Spg024345 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGGTTGAGTTTTCCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTTGTGTACATATTCATAAAGGTAAATATGTATCATGGTATGTAGGGGTGCAAAGAACCGAACCGAACCGAACCGTTTCGGTTTGGTTCGGGTTTCATCTTTATATGTGACCGAACCGAACCGAACCGAAAAGTTCGGTTTGGTCCTCGTATAAATTGCCCGAACCGATATTAGGGTTCCGTCAGTCGCATCTTCTTTTTCTCGCTTAAAATTTTCGTTCCTCACATCGTAATTGCAGACTCGCAGCTTTGCTCGTGCTTGCCGCCGTCTTCGGAGCTTCCTCTCCTCTCGTGCTCGTTCTTGTTGTGGCATCTTCTTCATGCTCGTTCTTGTTGTGGCATCTTCTTCGTGCTCGAAGCTGAACAAGCTTTCTGGGTTTTGGTTTTCTGAACAAGCTGAACACCTTCTTCGTGCTTGCCGCCGTCTTCAAAGTTTCCTCTCCTCTCAAACTTTGATTGTTGATTTTGGTAATTTCTTTCTCATGTTTCATTTTCATTGTTGATTCCATGGACCCTTTTCTTTTCCTTCTATTCCTTCTATTTTTAGCGATGACCTAATCCTTGGTGTTTCGTTGTTTCGTTGGGGATTCTTCGAGTTTCATTGTTTCTCTTCTTGAGTTGATCTCGTTGGTTGCTTTCTACTTAGTTCAGAAACGAGGGTTTCTGTGGATTTCTCTGTGCATTTTCTTAATAGTCAATACTCTTTTGATCAGTGGTTGGATTGTTTTGTTTTGATTCTACAGCTGTTAGTTCGATGTTTAGTAAGTGTGTTTTTGGGTTGTTTTGATTGCTCTGTTTTCGAAAGGTTTGTTGTTTGGTTTTGTCTCGTCTGCTGTGGAAACTGTAGTATAGTGATTTGTAAGTCATTTTGGGTGAATAACACTCCCTTGAATTTTAGATTTATTTGGTGAAGAAATCCAAATGCTTTTCTTACATATTGTAGGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGTGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGGAGTCGATGGAAGCGTGCTATTCAAGTATGAATAAGTTCAGTTTTACTTATTATCGTTTTGGCCTTTAGTTTGTTGGTACCTCGCTCATAATGTGCCAATGTGGTTCCAATCTGTATATGAGCTGATGGCCTATTGTCATTATGGATTCTTTTTGATAGACATTCTAGGTTTTGATTCTAAACTATGCGGTGATGCCTATTATGATTTCATCTTGTGTTCTTGTTGCTTTTACTTTGCTTATTGTTTGGTCAATAACATAATCATGTGCTAGCTTTTTATTGTAATGTGGCATTTATTTGATTAGTTATGTTTTTTTTTTTCAGCTTTTATGCTGAAGTGAAGAAACCTGTGACAAGTTAAATTCTGTGTAAAATTGTAAATGATAGTTTGTGTGGCTTTTCGTTATCTTTTAGATTAGAATGGAAAATAAAGTTCATGTGGCTTGCTTTCCAAGGATGCTTGTTTTCTTCATTTAAATTTATTTGATCTTGAACTAGAAGTTATTGACCATATTGAATTTTGTTAAAACTTGGTTCTTTCTTTTGACAATTGAGATGCTGTCATGTTGGGTTAAAGAAATTTCTTTACATTTATATGGTTTCTATACAGTTAGTTGGGGAGTTGATTGGGATTAAATTAACCAATCTGCAGACTGTAGTACTTTTTGTCCTTTGTCTTTCTATGAAAAGATTGGAGGGTGAGAGTGAGATCTGTAAATTCTAATTCCTCTATCTTTTACTTTTAAATTAACAATGGAGCTGAAGTTGTATCGAGAATAAGAAATCAAGCAAGCGACAACTGTTTTTGTTTTAGTCTTTTAGATATGTAATTTAAAGATTGCTACTAAAAACTTTCAGTTGTTTGATGTTATAGGCGTTCGGAGAGTTTAGAGCAAAGACCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGA ATGATGGTTGAGTTTTCCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTTGTGTACATATTCATAAAGGTAAATATGTATCATGGTATACTCGCAGCTTTGCTCGTGCTTGCCGCCGTCTTCGGAGCTTCCTCTCCTCTCGTGCTCGTTCTTGTTGTGGCATCTTCTTCATGCTCGTTCTTGTTGTGGCATCTTCTTCGTGCTCGAAGCTGAACAAGCTTTCTGGGTTTTGGTTTTCTGAACAAGCTGAACACCTTCTTCGTGCTTGCCGCCGTCTTCAAAGTTTCCTCTCCTCTCAAACTTTGATTGTTGATTTTGTGGTTGGATTGTTTTGTTTTGATTCTACAGCTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGTGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGGAGTCGATGGAAGCGTGCTATTCAAGCGTTCGGAGAGTTTAGAGCAAAGACCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGA ATGATGGTTGAGTTTTCCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTTGTGTACATATTCATAAAGGTAAATATGTATCATGGTATACTCGCAGCTTTGCTCGTGCTTGCCGCCGTCTTCGGAGCTTCCTCTCCTCTCGTGCTCGTTCTTGTTGTGGCATCTTCTTCATGCTCGTTCTTGTTGTGGCATCTTCTTCGTGCTCGAAGCTGAACAAGCTTTCTGGGTTTTGGTTTTCTGAACAAGCTGAACACCTTCTTCGTGCTTGCCGCCGTCTTCAAAGTTTCCTCTCCTCTCAAACTTTGATTGTTGATTTTGTGGTTGGATTGTTTTGTTTTGATTCTACAGCTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGTGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGGAGTCGATGGAAGCGTGCTATTCAAGCGTTCGGAGAGTTTAGAGCAAAGACCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGA MMVEFSGEGGAKYFDDFDTCVHIHKGKYVSWYTRSFARACRRLRSFLSSRARSCCGIFFMLVLVVASSSCSKLNKLSGFWFSEQAEHLLRACRRLQSFLSSQTLIVDFVVGLFCFDSTAVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQAFGEFRAKTQQKGTFGGAGLKKSGKK Homology
BLAST of Spg024345 vs. NCBI nr
Match: XP_008464896.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis melo] >KAA0051555.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. NCBI nr
Match: TYK21267.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. NCBI nr
Match: XP_011654973.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis sativus] >KGN50596.1 hypothetical protein Csa_021408 [Cucumis sativus]) HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. NCBI nr
Match: XP_008464897.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. NCBI nr
Match: XP_031740922.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. ExPASy Swiss-Prot
Match: Q2V3H0 (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2) HSP 1 Score: 82.0 bits (201), Expect = 8.0e-15 Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Spg024345 vs. ExPASy Swiss-Prot
Match: Q8LG95 (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05 Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 0
BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A5D3DC90 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00190 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A5A7UD21 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00890 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A0A0KSA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G189910 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A1S3CMN8 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502655 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A1S3CP50 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502655 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17 Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0
BLAST of Spg024345 vs. TAIR 10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16 Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Spg024345 vs. TAIR 10
Match: AT4G18975.2 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16 Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Spg024345 vs. TAIR 10
Match: AT4G18975.3 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16 Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Spg024345 vs. TAIR 10
Match: AT4G18975.4 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16 Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0
BLAST of Spg024345 vs. TAIR 10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein ) HSP 1 Score: 51.6 bits (122), Expect = 8.2e-07 Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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