Spg024346 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024346
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CCHC-type domain-containing protein
Location	scaffold4: 20337565 .. 20341043 (+)
RNA-Seq Expression	Spg024346
Synteny	Spg024346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTAGCGTCGAGACGCCGTGAGGTAGCGTCGAGACGCTACCTCTCGGGTCTAACTTGTTTGGCTGCTTCATTTTTTTGCTCCTTTTTTACTTGCTTTCGAGGTTTGAGTGCACGCTTTGGTCTTTTCACCTCCTCGACATCTCGTGGACTTCAAGTTGGATCAAAACTACATTAATTTCCTCGAATTAACGTCAATTTGGAATATCGGCTCCAAAGAAGCTTTAACACCAAACACCTATAAAATAACACAATTAAGCACAAGGTTAAGCATAAAACTAGCAAGATTAAGACCAAATATATAGGGCCAAATTGGTCCTATCAAATACCCCCAACCTAAACCTTGCTAGTCCTCAAGAAAGCATATAAGGTGAAAGCATATGATTCAATGGTTGCAATTTTATAGACTCCAATCCCAATGCCTAAAATGCCTAAAATATTGCAATCAAGAGGCATGCACATATAGCCCAATAAAGAGACAAAATCAAAAGTTTTCATGAAAATTCTTGCCCATGCTCACACTTAGCCTACCTAGAACCAATTCTTCTAACCCGGGATTGGATTATATAACCCTCAACTTATCTTTCCTCTACACTGGCGCTAGGAACAAGCATTCAAGAAATTTAAACAATCAAGCAAGTAATACGTTACTAGGCGCGTGCAAGTAGAAACAAGTTATATTTTGCATTTAAAGGATGGCACTAGCTTTGACACACCTGTTGTAGGGACCCATAACCCGAGTTTAACCCTTGGTTGGCCTAACAGATCACAACAGGGGTAGTTCTTTTTGCCTTAACATTTTTAAGCGATGTAAGGTGCACACGAGACTAGTCTTTTTCTTATTCTTTCATTTTTTTACTTTTTCAACAAGAATGATTTTTCTTTTAAGCACAATAGACATATTTTCTTTTATCATTCCTAAGCAAGCCATTACAACCCATTAAGTTCTAGATCACTTGATAGCAAATCCCTACACCTATCGAGGTGACAATGGTGCGGTGCTGGTACTGAATGATGGATGTTAGAAAAGATGGTAAATAAAGATAAAGAATAATTCAGCCAACCTAGTGCAAGTATACGCTACCACATGCAGTAATAAAATCTCTGGAAGTATTCCAAAGGTATCGATCCCACAGGGACTAAATAGGAAACACAGATTTGAAGAAGAAACTGCTCAAAGATTGCTTTCAAGAAAGGTAACCAAAGAAATATTTGATGATGGGTTTTGTAAAACAAACAAAATAAACAAGTAAAAAATAACAATGATAAATAAGCGAGGTATTCAATATAGCTTCAACCCCTAAGGCAAATAACTCTAATCATGGCTTATTTAACCAAAGTCTATTCATGCATTGGGTCAGATTTTAACTTCTGTTTGGCCTTGCTCCCAAGAACCGTTATGTAAACCCGAGACCTACCTTGGATTATTTGCTCTTGTCATATATTGAAAGAAGTTGGATTTAGGTTATTGTTGTTGCATTGTTGAAGGAAAGTGGCAAAGTTTTTGGTACAAGATGTCTTTGATAATCTTGGAAATTATTTAGAGAAAAAGGAAACAAAGGGGAAAAAAAAAAAGAAAGAAGAAAAAGAAAAGGAAACAAAAGAAAATGGGAAAAGGAAAAAGGAAAATATAAAAAAAAATGAATGGAAAACAAAAGCATTTTCGGTGCTAGTGTTTTAAAGGCAAACTCCACCACCGACAAGGATTCATTTCAGCCCATTTCCAGCCATTTTTCTCATCCTTTTCCCATCCAATTTACAGAGCATTTCGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGATTGCTAGGGTTTTGAGGTTGAAGAAGAGAGAAAATAGCTCAAGAAAAGGCAACCATGGCAGAATCTGGGTTCAACCTGCCTATCTCTGGTTTTTGATTCAGTTTGAGCTACACAGAAAGAACTAAGAGGTGAGGTCTGGTTTCCTTGAAAGTTAATCCATTTTCTAACAAATTGCATGAAGGAAGCTTGAGCTAATTCTGATGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACGAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCGGGGGTGTACAAGTTGAATCAGAAGCTCAATTTGGTATGGTTGGAAAGCTTATTTAATTTCCTATAACGCTCATGAATAATTTGTGAGCCACAAATTACTAGAAGTAGGTTTAATTTCAGGAGAAAGATAGAGGGTAGCAGAGAAGCTCGAATCTATACTTGTTGTGTTCGGGGGATTTCTGGACAAATCTGTTGGGAATCTCGTTTTCATTCCTTCAAGTAAGGTTTAGAGGATTCCAAAATGAAGAGTTTGATATATAGTTCATTAATTGTGGTTAAATATTGAGAAAGTTATGAGTGTTGGAAGTTAGAGTATAAGATCTGGAAAATCTGGAAAAAAAAAGAATGTGAAGTGTGATTTTAATTATAGTGTTTAGAATTCATGAGCATGGAAAAGACAAGACTACTTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGCCGAGTCTAAAGACCAGGAAACTAGCTAAGACAGTGAGTGACAAAACGAATTTCGAAAATTATTGATAAATTGTTGTTTATGATTAGATGTTTTATATGGTTTTCTATGAATGGTTTCAATCATAAGTTTCGAGCTTAGATTTTCTAATGAAATTTATACGTGAGCACGTGATTGTTGATTTTCTGAAAAGTAGTTGAAACGATATCATTTTAAAGTAAAGTATGTATTAGCAAGTACTGTTTAAAGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAAAGATAAGCATGCATGTTTTAATGTTTTCATGTGGTTTTCTGAGACTTTTATCGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAAGTTATATTCCGTTGTTGACGTTGAGTGTACTCCATGACAACGATGCTGTCGTGAGTGCTGGGCAGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGTGGGCCCCACTACATCGTAAAGCTAGTAAACGTTGGTTGTACTGGGCATGCCCTACACAACGTGGATCTGTCATGTTAGTTAAAATGTTTAATATAAATGATATGTCTTGCTAGATTTTTAATGACATACTTGCGGATTATTTGAGAAAGCTTTTATCGTTACACATTTATGTTTAACGCTTTTATTGAACAAATTTATACATTTAAAGGTTTATCACGTGTTCTGATTTGCGGATTTAAAGTTTTAAATTGAGTCACTCACTGGGCTTCGTAGCTCACTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATTGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGCTCCAAGTCGACTTCCAATACGTGGGTGGAGTTGTACATTGAGTCTTTTGTATTGTAA

mRNA sequence

ATGTTCGTAGCGTCGAGACGCCGTGAGATCACAACAGGGGTAGTTCTTTTTGCCTTAACATTTTTAAGCGATGTAAGAGCACAGAATTTTCGTGCAAACGAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCGGGGGTGTACAAGTTGAATCAGAAGCTCAATTTGTGTTTAGAATTCATGAGCATGGAAAAGACAAGACTACTTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGCCGAGTCTAAAGACCAGGAAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGCTCCAAGTCGACTTCCAATACGTGGGTGGAGTTGTACATTGAGTCTTTTGTATTGTAA

Coding sequence (CDS)

ATGTTCGTAGCGTCGAGACGCCGTGAGATCACAACAGGGGTAGTTCTTTTTGCCTTAACATTTTTAAGCGATGTAAGAGCACAGAATTTTCGTGCAAACGAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCGGGGGTGTACAAGTTGAATCAGAAGCTCAATTTGTGTTTAGAATTCATGAGCATGGAAAAGACAAGACTACTTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGCCGAGTCTAAAGACCAGGAAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTAATACACTGCCAACGTCTGCTGAAAGCTCCAAGTCGACTTCCAATACGTGGGTGGAGTTGTACATTGAGTCTTTTGTATTGTAA

Protein sequence

MFVASRRREITTGVVLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSNARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIESFVL

Homology

[Close]

BLAST of Spg024346 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.1e-12
Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 31  RANEEDLWFSLVFRA--FGG-------VQVESEAQFVFRIHEHGKDKTTYGSNARFWLFD 90
           R+NEE+L  +L  R   F G        QVESEA F   + +  +  TT+      W   
Sbjct: 84  RSNEEELPDTLHLRTSKFQGRNFIRESAQVESEALFGM-VRKLIQYPTTF---MNIW--- 143

Query: 91  RPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES 131
            PRGNRPS +T KL KTVEIELPVP+TLPTSAESS S S+TW+ELY ES
Sbjct: 144 -PRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFES 184

[Close]

BLAST of Spg024346 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 7.1e-12
Identity = 51/117 (43.59%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 14  VVLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGS 73
           +VLF L++L ++R ++ R   +           GG  V S+A  +               
Sbjct: 43  IVLFGLSYLEELRGESTRFLSKS----------GGFLVFSDALSIL-------------- 102

Query: 74  NARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES 131
                    PRGNRP+L T KL KTVEIELPVP+TLPTSAESSKS S+TW+ELY ES
Sbjct: 103 ---------PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFES 126

[Close]

BLAST of Spg024346 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-10
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 81  DRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES 131
           + PRGNRPSL+  KL KTVEIELP+P+TLPTS+ESSKS S+TW+ELY ES
Sbjct: 89  EMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFES 138

[Close]

BLAST of Spg024346 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-10
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 72  GSNARFW--LFD--------RPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSN 131
           G+   FW  LF         RPRGNRPSL+T KL KTVEIELP+P+TLPT AES  S S+
Sbjct: 10  GATVNFWFVLFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSS 69

[Close]

BLAST of Spg024346 vs. NCBI nr
Match: KAA0066795.1 (uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK27942.1 uncharacterized protein E5676_scaffold384G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-10
Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 15  VLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSN 74
           VLF L++L + ++    +               GV V S+A  +  +H+   D+  Y   
Sbjct: 18  VLFGLSYLEETKSTGSSSKP------------AGVLVFSDALSMLEVHK--SDQKLY--- 77

Query: 75  ARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES 131
              W    PRGNRPSL+TR+L KT  IELPVP+TLPTSAESS S S+TW+ELY ES
Sbjct: 78  -LVW----PRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFES 109

[Close]

BLAST of Spg024346 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.5e-12
Identity = 51/117 (43.59%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 14  VVLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGS 73
           +VLF L++L ++R ++ R   +           GG  V S+A  +               
Sbjct: 43  IVLFGLSYLEELRGESTRFLSKS----------GGFLVFSDALSIL-------------- 102

Query: 74  NARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES 131
                    PRGNRP+L T KL KTVEIELPVP+TLPTSAESSKS S+TW+ELY ES
Sbjct: 103 ---------PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFES 126

[Close]

BLAST of Spg024346 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.5e-12
Identity = 57/109 (52.29%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 31  RANEEDLWFSLVFRA--FGG-------VQVESEAQFVFRIHEHGKDKTTYGSNARFWLFD 90
           R+NEE+L  +L  R   F G        QVESEA F   + +  +  TT+      W   
Sbjct: 84  RSNEEELPDTLHLRTSKFQGRNFIRESAQVESEALFGM-VRKLIQYPTTF---MNIW--- 143

Query: 91  RPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES 131
            PRGNRPS +T KL KTVEIELPVP+TLPTSAESS S S+TW+ELY ES
Sbjct: 144 -PRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFES 184

[Close]

BLAST of Spg024346 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.0e-11
Identity = 37/50 (74.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 81  DRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES 131
           + PRGNRPSL+  KL KTVEIELP+P+TLPTS+ESSKS S+TW+ELY ES
Sbjct: 89  EMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFES 138

[Close]

BLAST of Spg024346 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 42/69 (60.87%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 72  GSNARFW--LFD--------RPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSN 131
           G+   FW  LF         RPRGNRPSL+T KL KTVEIELP+P+TLPT AES  S S+
Sbjct: 10  GATVNFWFVLFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSS 69

[Close]

BLAST of Spg024346 vs. ExPASy TrEMBL
Match: A0A5D3DWP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001370 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 51/116 (43.97%), Postives = 67/116 (57.76%), Query Frame = 0


Query: 15  VLFALTFLSDVRAQNFRANEEDLWFSLVFRAFGGVQVESEAQFVFRIHEHGKDKTTYGSN 74
           VLF L++L + ++    +               GV V S+A  +  +H+   D+  Y   
Sbjct: 18  VLFGLSYLEETKSTGSSSKP------------AGVLVFSDALSMLEVHK--SDQKLY--- 77

Query: 75  ARFWLFDRPRGNRPSLKTRKLAKTVEIELPVPNTLPTSAESSKSTSNTWVELYIES 131
              W    PRGNRPSL+TR+L KT  IELPVP+TLPTSAESS S S+TW+ELY ES
Sbjct: 78  -LVW----PRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFES 109

The following BLAST results are available for this feature:

BLAST of Spg024346 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96965.1	7.1e-12	52.29	uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]	[more]
KAA0052218.1	7.1e-12	43.59	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0062263.1	1.0e-10	74.00	hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]	[more]
KAA0040420.1	3.0e-10	60.87	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0066795.1	3.9e-10	43.97	uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Spg024346 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAH6	3.5e-12	43.59	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3BET3	3.5e-12	52.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2F2	5.0e-11	74.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TAS6	1.4e-10	60.87	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3DWP3	1.9e-10	43.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg024346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024346.1	Spg024346.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016740	transferase activity