLAST of Spg026979 vs. NCBI nr
Match: CAB4269024.1 (unnamed protein product [Prunus armeniaca] >CAB4299403.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-06
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 1  MAVLPCKRIFIFIFILVLLYCFSNTTIAARGLGVPQIGNDD--RNNPKVHDDLKVHDEEH 60
          MA +P K + +  FIL+   CF + T   R LGV    +DD  + +  +HD  K  +E+H
Sbjct: 1  MAAIPFKHLLLVAFILL---CFISITAEGRSLGVVSKSSDDGHQKSHDLHDPFKQKEEDH 60

Query: 61 F----SSTDDLVAMDYTPASKKPPIHN 82
                 ++DL+AMDYTPASKKPPIHN
Sbjct: 61 EGLLPDESNDLLAMDYTPASKKPPIHN 84

BLAST of Spg026979 vs. ExPASy TrEMBL
Match: A0A5A7TWX6 (Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002040 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 1  MAVLPCKRIFI-FIFILVLLYCFSNTTIAARGLGVPQIGNDDRNNPKV---HDDL-KVH- 60
          MA+LPCKRI I F+ IL+LL CFSNT IAAR +GV ++ N+     KV   +DD+ KVH 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 --DEEH-FSSTDDLVAMDYTPASKKPPIHN 82
            DEEH FSSTDDL AMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

BLAST of Spg026979 vs. ExPASy TrEMBL
Match: A0A0A0LMV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 56/88 (63.64%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 1  MAVLPCKRIF-IFIFILVLLYCFSNTTIAARGLGVPQIGNDDRNNPKVH---DDLKVH-- 60
          MA+LPCKRI  +F+ ILVLL CFSN  IAAR +GV ++ N+ +N   ++   D  KVH  
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEH-FSSTDDLVAMDYTPASKKPPIHN 82
          DEEH FSSTDDL AMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

BLAST of Spg026979 vs. ExPASy TrEMBL
Match: A0A6J5WGE6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS13997 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.9e-07
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 1  MAVLPCKRIFIFIFILVLLYCFSNTTIAARGLGVPQIGNDD--RNNPKVHDDLKVHDEEH 60
          MA +P K + +  FIL+   CF + T   R LGV    +DD  + +  +HD  K  +E+H
Sbjct: 1  MAAIPFKHLLLVAFILL---CFISITAEGRSLGVVSKSSDDGHQKSHDLHDPFKQKEEDH 60

Query: 61 F----SSTDDLVAMDYTPASKKPPIHN 82
                 ++DL+AMDYTPASKKPPIHN
Sbjct: 61 EGLLPDESNDLLAMDYTPASKKPPIHN 84

BLAST of Spg026979 vs. ExPASy TrEMBL
Match: A0A314YKW1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_08970 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.0e-06
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 1  MAVLPCKRIFIFIFILVLLYCFSNTTIAARGLGVPQIGNDD--RNNPKVHDDLKVHDEEH 60
          MA +P K + +  FIL+   CF + T   R LGV     DD  + +  +HD  K  +E+H
Sbjct: 1  MAAIPFKHLLLVAFILL---CFISITAEGRSLGVVSKSADDGHQKSHDLHDPFKQKEEDH 60

Query: 61 ----FSSTDDLVAMDYTPASKKPPIHN 82
                 ++DL+AMDYTPASKKPPIHN
Sbjct: 61 EGLLSDESNDLLAMDYTPASKKPPIHN 84

BLAST of Spg026979 vs. ExPASy TrEMBL
Match: A0A5E4GC38 (PREDICTED: Root meristem growth factor 9 OS=Prunus dulcis OX=3755 GN=ALMOND_2B026962 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 0

Query: 1  MAVLPCKRIFIFIFILVLLYCFSNTTIAARGLGVPQIGNDD--RNNPKVHDDLKVHDEEH 60
          MA +P K + +  FIL+   CF + T   R LGV     DD  + +  +HD  K  +E+H
Sbjct: 1  MAAIPFKHLLLVAFILL---CFISITAEGRSLGVVSKSADDGHQKSHDLHDPFKQKEEDH 60

Query: 61 F----SSTDDLVAMDYTPASKKPPIHN 82
                 ++DL+AMDYTPASKKPPIHN
Sbjct: 61 EGLLPDESNDLLAMDYTPASKKPPIHN 84

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN62102.12.2e-1663.64hypothetical protein Csa_006036 [Cucumis sativus][more]
KAA0045905.12.2e-1665.56Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684... [more]
KAG6571377.11.1e-1569.01hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605281.11.4e-1566.25hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori... [more]
CAB4269024.11.2e-0643.68unnamed protein product [Prunus armeniaca] >CAB4299403.1 unnamed protein product... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TWX61.1e-1665.56Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=119469... [more]
A0A0A0LMV61.1e-1663.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1[more]
A0A6J5WGE65.9e-0743.68Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS13997 PE=4 S... [more]
A0A314YKW11.0e-0643.68Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_089... [more]
A0A5E4GC381.3e-0643.68PREDICTED: Root meristem growth factor 9 OS=Prunus dulcis OX=3755 GN=ALMOND_2B02... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..81
NoneNo IPR availablePANTHERPTHR33743:SF16ROOT MERISTEM GROWTH FACTOR 9coord: 1..81
IPR039337Protein GOLVEN 2PANTHERPTHR33743FAMILY NOT NAMEDcoord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg026979.1Spg026979.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008083 growth factor activity