Spg024411 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024411
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold9: 23893140 .. 23900611 (+)
RNA-Seq ExpressionSpg024411
SyntenySpg024411
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCAGTTTCTAACAAATTTCATGAAGGAAGCTTGACCTAATTCGTATGAGAAGTAGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTTTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAATCTTATTCAATTATCTACAACTTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTTATTAATTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAGAGTAGAGTGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAAGTGACAAAATGAATTTCGAAAAGGTTCTTAAACGGTTGTTCATGATTATATGTTTTACATGCTTTCCTATGAATGATACATGGTTTTTATGAACGGTTTCAAGCATGAGTTTTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGCAAAGTATGGATTAGCAAGTACTTCTAAATGATTTTCGGTTTTCCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTCTGATATACTTGATATGCCTTGCTAGATTCTTAATGACGGACTTGCGAAATGTTTGAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGACTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCAAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAGTGTTTACCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTAGTATGTTTATCAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGAGCTTCTAAAAAAAATATTGCTCAACACATTGCTCCCTCAAAACCTTCGCTCGCTCATTCTTCAACCAATCCCAGAGAGGGATATTTCGAATGAAATTTCTCTCCCTAGTAATGCTTCACTCGCTGACCATTAACTTTAAACACTCGCCCATCTCTTTCATCTCTCAGAGTAATTGCTCCATGAGGAAAAACTTCAATCACAATAAATGGTCCAGACCATTTGGATTTTAATTTTCCTGGAAACAAATTTAATCTAGAGTTATATAACAAGACCTGCTGACCCTTTACAAATTCCTTAGGTTTTAACTTCTTATCATGCCACCTCTTTGTTTTCTCTTTATACATTTTCAAATTTTCGTAAGAAAACTGACGAAACTCCTCGAACTCATTAAGCCGTAGCATTCTAATTGCTCCTGCATTACGCAAATCAAAATTCAACTTTTTCAGAGCCCAAACTGTCTTATGCTCAACAGTAAATGGCAATCCTTTCCATACACTAACCTATAGGGAGACATACCTAATGGAGTCTTAAAAGCTGTCCTATAAGCCCAAAGAGCTTCATCTAACCGAAAAAAACAATCTTATCTAGATGGATGGACTACCTTCTCTAATATAGATTTAATTTCCATATTACTAACTTCAGCCTGACCATTTGCTTGTGGGTGGTATGGGGTAGTTATCCTATGCTTAACTCCATACTTAGCTAAAAGCTTAGCTAATACATTATTCACAAAGTGTTTACCCTCGTTGCTCACAAGAGCCCTAAGTGTCCCAAACCGCGCAAAAATGTGCGATTGAAGAAACCTTGACACCGTCTTAGCATCGCTTTGATGGCATGCAATAGCCTCCACCCACTTGGACACATAGTCAACTGCCAAGAAAATAAACACATTACCGTTAGAAGGGGAAATGACCCCATAAAATCGATACCTCATACATCGAATAATTCTAATTCTAAAACATAAGTAAGAGGCATTTCATCTCTAGGTCCTAAATTTCTTCTCCTTTGGCAAGTATCACATTGTTTGCAAAACCAGTAGGCATCCTTAAATAAAGAAAGCCAGAAAAATCCACATTGTAAAATCCTCATTGCTGTCTTCTGACCGCTGAAATGACCCTCATACGGAGAAGAGTGACATTGCTCCAGGATTTCCTTTGCTTCATCACCTGAAACACATCTCCGAATAATACCATCAGAACATTGTTTATACATAAATGGCTCATCCCAGTAAAAAAAACTTTGCATCATGCCGAAATTTTTTCATTTGCCTCCTATCCATATCAGTAGGAGTGACTCCACTTACCAGAAAATTAGCTACATCTGCATACCAAGGAATACTATGCACTACCTTTACATCAACAATAAAGAGCTGCTCATCTGGAAATGAATCTGAGATGACAGATTGCTCGAGCAAAGATGATGATGGATCAAGACGGGAAAAATGATCTACAATAACATTTTCCGATCCCTTCTTGTCCTTTATCTCTAAGTCGAACTCCTGCAATAACAAAACCCAACGAATTAATCGAGGTTTCGCATCTTTCTTTGACATTAAGTACCTTATTGTTGCATGATTTGTAAACACCGTGACTTTGGATCCTACTAAATATGAGCAGAATTTCTCAATGGCAAACACAATTGCTAACAACTCCTTCTCAGTAGTTGTATAGTTGATTTGTGCCTCATTCAAAACTCTGCTTGCATAATAAATAGGATGGATAACTTTTCCCTGCTTATGCCCCAGCATTGCATCTACTGCCACATCGCTAGCATCACACATCACCTCGAACGACAAACTCCAGTTTGGTGCACAAAGAATCGGCGTTGAAATCAAAGTAGATTTTAAAGTCTCAAAAGCCTTCCTACAATCTGCATCAAAATAAAAAACACTATCAACACACAACAATTTGCAAAGAGGTTTACTAATGTTAGAGAAATCTTTTATGAACCTTCTATAAAATCCAGCATGACCTAAAAAGCTACGAATCCCTTTAACTGAATTCGGTGGTTCTAACCTCTCAATAACCTCTATTTTTGCTCGATCAACTTCTAGACCTCTCTTTGAAATTTTATGACCTAACACTATGCCCTCTTTCACCATGAAGTGGCATTTCTCCCAATTAAGAACTAGATGGGTACTCTCACATCTTTTTAGCACCTTACCTAAATTATTCAAACATTGCTGAAAAGACCCTCCAAAAACTGAAAAATCGTCCATAAATACCTCAACAGTGGACTCAATCATATCAGAAAAAATAGTTAACATACACAGCTGAAATGTTGTTGGAGCATTGCAAAGACTGAAAGGCATTCGCCTAAAAGCAAATGTCCCATACGAGCAGGTGAACGTTGTTTTTTCCTGGTCCTCAGGAGCTATGGTAATTTGGTTATACCCAGAATAACCATCCAAGAAACAGTAGTAAGCCTGACCAGCTAACCTATCCAACATCTGGTCAATAAATGGTAGAGGAAATGGTCCTTATGGGTAGCTTTGTTAAGCCTCCTATAATCCATACAAACCCTCCAACCAGTTACTGTCCTGGTGGGGATCAATTCATTATCCTTATTAGTCACTACCTTAACACCTTCTTTCTTAGAAACACACTGGACAAGGCTTACCCAATTGCTATCTGCAATTGGATAAATAATCCCAGCATCCAACCATTTAATCACCTCCTTTTTAACAACTTCTTTCATTGTAGGGTTAAGCCTTCTCTGTTGCTCAATACTCCTAAAAGATCCCTCCTCTAGAGTGATTTTATGCATACAGAAAGATGGCCTAATTCCCTGAATATCAGCTAATGTCCAACATATTGCCTTGCGGTATTGCTGCATCAACTTAACTAAGGCCTCTTCATCCTCTAGCACTAAATTTGATGCATCAATAATGGGCAACGTCTCACCCTCCCCAAGATACGCAAACTTTAGATGATCCGATAAAGGCTTCAAATCTAAAGTAGGTGCTTAAATCAGGGATGGCTTAATAGGAGGAGCCTTCCTTTCATTCAAATCTAATGACTCAAAAACACTTTCTAACCTAGACACTTCTTTTTTCATTTTTCCTCTCTAAAGTACAAACTGCTAAATCCTCTATACTAATCTCTCCATAATCCTCAAAATGTTGATCCGTCAAATCCTCTATTGTTGTCTCAACAATTGTGTTCTCCAGAAGCCGAATGAAAGAGCAATCTTCCACTTCATCTGGATACTTCATGGCTTTAAAAACATTAAACTTCGCTTTCTCATTATGAACCCTCATCATTAATTCCCCTTTCTGAACATCTATCAATGCCCTACCAGTAGGCAAAAATGAGCAACCAAGAATAATTTGGACATCTTTATCTGCCTCATAATCTAAGATAATAAAATCAGCAGGAAATATAAATTTATCTGCTTTAACTAAGATAATAAATTTATCATAAACTAAGATAGTTGGAGTGTGATTGTGGTAGGTCTTGCTTCACCAATACCTAGCTTTCGATAGACTGAAAGAGGCATAGGATCAATGCTCGCGCATAAATCACAAAGTGTTCTCCCCAACTCTTTTCCACCTATAGAGACAGAAATAGTAAATGACACTGGATCCTTAGCCTTGGTTGGCAGCTCATTCTTAAGAATAGCACTACCTTCCTCAGTAAGAGATACAATTTCAAATTCTCCTAACCTCTTCTTTTTAGTCAAGATATCCTTAAGAAATTTTTCATAATTTGGCATTTGCTCTATAGCCTCTACTAAAGGGATATTAATATGCAATTGCTTAAGAATATCTAAAAGCTTTTTAAACTGACCATCCTGGTTCTTAGGCTTCCGCCTTTGTGGAAAAGGTAGAGGTGGCACATAAGGTGGGGGCGGTACATAAGGTGGTTCTACATCTGGAACAGAACTAGATGCTTCAACATTATTTTTATTGCTGCCTCCATCATTTTTACCAAACTCCAACTCTTTCTCAACATCAACATTTTTATCACTACTCTTTTCTACATCCTGGGGTTTACTAGGCTCTCTTTTCTCTTCTAGTGGCTTACTACTCCTTAGAGTCACCGTCTGCACCTGCTCCTTACTTTCCCTTCTAGGGTGTTCAGTATCCGAAGGAAGTCTCCCTTGAGGCCGTGCCTTCAGCTCATTAACTAGCTTACCCATTTGAAATTCCAGGGCTCTCAATGAAGCCTGATTACTTTGAACTGCGACATCATTACGAGCCATATATTATTTCATCAATGACTCCAAAGAACTCTCTGAATTTTGCTGGGGCTTTACCTGTTGATTTTGCTGGGGCATTACCTGCTGTTAAGCAAATCCTGACTGGTTCGCCACCTTTTGTTGTGCTTGGCGGGCTTGCGAATTGCTTCCTTGCTCTCCCCATGCAAAGTTAGGGTGGTTACGCCAACCTGGATTGTAAAAATTCGAATATGGGTTACTCCTTTGATTACCTACAAAAAACACCGAAGTTGGATTGTTGGGGCAAAACTCATAATAATGCTCTTCACCACAATAGACACATGATTCGGTTGTCACTTGGTTTACAACTGCAGCAGGCTCCACCACTGGCGGCTGCTTAACATTGCTCACCATAGTTATGCCTTTAAGAGCGTTAGCTAATGTTGCTATATCAGCCTTAATGGTAGACACACCATCAACTTCTATTACACTCCTCACTTTTTTACTAGAGCCTCTAACATCTGACCATTGACAACTATTGGTTGATATTATTCTAAAATCTCATGGGCTTTATTAAAGGTTTTTGCCAAAAGGGCCCCTCCCGCAGAAGCATCGACCATACCCTAGGTTGCTATGTTTAACCCATTGTAAAATTTTTCCATTTGGATACAATATGGTAAACCGTGGAAGGGACACTTTTGCAAAAGCTCCTTAAACCTCTCCCAAGCCTCACTAAAAGTTTCATCCTCAATTTGCCTAAATCTCATTATTTCACTCCTTAACTTGGCATTCCTAGTTGGTGGAAAATACTTACTAAGAAAATTTTCCCCTAACTCATTCTAAGTACTAACTGATCCTGGAGTAAAAGAATTCAACCACGCCTTTGCTCCATCTCTAAGAGAATACGGGAACAAAGTCAATCTAAGGGCATCTCTCGACACTCCCTGAATAACAAACGAATCACTAACTCCTAGAAAAGACTTAAGATGTAAATGGGGGTCCTCAGATGGTAAACCATGGAATTGACTCACGATCTGCAATTGATAAGGGTAAAAAATATACCTATTTTACCCTTATATCTATCTCATTTTCTTATCAAAGTTGCATGTTTTAGATCAAATTTACTACTCTCGAGCTCTAAAAGTGTTAAAGTTGATGAATTAGGGAGTTGAGAGTCACATATGTCAAATTATGCTTAAAAGTGCTTAAAAAAACCTATTTTGATATGAATTTGACTTAATTTGGTGTTATGCAGAAAAGCAGAGAAAGCTGGAATTTCCCAGAAATGCGACCGCATTTCTGGGCAGACAGAGGCAGTTGCGAGTCTGCCGCGGGTCATTTTGA

mRNA sequence

ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAAAAGCAGAGAAAGCTGGAATTTCCCAGAAATGCGACCGCATTTCTGGGCAGACAGAGGCAGTTGCGAGTCTGCCGCGGGTCATTTTGA

Coding sequence (CDS)

ATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTTACTTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTCAACGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGAAAAGCAGAGAAAGCTGGAATTTCCCAGAAATGCGACCGCATTTCTGGGCAGACAGAGGCAGTTGCGAGTCTGCCGCGGGTCATTTTGA

Protein sequence

MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGEKQRKLEFPRNATAFLGRQRQLRVCRGSF
Homology
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BLAST of Spg024411 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 3.9e-33
Identity = 102/182 (56.04%), Postives = 105/182 (57.69%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSI----------- 60
           MQSQPLQ+L +T                 STGFSSK GG LV SD LSI           
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLY 60

Query: 61  LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS---- 120
           LGPRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SS    
Sbjct: 61  LGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLE 120

Query: 121 ------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP 128
                        F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGP
Sbjct: 121 LYFESVHVEMFCSFTNQVMSELHLV----FNVSVGSTGIVRGDDVCWLHAVFRAKTVGGP 178

[Close]
BLAST of Spg024411 vs. NCBI nr
Match: KAA0064296.1 (putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01032.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 3.3e-32
Identity = 98/176 (55.68%), Postives = 103/176 (58.52%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSIL---------- 60
           MQS PL++L +T                 STGFSSK G  LVFSD LSIL          
Sbjct: 485 MQSLPLENLGATVNLWFVLFGLSYQEGTKSTGFSSKPGRFLVFSDALSILKVPKSNQKLY 544

Query: 61  ---------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES 120
                     PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES
Sbjct: 545 LDIESGKSGKPRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAES 604

Query: 121 SRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 128
             S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGG
Sbjct: 605 YGSNSSYFTNQVMSGLHLV----FNVSVGSTGIVRGDDVCCLHVVFRAKTAGGPGG 656

[Close]
BLAST of Spg024411 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 9.5e-32
Identity = 100/183 (54.64%), Postives = 105/183 (57.38%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP--------------------- 60
           MQSQPLQ+L +T   L TGFSSK GG LVFSD LSIL                       
Sbjct: 1   MQSQPLQNLGATGN-LWTGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDV 60

Query: 61  --RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS--- 120
             RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS   
Sbjct: 61  MLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWL 120

Query: 121 -------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGG 128
                        YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GG
Sbjct: 121 ELYFESVHVEMFCYFTNQVMSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTVGG 178

[Close]
BLAST of Spg024411 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 9.5e-32
Identity = 100/183 (54.64%), Postives = 105/183 (57.38%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP--------------------- 60
           MQSQPLQ+L +T   L TGFSSK GG LVFSD LSIL                       
Sbjct: 1   MQSQPLQNLGATGN-LWTGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDV 60

Query: 61  --RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS--- 120
             RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS   
Sbjct: 61  MLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWL 120

Query: 121 -------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGG 128
                        YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GG
Sbjct: 121 ELYFESVHVEMFCYFTNQVMSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTVGG 178

[Close]
BLAST of Spg024411 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-29
Identity = 100/197 (50.76%), Postives = 103/197 (52.28%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSILG--------- 60
           MQSQPLQ+L +T                 STGFSSK GG LVFSD LSIL          
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVFSDALSILEIHKSNQKLY 60

Query: 61  -----------------PRGNRSSLQTGELDKT---------------VEIELPVPDTLP 120
                            PRGNR SLQT ELDKT               V IELPVPD LP
Sbjct: 61  LVLEVRISNLENLKSGMPRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILP 120

Query: 121 TSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDV 128
           TSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDV
Sbjct: 121 TSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLV----FNVSVGSTGIVRGDDV 180

[Close]
BLAST of Spg024411 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.9e-33
Identity = 102/182 (56.04%), Postives = 105/182 (57.69%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSI----------- 60
           MQSQPLQ+L +T                 STGFSSK GG LV SD LSI           
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVLSDALSILEIHKLNQKLY 60

Query: 61  LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESSRSSSS---- 120
           LGPRGNR SLQTGELDKTV                IELPVPDTLPTSAESS S+SS    
Sbjct: 61  LGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWLE 120

Query: 121 ------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGP 128
                        F NQVMS LH V    FNVSVGSTGIVRGDDVCWLHAVFRAK  GGP
Sbjct: 121 LYFESVHVEMFCSFTNQVMSELHLV----FNVSVGSTGIVRGDDVCWLHAVFRAKTVGGP 178

[Close]
BLAST of Spg024411 vs. ExPASy TrEMBL
Match: A0A5A7VD33 (Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00370 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 98/176 (55.68%), Postives = 103/176 (58.52%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSIL---------- 60
           MQS PL++L +T                 STGFSSK G  LVFSD LSIL          
Sbjct: 485 MQSLPLENLGATVNLWFVLFGLSYQEGTKSTGFSSKPGRFLVFSDALSILKVPKSNQKLY 544

Query: 61  ---------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAES 120
                     PRGN+ SLQTGELDKT                 VEIEL VPDTLPTSAES
Sbjct: 545 LDIESGKSGKPRGNKPSLQTGELDKTVIFPLSTFSVLHDNDAVVEIELSVPDTLPTSAES 604

Query: 121 SRSSSSYFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGG 128
             S+SSYF NQVMSGLH V    FNVSVGSTGIVRGDDVC LH VFRAK AGGPGG
Sbjct: 605 YGSNSSYFTNQVMSGLHLV----FNVSVGSTGIVRGDDVCCLHVVFRAKTAGGPGG 656

[Close]
BLAST of Spg024411 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.6e-32
Identity = 100/183 (54.64%), Postives = 105/183 (57.38%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP--------------------- 60
           MQSQPLQ+L +T   L TGFSSK GG LVFSD LSIL                       
Sbjct: 1   MQSQPLQNLGATGN-LWTGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDV 60

Query: 61  --RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS--- 120
             RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS   
Sbjct: 61  MLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWL 120

Query: 121 -------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGG 128
                        YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GG
Sbjct: 121 ELYFESVHVEMFCYFTNQVMSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTVGG 178

[Close]
BLAST of Spg024411 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.6e-32
Identity = 100/183 (54.64%), Postives = 105/183 (57.38%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQPLSTGFSSKAGGSLVFSDVLSILGP--------------------- 60
           MQSQPLQ+L +T   L TGFSSK GG LVFSD LSIL                       
Sbjct: 1   MQSQPLQNLGATGN-LWTGFSSKLGGFLVFSDALSILEVHKSNQKLYLDIESGKSGKWDV 60

Query: 61  --RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRSSSS--- 120
             RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAESS S+SS   
Sbjct: 61  MLRGNRSSLQSGELDTTVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWL 120

Query: 121 -------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDVCWLHAVFRAKLAGG 128
                        YF NQVMS LH V    F+V VGSTGIVRGDDVCWLHAVFRAK  GG
Sbjct: 121 ELYFESVHVEMFCYFTNQVMSRLHLV----FSVLVGSTGIVRGDDVCWLHAVFRAKTVGG 178

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BLAST of Spg024411 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.3e-30
Identity = 100/197 (50.76%), Postives = 103/197 (52.28%), Query Frame = 0 

Query: 1   MQSQPLQDLRSTCQ-------------PLSTGFSSKAGGSLVFSDVLSILG--------- 60
           MQSQPLQ+L +T                 STGFSSK GG LVFSD LSIL          
Sbjct: 1   MQSQPLQNLGATVNLWFVLFSLSYPEGTKSTGFSSKPGGFLVFSDALSILEIHKSNQKLY 60

Query: 61  -----------------PRGNRSSLQTGELDKT---------------VEIELPVPDTLP 120
                            PRGNR SLQT ELDKT               V IELPVPD LP
Sbjct: 61  LVLEVRISNLENLKSGMPRGNRLSLQTRELDKTVIFPLSTLSVLRDNNVVIELPVPDILP 120

Query: 121 TSAESSRSSSS----------------YFPNQVMSGLHHVYVERFNVSVGSTGIVRGDDV 128
           TSAESS S+SS                 F NQVMS LH V    FNVSVGSTGIVRGDDV
Sbjct: 121 TSAESSGSNSSTWLELYFESVHVEMFCSFTNQVMSELHLV----FNVSVGSTGIVRGDDV 180

The following BLAST results are available for this feature:
BLAST of Spg024411 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11835.13.9e-3356.04uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
KAA0064296.13.3e-3255.68putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK... [more]
KAA0062409.19.5e-3254.64reverse transcriptase [Cucumis melo var. makuwa][more]
TYK26572.19.5e-3254.64putative Retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058280.11.5e-2950.76uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
BLAST of Spg024411 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024411 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CJX31.9e-3356.04CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7VD331.6e-3255.68Putative DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7V9N34.6e-3254.64Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY74.6e-3254.64Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7UT177.3e-3050.76CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of Spg024411 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024411.1Spg024411.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0016787 hydrolase activity