Spg025990 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg025990
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	AD domain-containing protein
Location	scaffold7: 1797136 .. 1800194 (+)
RNA-Seq Expression	Spg025990
Synteny	Spg025990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGAGGAAGCGAAGGTTCCAACTTTTACAGCGAGGAAGAAGGCGAAAATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAACTTCGTTTAATCATTATCACTGTCTCTGCTTCTTGAATTCCTTGACTTCTTTTTCTGTCTTCTCTTTATTTTGCGGTTGCCACAGGAGGGTTCGAAGCCAGGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGTACGTCAACAACCCATTGGAAATTCTTGTGGGTTTTCGTTGCTTAGTTGAGATTTTTCCAGTTTCTGATTCAATTATGTGTTCTCATTCTCTTTTGGTCATCGGGTCGTTCTGAATTTTGCAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGTAAGTTTAGTTTTATTTTGTTCGTAGGAATATTTGGAAAGTCTATTTCGATTGTACTTAAACATTTACGAAGATTTCATTCATACTATTTTTAGTCCATGCCCACGCATTTTTGGTAATATGTGGCAATTTTATCAGTTTTCTTTGCTTATGCAATTGTTCCATTAATCCTGATCATTTCTATATATTGATTTCATATTAAGAGAAGCCATGAATGCTTGTGTCTTTATCATTATATATGCCTTTTTATGCGTGCTGGGTTGGTGAACTTGTTTACGGATCATTACAGTGCATTCTCCCTCTTACTCAAGTTCTTCTCTATAAATTCTTTAGAAGCTTAGCTACATTGGAAGATAGTTTAGTTTACCGGGATGAGGAAATTGGACCATAGACCAATATTTTGGATTTGAGGGGAGTACAAAAGCCATATCACCTTCATGAATCTGTGACATTTTTGGAAATTGAAGAGGTCTCTATGATAACTAGGAAGTCCATGTAATGGTCTAGGTCTGCCTGATTTTCAACCTTCACAACACACGGTTTAATGGTTTTGATTAGTTATCACTTATCTACTAAACACCATGATGTGTTATTGTGTTGTGCCATATGTTTCCTATAGTGTTGGCAACGGACGAGATGCAATAATTCATCCTTTTAGGTGCAATGGGATATGAACATTGTTGTCCAGTTTGTTCAGCATAGTATTTTTTTTTTACTCTGAACATTTACCTCAATGATGATGAGATAATGGAAAAAATTGGGTAATTTAAACTTAGTGATTTGGCTTTACTATAATTAAGACCTTGAGCTACTGTACCATAGTTCTAATTCTTGTGCTATCAACCAAGATTGTTGGCAATCTTAGAAATCATTTTATAAGTTTTAACAAGTCTTTGGATGATATCACATTCAGACTTTACCTTTCCCTTAAACCATGTATGGTACTTGCATCTTTTGGTTTCTATGATGTTGATCTTTTTACGAACTTCTGAAAGTCACGAAAGTTGTTTAGTAGCACCACTCAATTAGTTTTAAATATAATTGCTTTCCAACAGTTATGGAACTTATTTATTTTTGCTGTTCCCAATGCAGAAGTCATAGTTGTTATTGCTGTGGTGCAAGTTCCTCGATATGAAGTTGGAACTTATGTCAGCTCCATTCTTTATTTGGTTTTTTGTAGAACCAGGACGTGTTATGTTAGTTTAAGTTTAGTTAATAATCTTGAGAACTTATTTTTTTCAGTACTGACTGGTTTTGGTAACGTATATGCTTTACATACTTTTGAGCCTGAGAAGTAGTAATCAAGAACTTTTTCTTCAAGAGAATATTGTTTATTCTTATGTAAATGATGTCAGTGACTTGGTTAGAATGATGAATTTTACTGTTAATGTTGCTAAACCAAATGCATCTATCTTTTTGGCTTCTGTTATGGAGTCTGAAAATTGGAGAATGGTTTGGGCACCTGGTGGAGTTGTAAACCCAAGTATGCTCATCTGATGATCTGATTTTATGAGGCATGGACATACAGAATAACAGATGCAACAGAAATGAGATACAAAATCATCACCATAGGCTTTTATCTTCTCGAACTTTTTATTGCATGGATCATTTTCTCTTGCTGTTTCAGCTGTATAATTTTCCTACTCTGTAGTCTCTGCATTATTGTTTTGATATTCTGACTAAGGCGATTGGTGCAATCCTAGGCTTCCTGTTCGCTGGGACAAGACTGTCATAGTTGTAATGAATGAAGTACGTGTTAGCAATCCCTATCTACCAGAATCTGTTACTGGAGGCACCCCTGCTGCTAATGAGCGGGTGAAGAAAGTGGTAAGAATCTTTTGGTAATGCTGTTTGATTCATACTGAAAAACTTAACAATGGATATAACTAGCTTTTCACTTCTTTCTTTGCAATCCCTTGCACAAACCTCTTTACCTATCCATTTTTTTCTTAAAGCTTGAACTGGAGAGGAAGCGGTTGCAAGTTCGTGGCGTTGGTCAGTGATGGTTATTCATCCTTATCCTTCTTTACTGGGTGACAGGCGATGGCCTGTACTGAGCCTTTTGCTAATTGGGGAGAAGGTATAATCTCTTTTAGAGGCATCTCAGTGTCAGCAATCACGAAGGGATTTAGTGTTTAAGTGGTACCTAATCTGTTGCCAAAGTTTTTACGTTTGTTGAACTTCTGGTTGTTGATTTTCTCCTGTTTATGGACTGCACTGGACACACCCTGGCAAAGCTTTTTGGGGGTCCATATTTAAAGTTTTCCAAGATTTGCTCTGATGCAATGTATCAAATTTGAAATGAGCAAACTCGATGTAATAACTGCCCACCTTTTTTTCAATCATAATGTGGAGAAACTAACCCTGATGTATTTGGAAAATTGCAAGAATAGGTTTCTCATGTTTTAC

mRNA sequence

GAGGAGGAAGCGAAGGTTCCAACTTTTACAGCGAGGAAGAAGGCGAAAATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAACTTCGTTTAATCATTATCACTGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGTAA

Coding sequence (CDS)

GAGGAGGAAGCGAAGGTTCCAACTTTTACAGCGAGGAAGAAGGCGAAAATGGCACTGGACGGTAGCGGCAATGGCGATGACTTCACTGTTGGGTCCTTCTTCTCCATTAAGACGACCTTAGGCGATGAATTTCAAGGACAAGTCATTACCTTTGACCGCCCCTCCAACATCCTCGTCCTTCATATCCTTTCTGGGTTTCTAACTTCGTTTAATCATTATCACTGCCCTCGTAGGAACATAAGGCTGCTGAAGGCCAATTATATTAAGGAGTTTTCGTTCTTGGGACATGGCGAAGATCCTCTTGATCTCAAAAAGTGTTACCTCGATCTCAACACTCTCCGTGCTCGAGAGGAACTGGCCATTAGGCAGGCAGAGGCGGAGGCGGAGAGGATAGGAGTGGGTGTGACCAGCGAGGCCCAAAGTATTTTTGACGCCTTATCTAAAACGTAA

Protein sequence

EEEAKVPTFTARKKAKMALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT

Homology

[Close]

BLAST of Spg025990 vs. NCBI nr
Match: XP_038892233.1 (protein LSM12 homolog A-like [Benincasa hispida])

HSP 1 Score: 219.5 bits (558), Expect = 1.9e-53
Identity = 117/133 (87.97%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCP 76
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           P
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGS--------KPGP 60

Query: 77  RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVT 136
           RRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVT
Sbjct: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVT 120

Query: 137 SEAQSIFDALSKT 150
           SEAQSIFDALSKT
Sbjct: 121 SEAQSIFDALSKT 125

[Close]

BLAST of Spg025990 vs. NCBI nr
Match: XP_004135229.1 (protein LSM12 homolog A [Cucumis sativus])

HSP 1 Score: 219.5 bits (558), Expect = 1.9e-53
Identity = 117/133 (87.97%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCP 76
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           P
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGS--------KPGP 60

Query: 77  RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVT 136
           RRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVT
Sbjct: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVT 120

Query: 137 SEAQSIFDALSKT 150
           SEAQSIFDALSKT
Sbjct: 121 SEAQSIFDALSKT 125

[Close]

BLAST of Spg025990 vs. NCBI nr
Match: XP_022151106.1 (protein LSM12 homolog [Momordica charantia])

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-52
Identity = 115/133 (86.47%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCP 76
           MALDGSGNGDDF VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           P
Sbjct: 1   MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGS--------KPGP 60

Query: 77  RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVT 136
            RNIRLLKANYIKEF+FLGHGEDPLDLKKCYLDLN+LRAREELAIRQAEAEAERIGVGVT
Sbjct: 61  HRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVT 120

Query: 137 SEAQSIFDALSKT 150
           SEAQSIFDALSKT
Sbjct: 121 SEAQSIFDALSKT 125

[Close]

BLAST of Spg025990 vs. NCBI nr
Match: KGN52415.2 (hypothetical protein Csa_008581 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 3.5e-52
Identity = 114/133 (85.71%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCP 76
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL                 P
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILE-----------GSKPGP 60

Query: 77  RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVT 136
           RRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVT
Sbjct: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVT 120

Query: 137 SEAQSIFDALSKT 150
           SEAQSIFDALSKT
Sbjct: 121 SEAQSIFDALSKT 122

[Close]

BLAST of Spg025990 vs. NCBI nr
Match: TYK15583.1 (protein LSM12-like protein A [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 3.5e-52
Identity = 114/133 (85.71%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCP 76
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL                 P
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILE-----------GSKPGP 60

Query: 77  RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVT 136
           RRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVT
Sbjct: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVT 120

Query: 137 SEAQSIFDALSKT 150
           SEAQSIFDALSKT
Sbjct: 121 SEAQSIFDALSKT 122

[Close]

BLAST of Spg025990 vs. ExPASy Swiss-Prot
Match: Q6PBA2 (Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.8e-06
Identity = 41/135 (30.37%), Postives = 58/135 (42.96%), Query Frame = 0


Query: 23  GNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPR----- 82
           G G+ F+VGS  S  T LG   QG+V+ FD PS +L L              CP      
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTL-------------KCPSSSGKP 64

Query: 83  --RNIRLLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVG 142
              ++ L+   Y+ E   +    E P  L    +     RAR E   + ++A A  I  G
Sbjct: 65  NLSDVILINLAYVSEVDIINDRTETPPPLASLNISKLANRARTEKEDKLSQAYA--ISAG 124

Query: 143 VTSEAQSIFDALSKT 150
           V+ E Q +F  + KT
Sbjct: 125 VSIEGQQLFQTIHKT 124

[Close]

BLAST of Spg025990 vs. ExPASy Swiss-Prot
Match: Q6GP89 (Protein LSM12 homolog OS=Xenopus laevis OX=8355 GN=lsm12 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-05
Identity = 36/129 (27.91%), Postives = 61/129 (47.29%), Query Frame = 0


Query: 22  SGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIR 81
           +G G+ F +G++ S +T      QG+V+ FD PS +L L   S      NH      +I 
Sbjct: 2   AGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPSS-SGKANH-----ADIL 61

Query: 82  LLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQ 141
           LL  +Y+ +   +    + P  L    L++  L +R  L   +  ++A  I  GV+ + Q
Sbjct: 62  LLNLDYVSDVEVINERTQTPPPLAS--LNITKLASRARLEKEEKLSQAYAISAGVSLDGQ 121

Query: 142 SIFDALSKT 150
            +F  + KT
Sbjct: 122 QLFQTIHKT 122

[Close]

BLAST of Spg025990 vs. ExPASy Swiss-Prot
Match: Q6P833 (Protein LSM12 homolog OS=Xenopus tropicalis OX=8364 GN=lsm12 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 3.4e-05
Identity = 36/129 (27.91%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 22  SGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIR 81
           +G G+ F +G++ S +T      QG+V+ FD PS +L L   S   +S    H    +I 
Sbjct: 2   AGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPS---SSGKPNHA---DIL 61

Query: 82  LLKANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQ 141
           LL  +Y+ +   +    + P  L    L++  L +R  L   +  ++A  I  GV+ + Q
Sbjct: 62  LLNLDYVSDVEVINERTQTPPPLAS--LNITKLASRARLEKEEKLSQAYAISAGVSLDGQ 121

Query: 142 SIFDALSKT 150
            +F  + KT
Sbjct: 122 QLFQTIHKT 122

[Close]

BLAST of Spg025990 vs. ExPASy Swiss-Prot
Match: Q6NSN1 (Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.8e-05
Identity = 38/128 (29.69%), Postives = 56/128 (43.75%), Query Frame = 0


Query: 23  GNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRL 82
           G G+ F+VGS  S  T LG   QG+V+ FD PS +L L          +       ++ L
Sbjct: 5   GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCAP------SSGKPNLSDVML 64

Query: 83  LKANYIKEFSFL-GHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQS 142
           +   Y+ E   +    E P  L     +    RAR E   + + A A  +  GV+ E Q 
Sbjct: 65  VNLAYVSEVDIITDRAETPPPLASLNFNKLVNRARAEKEDKLSLAYA--VSAGVSVEGQQ 124

Query: 143 IFDALSKT 150
           +F  + KT
Sbjct: 125 LFQTIHKT 124

[Close]

BLAST of Spg025990 vs. ExPASy Swiss-Prot
Match: Q5ZML5 (Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-04
Identity = 37/126 (29.37%), Postives = 59/126 (46.83%), Query Frame = 0


Query: 25  GDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCPRRNIRLLK 84
           G+ F+VGS  S +T      QG+V+ FD PS +L L   S   +S    H    +I L+ 
Sbjct: 5   GECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALKCPS---SSGKPNHA---DILLVN 64

Query: 85  ANYIKEFSFLG-HGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIF 144
             Y+ E   +    E P  L    L+++ L  +  +   +  ++A  I  GV+ E Q +F
Sbjct: 65  LQYVSEVEIINDRTETPPPLAS--LNVSKLANKARMEKEEKLSQAYAISAGVSLEGQQLF 122

Query: 145 DALSKT 150
             + KT
Sbjct: 125 QTIHKT 122

[Close]

BLAST of Spg025990 vs. ExPASy TrEMBL
Match: A0A0A0KQA9 (AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 9.1e-54
Identity = 117/133 (87.97%), Postives = 118/133 (88.72%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCP 76
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           P
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGS--------KPGP 60

Query: 77  RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVT 136
           RRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVT
Sbjct: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVT 120

Query: 137 SEAQSIFDALSKT 150
           SEAQSIFDALSKT
Sbjct: 121 SEAQSIFDALSKT 125

[Close]

BLAST of Spg025990 vs. ExPASy TrEMBL
Match: A0A6J1DDK3 (protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 7.7e-53
Identity = 115/133 (86.47%), Postives = 117/133 (87.97%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCP 76
           MALDGSGNGDDF VGSFFSIKTTLGDEFQGQVITFDRPSNILVL   S           P
Sbjct: 1   MALDGSGNGDDFAVGSFFSIKTTLGDEFQGQVITFDRPSNILVLQEGS--------KPGP 60

Query: 77  RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVT 136
            RNIRLLKANYIKEF+FLGHGEDPLDLKKCYLDLN+LRAREELAIRQAEAEAERIGVGVT
Sbjct: 61  HRNIRLLKANYIKEFTFLGHGEDPLDLKKCYLDLNSLRAREELAIRQAEAEAERIGVGVT 120

Query: 137 SEAQSIFDALSKT 150
           SEAQSIFDALSKT
Sbjct: 121 SEAQSIFDALSKT 125

[Close]

BLAST of Spg025990 vs. ExPASy TrEMBL
Match: A0A5D3CUL6 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00770 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.7e-52
Identity = 114/133 (85.71%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCP 76
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL                 P
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILE-----------GSKPGP 60

Query: 77  RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVT 136
           RRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVT
Sbjct: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVT 120

Query: 137 SEAQSIFDALSKT 150
           SEAQSIFDALSKT
Sbjct: 121 SEAQSIFDALSKT 122

[Close]

BLAST of Spg025990 vs. ExPASy TrEMBL
Match: A0A5A7SWT7 (Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G003390 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.7e-52
Identity = 114/133 (85.71%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYHCP 76
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL                 P
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILE-----------GSKPGP 60

Query: 77  RRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVGVT 136
           RRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQAEAEAERIGVGVT
Sbjct: 61  RRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQAEAEAERIGVGVT 120

Query: 137 SEAQSIFDALSKT 150
           SEAQSIFDALSKT
Sbjct: 121 SEAQSIFDALSKT 122

[Close]

BLAST of Spg025990 vs. ExPASy TrEMBL
Match: A0A1S3BGE7 (protein LSM12 homolog A OS=Cucumis melo OX=3656 GN=LOC103489557 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 5.0e-52
Identity = 116/146 (79.45%), Postives = 120/146 (82.19%), Query Frame = 0


Query: 17  MALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVL--HILSGFLTSFNH-- 76
           MALDGSGNGDDF+VGSFFSIKTTLGDEFQGQVITFDRPSNIL        G + +F+   
Sbjct: 1   MALDGSGNGDDFSVGSFFSIKTTLGDEFQGQVITFDRPSNILTTLGDEFQGQVITFDRPS 60

Query: 77  ---------YHCPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQ 136
                       PRRNIRLLKANYIKEFSFLGHGEDPLDLK CYLDLNTLRAREELAIRQ
Sbjct: 61  NILVLQEGSKPGPRRNIRLLKANYIKEFSFLGHGEDPLDLKNCYLDLNTLRAREELAIRQ 120

Query: 137 AEAEAERIGVGVTSEAQSIFDALSKT 150
           AEAEAERIGVGVTSEAQSIFDALSKT
Sbjct: 121 AEAEAERIGVGVTSEAQSIFDALSKT 146

[Close]

BLAST of Spg025990 vs. TAIR 10
Match: AT1G24050.1 (RNA-processing, Lsm domain )

HSP 1 Score: 115.2 bits (287), Expect = 4.6e-26
Identity = 66/135 (48.89%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 15  AKMALDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHILSGFLTSFNHYH 74
           A +A    G G+ F VG+ +S+K   GDEF+G V+ +D   N +      G      H  
Sbjct: 6   ASVASAIGGEGEKFAVGNIYSVKVITGDEFRGIVMAYDPIPNFVFFE--EGTKPRPGHL- 65

Query: 75  CPRRNIRLLKANYIKEFSFLGHGEDPLDLKKCYLDLNTLRAREELAIRQAEAEAERIGVG 134
              +N R++ A++I   S+LG  EDPLD     +DLN LRA+E LAIRQAEA+AER+GVG
Sbjct: 66  ---KNTRMVNASFITGLSYLGKTEDPLDSDNFSVDLNGLRAKEALAIRQAEADAERMGVG 125

Query: 135 VTSEAQSIFDALSKT 150
           VT+EAQSIFDALSKT
Sbjct: 126 VTAEAQSIFDALSKT 134

[Close]

BLAST of Spg025990 vs. TAIR 10
Match: AT1G70220.1 (RNA-processing, Lsm domain )

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-11
Identity = 51/165 (30.91%), Postives = 76/165 (46.06%), Query Frame = 0


Query: 19  LDGSGNGDDFTVGSFFSIKTTLGDEFQGQVITFDRPSNILVLHIL-----SGFLTSFNHY 78
           +D  G  + F VG  +++K T GD+F G V+ +D   N  V  IL     S  + S+  Y
Sbjct: 11  VDSGGEDEKFEVGKVYAVKLTTGDQFNGIVLAYDSEPNFAVFDILFRNRYSQLVDSYLCY 70

Query: 79  H---------CPR--------------------RNIRLLKANYIKEFSFLGHGEDPLDLK 138
                     C R                    +++R++  NYI E   LG  ++ L  K
Sbjct: 71  FAFLISSSCVCFRVFLDGLVILQEGTKPKPLDSKSLRMVNVNYITEMKNLGRVKERL-AK 130

Query: 139 KCYLDLNTLRAREELAIRQAEAEAERIGVGVTSEAQSIFDALSKT 150
              ++L+ L  +E  AI    +  E+IG GVT+E Q IFDA+SKT
Sbjct: 131 NTLVNLDGLIEKENHAI----SNVEKIGFGVTAEGQMIFDAISKT 170

The following BLAST results are available for this feature:

BLAST of Spg025990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892233.1	1.9e-53	87.97	protein LSM12 homolog A-like [Benincasa hispida]	[more]
XP_004135229.1	1.9e-53	87.97	protein LSM12 homolog A [Cucumis sativus]	[more]
XP_022151106.1	1.6e-52	86.47	protein LSM12 homolog [Momordica charantia]	[more]
KGN52415.2	3.5e-52	85.71	hypothetical protein Csa_008581 [Cucumis sativus]	[more]
TYK15583.1	3.5e-52	85.71	protein LSM12-like protein A [Cucumis melo var. makuwa]	[more]

BLAST of Spg025990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBA2	6.8e-06	30.37	Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1	[more]
Q6GP89	2.6e-05	27.91	Protein LSM12 homolog OS=Xenopus laevis OX=8355 GN=lsm12 PE=2 SV=1	[more]
Q6P833	3.4e-05	27.91	Protein LSM12 homolog OS=Xenopus tropicalis OX=8364 GN=lsm12 PE=2 SV=2	[more]
Q6NSN1	9.8e-05	29.69	Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1	[more]
Q5ZML5	2.2e-04	29.37	Protein LSM12 homolog OS=Gallus gallus OX=9031 GN=LSM12 PE=2 SV=1	[more]

BLAST of Spg025990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQA9	9.1e-54	87.97	AD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G603270 PE=3 SV=...	[more]
A0A6J1DDK3	7.7e-53	86.47	protein LSM12 homolog OS=Momordica charantia OX=3673 GN=LOC111019118 PE=3 SV=1	[more]
A0A5D3CUL6	1.7e-52	85.71	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7SWT7	1.7e-52	85.71	Protein LSM12-like protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3BGE7	5.0e-52	79.45	protein LSM12 homolog A OS=Cucumis melo OX=3656 GN=LOC103489557 PE=3 SV=1	[more]

BLAST of Spg025990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24050.1	4.6e-26	48.89	RNA-processing, Lsm domain	[more]
AT1G70220.1	3.2e-11	30.91	RNA-processing, Lsm domain	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..149
IPR019181	Anticodon-binding domain	PFAM	PF09793	AD	coord: 108..149 e-value: 3.7E-8 score: 33.3
IPR039683	Protein Lsm12-like	PANTHER	PTHR13542	LSM12 HOMOLOG	coord: 23..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg025990.1	Spg025990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030574	collagen catabolic process
biological_process	GO:0030198	extracellular matrix organization
biological_process	GO:0006508	proteolysis
cellular_component	GO:0031012	extracellular matrix
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008270	zinc ion binding