Homology
BLAST of Spg025336 vs. NCBI nr
Match:
KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 330.9 bits (847), Expect = 1.7e-86
Identity = 180/541 (33.27%), Postives = 273/541 (50.46%), Query Frame = 0
Query: 4 GSFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRV 63
G+ NL ++ DDIL+F++DD++ + N+ II F+ ASGL INL+KST+S INV R
Sbjct: 3 GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAART 62
Query: 64 SMIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTL 123
IAS+WG S + LPI+YLG+PLGGK + +FW + EKI++K+ +W+++ LSKGG++TL
Sbjct: 63 EQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITL 122
Query: 124 LQSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGG 183
++S L +P Y ++ K P+S CK IEK +R FLW ++ HL+ W +T PK GG
Sbjct: 123 IKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGG 182
Query: 184 LGLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMA 243
LG+ + K N ALL KW+WR+ +ED LW K+IN KY+SL+ G IP + ++SSRSPW +
Sbjct: 183 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 242
Query: 244 ISNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNT 303
I + F + W++++GR FW W ++PL F R F+L+ +K+ + W NT
Sbjct: 243 ICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSFHYPRLFALSTNKDSSIRDMWNNT 302
Query: 304 NL-WNFFPRRPLLDRENSVWADFTASLPKLDLSNG------------------------- 363
+ W+ PRR L + E +WA+ SL NG
Sbjct: 303 LMDWDLNPRRQLREWEYPLWAELKNSLNASFCENGKDSPTWTLNSNGLYTVASVKKALQQ 362
Query: 364 ------------------------------------------------------------ 423
Sbjct: 363 PDQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVM 422
Query: 424 ------------------------ISSAIPLHAGC-----LCEEFLAKKALSQRDTIILN 429
ISS + + C LC + K ++++ I+ N
Sbjct: 423 CKRNDEDRIHLFILCPIAKSIWRLISSHLNSNVNCLSPKDLCITMCSWKQKTKKNVILYN 482
BLAST of Spg025336 vs. NCBI nr
Match:
XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])
HSP 1 Score: 327.4 bits (838), Expect = 1.8e-85
Identity = 178/541 (32.90%), Postives = 273/541 (50.46%), Query Frame = 0
Query: 4 GSFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRV 63
G+ NL ++ DDIL+F++DD++ + N+ II F+ ASGL INL+KST+S INV R
Sbjct: 516 GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDASRT 575
Query: 64 SMIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTL 123
IAS+WG S + LPI+YLG+PLGGK + +FW + EKI++K+ +W+++ LSKGG++TL
Sbjct: 576 EQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITL 635
Query: 124 LQSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGG 183
++S L +P Y ++ KVP+S CK IEK +R FLW ++ HL+ W +T K +GG
Sbjct: 636 IKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSSKEKGG 695
Query: 184 LGLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMA 243
LG+ + K N ALL KW+WR+ +ED LW K+IN KY+SL+ G IP + ++SSRSPW +
Sbjct: 696 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 755
Query: 244 ISNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNT 303
I + F + W++++GR FW W ++PL R ++L+ +K + W NT
Sbjct: 756 ICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNT 815
Query: 304 NL-WNFFPRRPLLDRENSVWADFTASLPKLDLSNG------------------------- 363
+ W+ PRR L + E+ +WA+ SL NG
Sbjct: 816 LMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGNDSPMWTLNSNGLYTVASVKKTLQQ 875
Query: 364 ------------------------------------------------------------ 423
Sbjct: 876 PEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVM 935
Query: 424 ------------------------ISSAIPLHAGC-----LCEEFLAKKALSQRDTIILN 429
ISS + + C LC + K ++++ I+ N
Sbjct: 936 CKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCLSPKELCITMCSWKQKTKKNVILFN 995
BLAST of Spg025336 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 325.9 bits (834), Expect = 5.4e-85
Identity = 185/541 (34.20%), Postives = 258/541 (47.69%), Query Frame = 0
Query: 5 SFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRVS 64
+ NL I+ DDILIF++D ++ + N+ I+ FE ASGL INLSKST+ INV R +
Sbjct: 497 NLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAN 556
Query: 65 MIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTLL 124
I WG S LP +YLGMPLGGKP SS+FWD +++KI +K+ +W+++ LSKGGR+TL+
Sbjct: 557 SIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLI 616
Query: 125 QSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGGL 184
S L +P+Y +V KVP + ++IE +R FLW+G + LIRW+ V PK +GGL
Sbjct: 617 NSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGL 676
Query: 185 GLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMAI 244
G+ N ALL KW+W+F E + LW +LI KY G PS KY+S+ SPW A+
Sbjct: 677 GIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAV 736
Query: 245 SNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNTN 304
+N F+ N W++ DG I FW D W G++PL V R F+L+ +K V+ W N +
Sbjct: 737 TNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLW-NPS 796
Query: 305 L--WNFFPRRPLLDRENSVWADFTASLP--------------------------KLDLSN 364
L WN RPL D E ++W + ASLP K DLS
Sbjct: 797 LKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSE 856
Query: 365 GISSAIPLHA------------------------GC------------------------ 424
+S H GC
Sbjct: 857 ASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC 916
Query: 425 ---------------------------------------LCEEFLAKKALSQRDTIILNI 430
L + + +Q+ I N
Sbjct: 917 NKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNT 976
BLAST of Spg025336 vs. NCBI nr
Match:
KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 325.9 bits (834), Expect = 5.4e-85
Identity = 177/541 (32.72%), Postives = 272/541 (50.28%), Query Frame = 0
Query: 4 GSFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRV 63
G+ NL ++ DDIL+F++DD++ + N+ II F+ ASGL INL+KST+S INV R
Sbjct: 516 GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDASRT 575
Query: 64 SMIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTL 123
IAS+WG S + LPI+YLG+PLGGK + +FW + EKI++K+ +W+++ LSKGG++TL
Sbjct: 576 EQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITL 635
Query: 124 LQSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGG 183
++S L +P Y ++ K P+S CK IEK +R FLW ++ HL+ W +T K +GG
Sbjct: 636 IKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSSKEKGG 695
Query: 184 LGLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMA 243
LG+ + K N ALL KW+WR+ +ED LW K+IN KY+SL+ G IP + ++SSRSPW +
Sbjct: 696 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 755
Query: 244 ISNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNT 303
I + F + W++++GR FW W ++PL R ++L+ +K + W NT
Sbjct: 756 ICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNT 815
Query: 304 NL-WNFFPRRPLLDRENSVWADFTASLPKLDLSNG------------------------- 363
+ W+ PRR L + E+ +WA+ SL NG
Sbjct: 816 LMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGNDSPMWTLNSNGLYTVASVKKTLQQ 875
Query: 364 ------------------------------------------------------------ 423
Sbjct: 876 PEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVM 935
Query: 424 ------------------------ISSAIPLHAGC-----LCEEFLAKKALSQRDTIILN 429
ISS + + C LC + K ++++ I+ N
Sbjct: 936 CKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCLSPKELCITMCSWKQKTKKNVILFN 995
BLAST of Spg025336 vs. NCBI nr
Match:
TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 323.9 bits (829), Expect = 2.0e-84
Identity = 178/541 (32.90%), Postives = 273/541 (50.46%), Query Frame = 0
Query: 4 GSFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRV 63
G+ NL ++ DDIL+F++DD++ + N+ II F+ ASGL INL+KST+S INV R
Sbjct: 579 GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDASRT 638
Query: 64 SMIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTL 123
IAS+WG S + LPI+YLG+PLGGK + +FW + EKI++K+ +W+++ LSKGG++TL
Sbjct: 639 EQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVEEKINKKLASWKYSMLSKGGKITL 698
Query: 124 LQSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGG 183
++S L +P Y ++ K P+S CK IEK +R FLW ++ HL+ W +T K +GG
Sbjct: 699 IKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSSKEKGG 758
Query: 184 LGLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMA 243
LG+ + K N ALL KW+WR+ +ED LW K+IN KY+SL+ G IP + ++SSRSPW +
Sbjct: 759 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 818
Query: 244 ISNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNT 303
I + F + W++++GR FW W ++PL R ++L+ +K + W NT
Sbjct: 819 ICKGLEWFQRHVSWKIKNGRSFSFWHGHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNT 878
Query: 304 NL-WNFFPRRPLLDRENSVWADFTAS---------------------------------- 363
+ W+ PRR L + E +WA+ S
Sbjct: 879 LMDWDLNPRRQLREWELPLWAELKNSINASFCENGKDSPMWALNSNGLYTVASVKKALQQ 938
Query: 364 -----------------------------------------------LPKL--------- 423
LPKL
Sbjct: 939 PEQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPKLCSRPSWCVM 998
Query: 424 -------------------DLSNGISSAIPLHAGC-----LCEEFLAKKALSQRDTIILN 429
+ ISS + + C LC + K ++++ I+ N
Sbjct: 999 CKRNDEDRIHLFILCPIAKSIWRTISSHLNSNVNCLSPKELCITMCSWKQKTKKNVILFN 1058
BLAST of Spg025336 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 132.1 bits (331), Expect = 1.5e-29
Identity = 71/226 (31.42%), Postives = 114/226 (50.44%), Query Frame = 0
Query: 83 MPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTLLQSVLNFMPLYLSAVLKVPI 142
MP+ K + + ++E++ ++ WR +LS GRLTL ++VL+ MP++ + + +P
Sbjct: 1 MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60
Query: 143 SVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGGLGLPKFKQMNEALLMKWIWR 202
S+ R++++ R FLW + HL++W V PK EGGLG+ K MN AL+ K WR
Sbjct: 61 SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWR 120
Query: 203 FYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMAIS-NLQDIFWANSRWELRDG 262
E +SLW ++ KY + S S W +I+ L+D+ W DG
Sbjct: 121 LLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDG 180
Query: 263 RRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNTNLWNF 308
++I FW DRW PL + N D + + W+ W+F
Sbjct: 181 QQIRFWTDRWVSGKPLLELDNGERPTDCD-TVVAKDLWIPGRGWDF 225
BLAST of Spg025336 vs. ExPASy Swiss-Prot
Match:
P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 5.0e-09
Identity = 49/219 (22.37%), Postives = 101/219 (46.12%), Query Frame = 0
Query: 10 SIVEDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRVSMIASKW 69
S+ DD++++L++ + +L +IK + SG KIN KS +Q +
Sbjct: 697 SLFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHKSVAFIYTNNNQAEKTVKDSI 756
Query: 70 GCSFQALPISYLGMPL--GGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTLLQ-SV 129
+ + YLG+ L K ++ L ++I ++ W+ S GR+ +++ S+
Sbjct: 757 PFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMSI 816
Query: 130 LNFMPLYLSAV-LKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGGLGL 189
L +A+ +K P+S K +EKI F+W + I +++ GG+ L
Sbjct: 817 LPKAIYNFNAIPIKAPLSYFKDLEKIILHFIW-----NQKKPQIAKTLLSNKNKAGGITL 876
Query: 190 PKFKQMNEALLMKWIWRFY-NEDDSLWCKLINYKYKSLT 224
P + +++++K W ++ N + +W ++ N + T
Sbjct: 877 PDLRLYYKSIVIKTAWYWHKNREVDVWNRIENQEMDPAT 910
BLAST of Spg025336 vs. ExPASy TrEMBL
Match:
A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)
HSP 1 Score: 330.9 bits (847), Expect = 8.1e-87
Identity = 180/541 (33.27%), Postives = 273/541 (50.46%), Query Frame = 0
Query: 4 GSFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRV 63
G+ NL ++ DDIL+F++DD++ + N+ II F+ ASGL INL+KST+S INV R
Sbjct: 3 GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAART 62
Query: 64 SMIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTL 123
IAS+WG S + LPI+YLG+PLGGK + +FW + EKI++K+ +W+++ LSKGG++TL
Sbjct: 63 EQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITL 122
Query: 124 LQSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGG 183
++S L +P Y ++ K P+S CK IEK +R FLW ++ HL+ W +T PK GG
Sbjct: 123 IKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGG 182
Query: 184 LGLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMA 243
LG+ + K N ALL KW+WR+ +ED LW K+IN KY+SL+ G IP + ++SSRSPW +
Sbjct: 183 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 242
Query: 244 ISNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNT 303
I + F + W++++GR FW W ++PL F R F+L+ +K+ + W NT
Sbjct: 243 ICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSFHYPRLFALSTNKDSSIRDMWNNT 302
Query: 304 NL-WNFFPRRPLLDRENSVWADFTASLPKLDLSNG------------------------- 363
+ W+ PRR L + E +WA+ SL NG
Sbjct: 303 LMDWDLNPRRQLREWEYPLWAELKNSLNASFCENGKDSPTWTLNSNGLYTVASVKKALQQ 362
Query: 364 ------------------------------------------------------------ 423
Sbjct: 363 PDQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVM 422
Query: 424 ------------------------ISSAIPLHAGC-----LCEEFLAKKALSQRDTIILN 429
ISS + + C LC + K ++++ I+ N
Sbjct: 423 CKRNDEDRIHLFILCPIAKSIWRLISSHLNSNVNCLSPKDLCITMCSWKQKTKKNVILYN 482
BLAST of Spg025336 vs. ExPASy TrEMBL
Match:
A0A1S4E2K5 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC107991687 PE=4 SV=1)
HSP 1 Score: 327.4 bits (838), Expect = 8.9e-86
Identity = 178/541 (32.90%), Postives = 273/541 (50.46%), Query Frame = 0
Query: 4 GSFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRV 63
G+ NL ++ DDIL+F++DD++ + N+ II F+ ASGL INL+KST+S INV R
Sbjct: 516 GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDASRT 575
Query: 64 SMIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTL 123
IAS+WG S + LPI+YLG+PLGGK + +FW + EKI++K+ +W+++ LSKGG++TL
Sbjct: 576 EQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITL 635
Query: 124 LQSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGG 183
++S L +P Y ++ KVP+S CK IEK +R FLW ++ HL+ W +T K +GG
Sbjct: 636 IKSSLASLPTYQLSIFKVPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSSKEKGG 695
Query: 184 LGLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMA 243
LG+ + K N ALL KW+WR+ +ED LW K+IN KY+SL+ G IP + ++SSRSPW +
Sbjct: 696 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 755
Query: 244 ISNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNT 303
I + F + W++++GR FW W ++PL R ++L+ +K + W NT
Sbjct: 756 ICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNT 815
Query: 304 NL-WNFFPRRPLLDRENSVWADFTASLPKLDLSNG------------------------- 363
+ W+ PRR L + E+ +WA+ SL NG
Sbjct: 816 LMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGNDSPMWTLNSNGLYTVASVKKTLQQ 875
Query: 364 ------------------------------------------------------------ 423
Sbjct: 876 PEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVM 935
Query: 424 ------------------------ISSAIPLHAGC-----LCEEFLAKKALSQRDTIILN 429
ISS + + C LC + K ++++ I+ N
Sbjct: 936 CKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCLSPKELCITMCSWKQKTKKNVILFN 995
BLAST of Spg025336 vs. ExPASy TrEMBL
Match:
A0A5D3DM72 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002870 PE=4 SV=1)
HSP 1 Score: 325.9 bits (834), Expect = 2.6e-85
Identity = 177/541 (32.72%), Postives = 272/541 (50.28%), Query Frame = 0
Query: 4 GSFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRV 63
G+ NL ++ DDIL+F++DD++ + N+ II F+ ASGL INL+KST+S INV R
Sbjct: 516 GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDASRT 575
Query: 64 SMIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTL 123
IAS+WG S + LPI+YLG+PLGGK + +FW + EKI++K+ +W+++ LSKGG++TL
Sbjct: 576 EQIASQWGISTKFLPINYLGVPLGGKQITKTFWKNVEEKINKKLASWKYSMLSKGGKITL 635
Query: 124 LQSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGG 183
++S L +P Y ++ K P+S CK IEK +R FLW ++ HL+ W +T K +GG
Sbjct: 636 IKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSSKEKGG 695
Query: 184 LGLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMA 243
LG+ + K N ALL KW+WR+ +ED LW K+IN KY+SL+ G IP + ++SSRSPW +
Sbjct: 696 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 755
Query: 244 ISNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNT 303
I + F + W++++GR FW W ++PL R ++L+ +K + W NT
Sbjct: 756 ICKGLEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNT 815
Query: 304 NL-WNFFPRRPLLDRENSVWADFTASLPKLDLSNG------------------------- 363
+ W+ PRR L + E+ +WA+ SL NG
Sbjct: 816 LMDWDLNPRRQLREWEHPLWAELKNSLNASFCENGNDSPMWTLNSNGLYTVASVKKTLQQ 875
Query: 364 ------------------------------------------------------------ 423
Sbjct: 876 PEQNLLDFQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPNLCSRPSWCVM 935
Query: 424 ------------------------ISSAIPLHAGC-----LCEEFLAKKALSQRDTIILN 429
ISS + + C LC + K ++++ I+ N
Sbjct: 936 CKRNDEDRIHLFILCPIAKSIWRSISSHLSSNVNCLSPKELCITMCSWKQKTKKNVILFN 995
BLAST of Spg025336 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 325.9 bits (834), Expect = 2.6e-85
Identity = 185/541 (34.20%), Postives = 258/541 (47.69%), Query Frame = 0
Query: 5 SFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRVS 64
+ NL I+ DDILIF++D ++ + N+ I+ FE ASGL INLSKST+ INV R +
Sbjct: 497 NLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAN 556
Query: 65 MIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTLL 124
I WG S LP +YLGMPLGGKP SS+FWD +++KI +K+ +W+++ LSKGGR+TL+
Sbjct: 557 SIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLI 616
Query: 125 QSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGGL 184
S L +P+Y +V KVP + ++IE +R FLW+G + LIRW+ V PK +GGL
Sbjct: 617 NSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGL 676
Query: 185 GLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMAI 244
G+ N ALL KW+W+F E + LW +LI KY G PS KY+S+ SPW A+
Sbjct: 677 GIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAV 736
Query: 245 SNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNTN 304
+N F+ N W++ DG I FW D W G++PL V R F+L+ +K V+ W N +
Sbjct: 737 TNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLW-NPS 796
Query: 305 L--WNFFPRRPLLDRENSVWADFTASLP--------------------------KLDLSN 364
L WN RPL D E ++W + ASLP K DLS
Sbjct: 797 LKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSE 856
Query: 365 GISSAIPLHA------------------------GC------------------------ 424
+S H GC
Sbjct: 857 ASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMC 916
Query: 425 ---------------------------------------LCEEFLAKKALSQRDTIILNI 430
L + + +Q+ I N
Sbjct: 917 NKSQEDINHLFIHCPYSQQLWSKAQALLKWNSTPNDVKSLAQNICSLNIKTQKGLITFNT 976
BLAST of Spg025336 vs. ExPASy TrEMBL
Match:
A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)
HSP 1 Score: 323.9 bits (829), Expect = 9.9e-85
Identity = 178/541 (32.90%), Postives = 273/541 (50.46%), Query Frame = 0
Query: 4 GSFNLPSIV-EDDILIFLQDDDNVLDNMLYIIKSFEQASGLKINLSKSTVSGINVTDQRV 63
G+ NL ++ DDIL+F++DD++ + N+ II F+ ASGL INL+KST+S INV R
Sbjct: 579 GNINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDASRT 638
Query: 64 SMIASKWGCSFQALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTL 123
IAS+WG S + LPI+YLG+PLGGK + +FW + EKI++K+ +W+++ LSKGG++TL
Sbjct: 639 EQIASQWGISTKFLPINYLGVPLGGKQTTKAFWKNVEEKINKKLASWKYSMLSKGGKITL 698
Query: 124 LQSVLNFMPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGG 183
++S L +P Y ++ K P+S CK IEK +R FLW ++ HL+ W +T K +GG
Sbjct: 699 IKSSLASLPTYQLSIFKAPVSTCKNIEKTWRNFLWKNPPETHKLHLVNWAKITSSKEKGG 758
Query: 184 LGLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMA 243
LG+ + K N ALL KW+WR+ +ED LW K+IN KY+SL+ G IP + ++SSRSPW +
Sbjct: 759 LGISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFS 818
Query: 244 ISNLQDIFWANSRWELRDGRRILFWFDRWTGSAPLRFVGNRFFSLAADKNICVEKAWMNT 303
I + F + W++++GR FW W ++PL R ++L+ +K + W NT
Sbjct: 819 ICKGLEWFQRHVSWKIKNGRSFSFWHGHWHQNSPLSSHYPRLYALSTNKESSIRDMWNNT 878
Query: 304 NL-WNFFPRRPLLDRENSVWADFTAS---------------------------------- 363
+ W+ PRR L + E +WA+ S
Sbjct: 879 LMDWDLNPRRQLREWELPLWAELKNSINASFCENGKDSPMWALNSNGLYTVASVKKALQQ 938
Query: 364 -----------------------------------------------LPKL--------- 423
LPKL
Sbjct: 939 PEQSLLDLQSQNTFKNLWKTSIPKKCIFFIWTLLYDSVNTAEQLMKRLPKLCSRPSWCVM 998
Query: 424 -------------------DLSNGISSAIPLHAGC-----LCEEFLAKKALSQRDTIILN 429
+ ISS + + C LC + K ++++ I+ N
Sbjct: 999 CKRNDEDRIHLFILCPIAKSIWRTISSHLNSNVNCLSPKELCITMCSWKQKTKKNVILFN 1058
BLAST of Spg025336 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 96.7 bits (239), Expect = 4.9e-20
Identity = 58/207 (28.02%), Postives = 94/207 (45.41%), Query Frame = 0
Query: 75 ALPISYLGMPLGGKPRSSSFWDPLVEKIHRKIDNWRFASLSKGGRLTLLQSVLNFMPLYL 134
ALP+ YLG+PL K ++S + PLVEKI +I W LS GRL L+ SV++ + +
Sbjct: 22 ALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFW 81
Query: 135 SAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGGLGLPKFKQMNE- 194
+ ++P + K I+ I FLW G + ++ + W V PK EGGLG+ K+ N+
Sbjct: 82 MSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKG 141
Query: 195 --------ALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKYASSRSPWMAISN 254
L W+W+ K++ K+++L G +
Sbjct: 142 SFWSISGNTTLGSWMWK----------KIL--KHRALASGFV------------------ 189
Query: 255 LQDIFWANSRWELRDGRRILFWFDRWT 273
+ ++ +G FWFD W+
Sbjct: 202 ---------KHDIHNGSNTSFWFDNWS 189
BLAST of Spg025336 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 74.3 bits (181), Expect = 2.6e-13
Identity = 43/148 (29.05%), Postives = 69/148 (46.62%), Query Frame = 0
Query: 130 MPLYLSAVLKVPISVCKRIEKIFRKFLWDGIDKSSSSHLIRWDMVTMPKSEGGLGLPKFK 189
+P Y A +P +VCK+I + F W ++ H WD ++ K+EGG+G +
Sbjct: 3 LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62
Query: 190 QMNEALLMKWIWRFYNEDDSLWCKLINYKY-KSLTPGSIPSISKYASSRSPWMAISNLQD 249
N ALL K +WR + +SL K+ +Y P + P S+ W +I Q+
Sbjct: 63 AFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSR---PSFVWKSIHASQE 122
Query: 250 IFWANSRWELRDGRRILFWFDRWTGSAP 277
I +R + +G I+ W +W S P
Sbjct: 123 ILRQGARAVVGNGEDIIIWRHKWLDSKP 147
BLAST of Spg025336 vs. TAIR 10
Match:
AT3G25720.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 59.3 bits (142), Expect = 8.7e-09
Identity = 35/110 (31.82%), Postives = 53/110 (48.18%), Query Frame = 0
Query: 174 VTMPKSEGGLGLPKFKQMNEALLMKWIWRFYNEDDSLWCKLINYKYKSLTPGSIPSISKY 233
V +PK+EGGLGL F + N L +K +WR ++ SLW ++Y L S+SK+
Sbjct: 18 VCLPKAEGGLGLRWFSEWNTTLNLKLVWRLFSGGGSLWVDW--HRYHHLQGLGDASVSKF 77
Query: 234 ASSRS------PWMAISNLQDIFWANSRWELRDGRRILFWFDRWTGSAPL 278
+S+ W + L+ + R + +G FW D WT PL
Sbjct: 78 WTSQELVSDSWNWKCLLRLRPLAERFLRCNIGNGLTARFWTDNWTPFGPL 125
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0040037.1 | 1.7e-86 | 33.27 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
XP_016902461.1 | 1.8e-85 | 32.90 | PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo] | [more] |
KAA0041397.1 | 5.4e-85 | 34.20 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039770.1 | 5.4e-85 | 32.72 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247... | [more] |
TYK06777.1 | 2.0e-84 | 32.90 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
P0C2F6 | 1.5e-29 | 31.42 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
P08548 | 5.0e-09 | 22.37 | LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7TES3 | 8.1e-87 | 33.27 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A1S4E2K5 | 8.9e-86 | 32.90 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo OX=3656 GN=LOC1079... | [more] |
A0A5D3DM72 | 2.6e-85 | 32.72 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TIB8 | 2.6e-85 | 34.20 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3C4J1 | 9.9e-85 | 32.90 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 4.9e-20 | 28.02 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |
AT4G29090.1 | 2.6e-13 | 29.05 | Ribonuclease H-like superfamily protein | [more] |
AT3G25720.1 | 8.7e-09 | 31.82 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |