Spg024920 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024920
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 9526350 .. 9527972 (+)
RNA-Seq ExpressionSpg024920
SyntenySpg024920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCGATAATCATAGCGTGCTACGAAAACGATTTGGCGTAGTGGACGTCTGTCATGTGTTTGTGAAATTTTCTCACCGAGCTTTGATGAACAATGGCGAATTTGATCGGGACAAAATGGAATTCAAGATTGCTGTTGCCAATGGAGTTAATTAATATGTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGTTGGTGCTGCAATATCGGTACACTAGGACTAGGCCTGCTTTATTATCCTTAGCATTGCCGGATCATGTCCGCCATGGAAGCTACACAAACGAACTTCGTGACATTTATCTCCTTGCAGTGTCCAATATCTGGTAGATGTTTCCCGGCATCTCGTCAAAGAGAGGCCAATTCGTCAATGGGAGTTGAAAAGCGAACAGCATTATAGGTTGTGGTTGAGAAACAGCAACTGTGAGATTGATTGGTAACTTGTTTTATGTTGGCGCTAAAGAAAATTTCTTATCGACTTTTCATTTCTCTGTCTGTAATTTTCTTACAGGGGCCAGAAAATTCACTTTTCCACGATGCAATTCAGATTTAGGCAGCCAATATACAGATATTCGATGTGAGTTAAATCTACACGTGTTAATGGATAAATAATTTTATGCATATTTTTCGTGCTTTTTTGCTCCTACTACTGAGGTTGCTGCTTCGAATTAGAAAGCAAATTTGTTCTTATGGTTATGGAGATTCCATATTACTCATTCGGCTGCATGACAGTGGTTTTCAGGTCGTTTCATTACTATACCATCGTCGTCGCGGAAATGGAGTTGGATTGGTAATGTAGAATCTTGCCTTTCCATGGTGGTCCATATTGTAAAGTATGCGCGCCACTACTGTTGCACACTAGGTGTTTGATGTAATGTCTCTGCATAAATTGGTTACCTCTCCATAATTCTTTCCCTTTTTTTAATTTGAAAAGTCTCACCTAATCATTTCTAGGCATAAAATTGGATTATCTCTCAACTAGCCGAATGGTAATCTCTATTGTAAATAATAGGTTCGAATCTTGTTTGAATTATATTACTCTTAAAGCAAACGTTGTCTCTACTCTGCATCACACACCACACATGTTTTGGTTTCCTATGATAAAATTACTTCAAAAGTTGAAGTACTAAAGTCAAAATCAGACCAAAATTTTACTTTTTGTTACAACTCAACATCTTATCTTAACCACCGATTTGCACCCCATGGGGAAGTAAACTGATTTGTACAACTTTTTGAATTCTGTTTTGCAAAGAAATCTATACATTTTAGTCCTTTAATGATTAAAAGTTATTATTAAATGAAACTGTTAGTCAAGCGTGCTTTCTGTTGGCAGAAATGTTGGACTAAAACTCCGTTGGCACAGGTTCAGCCCCTGGAAATTAGTTTGAAGGGTCAGCAATCGGAGGACATAAAGGCACTGATCTTGAACGACAATTCATTAAATTAAGTCTAAAGAGTCTGCAGAAGAGGCATAAAAGCCATGCTGTTCTCTAATTGTTTGACATTATTTTGCTGCCTTTCTTGCACACAGGGAAGGAAGCTGGATTCAACCGTTTAATTACTTTTGCCCGTTTGAGTTTGAAACAAGAGGAATACCATACCCCAGAAATGGATGAC

mRNA sequence

ATGGCGACCGATAATCATAGCGTGCTACGAAAACGATTTGGCGTAGTGGACTGTCCAATATCTGGGGCCAGAAAATTCACTTTTCCACGATGCAATTCAGATTTAGGCAGCCAATATACAGATATTCGATGTCGTTTCATTACTATACCATCGTCGTCGCGGAAATGGAGTTGGATTGGGAAGGAAGCTGGATTCAACCGTTTAATTACTTTTGCCCGTTTGAGTTTGAAACAAGAGGAATACCATACCCCAGAAATGGATGAC

Coding sequence (CDS)

ATGGCGACCGATAATCATAGCGTGCTACGAAAACGATTTGGCGTAGTGGACTGTCCAATATCTGGGGCCAGAAAATTCACTTTTCCACGATGCAATTCAGATTTAGGCAGCCAATATACAGATATTCGATGTCGTTTCATTACTATACCATCGTCGTCGCGGAAATGGAGTTGGATTGGGAAGGAAGCTGGATTCAACCGTTTAATTACTTTTGCCCGTTTGAGTTTGAAACAAGAGGAATACCATACCCCAGAAATGGATGAC

Protein sequence

MATDNHSVLRKRFGVVDCPISGARKFTFPRCNSDLGSQYTDIRCRFITIPSSSRKWSWIGKEAGFNRLITFARLSLKQEEYHTPEMDD
Homology
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BLAST of Spg024920 vs. NCBI nr
Match: KAG7026320.1 (hypothetical protein SDJN02_12821, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-06
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 0 

Query: 46 FITIPSSSRKWSWIGKEAGFNRLITFARLSLKQEEYHTPEMDD 89
          FI +   +     IGKEAGFN LITFARLSLKQEE HTPEMDD
Sbjct: 43 FIGVEKQTETLGLIGKEAGFNVLITFARLSLKQEECHTPEMDD 85

The following BLAST results are available for this feature:
BLAST of Spg024920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026320.13.0e-0669.77hypothetical protein SDJN02_12821, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Spg024920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024920 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024920.1Spg024920.1mRNA