Spg024345 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg024345
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPentatricopeptide repeat-containing protein
Locationscaffold4: 19564530 .. 19566600 (-)
RNA-Seq ExpressionSpg024345
SyntenySpg024345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTTGAGTTTTCCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTTGTGTACATATTCATAAAGGTAAATATGTATCATGGTATGTAGGGGTGCAAAGAACCGAACCGAACCGAACCGTTTCGGTTTGGTTCGGGTTTCATCTTTATATGTGACCGAACCGAACCGAACCGAAAAGTTCGGTTTGGTCCTCGTATAAATTGCCCGAACCGATATTAGGGTTCCGTCAGTCGCATCTTCTTTTTCTCGCTTAAAATTTTCGTTCCTCACATCGTAATTGCAGACTCGCAGCTTTGCTCGTGCTTGCCGCCGTCTTCGGAGCTTCCTCTCCTCTCGTGCTCGTTCTTGTTGTGGCATCTTCTTCATGCTCGTTCTTGTTGTGGCATCTTCTTCGTGCTCGAAGCTGAACAAGCTTTCTGGGTTTTGGTTTTCTGAACAAGCTGAACACCTTCTTCGTGCTTGCCGCCGTCTTCAAAGTTTCCTCTCCTCTCAAACTTTGATTGTTGATTTTGGTAATTTCTTTCTCATGTTTCATTTTCATTGTTGATTCCATGGACCCTTTTCTTTTCCTTCTATTCCTTCTATTTTTAGCGATGACCTAATCCTTGGTGTTTCGTTGTTTCGTTGGGGATTCTTCGAGTTTCATTGTTTCTCTTCTTGAGTTGATCTCGTTGGTTGCTTTCTACTTAGTTCAGAAACGAGGGTTTCTGTGGATTTCTCTGTGCATTTTCTTAATAGTCAATACTCTTTTGATCAGTGGTTGGATTGTTTTGTTTTGATTCTACAGCTGTTAGTTCGATGTTTAGTAAGTGTGTTTTTGGGTTGTTTTGATTGCTCTGTTTTCGAAAGGTTTGTTGTTTGGTTTTGTCTCGTCTGCTGTGGAAACTGTAGTATAGTGATTTGTAAGTCATTTTGGGTGAATAACACTCCCTTGAATTTTAGATTTATTTGGTGAAGAAATCCAAATGCTTTTCTTACATATTGTAGGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGTGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGGAGTCGATGGAAGCGTGCTATTCAAGTATGAATAAGTTCAGTTTTACTTATTATCGTTTTGGCCTTTAGTTTGTTGGTACCTCGCTCATAATGTGCCAATGTGGTTCCAATCTGTATATGAGCTGATGGCCTATTGTCATTATGGATTCTTTTTGATAGACATTCTAGGTTTTGATTCTAAACTATGCGGTGATGCCTATTATGATTTCATCTTGTGTTCTTGTTGCTTTTACTTTGCTTATTGTTTGGTCAATAACATAATCATGTGCTAGCTTTTTATTGTAATGTGGCATTTATTTGATTAGTTATGTTTTTTTTTTTCAGCTTTTATGCTGAAGTGAAGAAACCTGTGACAAGTTAAATTCTGTGTAAAATTGTAAATGATAGTTTGTGTGGCTTTTCGTTATCTTTTAGATTAGAATGGAAAATAAAGTTCATGTGGCTTGCTTTCCAAGGATGCTTGTTTTCTTCATTTAAATTTATTTGATCTTGAACTAGAAGTTATTGACCATATTGAATTTTGTTAAAACTTGGTTCTTTCTTTTGACAATTGAGATGCTGTCATGTTGGGTTAAAGAAATTTCTTTACATTTATATGGTTTCTATACAGTTAGTTGGGGAGTTGATTGGGATTAAATTAACCAATCTGCAGACTGTAGTACTTTTTGTCCTTTGTCTTTCTATGAAAAGATTGGAGGGTGAGAGTGAGATCTGTAAATTCTAATTCCTCTATCTTTTACTTTTAAATTAACAATGGAGCTGAAGTTGTATCGAGAATAAGAAATCAAGCAAGCGACAACTGTTTTTGTTTTAGTCTTTTAGATATGTAATTTAAAGATTGCTACTAAAAACTTTCAGTTGTTTGATGTTATAGGCGTTCGGAGAGTTTAGAGCAAAGACCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGA

mRNA sequence

ATGATGGTTGAGTTTTCCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTTGTGTACATATTCATAAAGGTAAATATGTATCATGGTATACTCGCAGCTTTGCTCGTGCTTGCCGCCGTCTTCGGAGCTTCCTCTCCTCTCGTGCTCGTTCTTGTTGTGGCATCTTCTTCATGCTCGTTCTTGTTGTGGCATCTTCTTCGTGCTCGAAGCTGAACAAGCTTTCTGGGTTTTGGTTTTCTGAACAAGCTGAACACCTTCTTCGTGCTTGCCGCCGTCTTCAAAGTTTCCTCTCCTCTCAAACTTTGATTGTTGATTTTGTGGTTGGATTGTTTTGTTTTGATTCTACAGCTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGTGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGGAGTCGATGGAAGCGTGCTATTCAAGCGTTCGGAGAGTTTAGAGCAAAGACCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGA

Coding sequence (CDS)

ATGATGGTTGAGTTTTCCGGAGAGGGTGGAGCTAAATACTTTGACGATTTTGACACTTGTGTACATATTCATAAAGGTAAATATGTATCATGGTATACTCGCAGCTTTGCTCGTGCTTGCCGCCGTCTTCGGAGCTTCCTCTCCTCTCGTGCTCGTTCTTGTTGTGGCATCTTCTTCATGCTCGTTCTTGTTGTGGCATCTTCTTCGTGCTCGAAGCTGAACAAGCTTTCTGGGTTTTGGTTTTCTGAACAAGCTGAACACCTTCTTCGTGCTTGCCGCCGTCTTCAAAGTTTCCTCTCCTCTCAAACTTTGATTGTTGATTTTGTGGTTGGATTGTTTTGTTTTGATTCTACAGCTGTTTCCCAATGTCCTAATGAGAAAGAAGCTGTATATGGTGAATTGAATAAGTGGATAGCTTGGGAGACAGAGTTTCCATTGATTGCAGCTGCTAAAGCTTTAAGAATACTGAGGAAGAGGAGTCGATGGAAGCGTGCTATTCAAGCGTTCGGAGAGTTTAGAGCAAAGACCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAGAGTGGGAAGAAATGA

Protein sequence

MMVEFSGEGGAKYFDDFDTCVHIHKGKYVSWYTRSFARACRRLRSFLSSRARSCCGIFFMLVLVVASSSCSKLNKLSGFWFSEQAEHLLRACRRLQSFLSSQTLIVDFVVGLFCFDSTAVSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQAFGEFRAKTQQKGTFGGAGLKKSGKK
Homology
BLAST of Spg024345 vs. NCBI nr
Match: XP_008464896.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis melo] >KAA0051555.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 86  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 133

BLAST of Spg024345 vs. NCBI nr
Match: TYK21267.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 37  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 84

BLAST of Spg024345 vs. NCBI nr
Match: XP_011654973.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucumis sativus] >KGN50596.1 hypothetical protein Csa_021408 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 86  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 133

BLAST of Spg024345 vs. NCBI nr
Match: XP_008464897.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 46  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 93

BLAST of Spg024345 vs. NCBI nr
Match: XP_031740922.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 83  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 130

BLAST of Spg024345 vs. ExPASy Swiss-Prot
Match: Q2V3H0 (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 8.0e-15
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Sbjct: 105 LSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQ 152

BLAST of Spg024345 vs. ExPASy Swiss-Prot
Match: Q8LG95 (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 0

Query: 125 NEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQAFGEFRAKTQQK--GTF 183
           N KE VYG L+ +IAWE EFPL+   KAL IL     WK+ IQ      +K Q +  GT+
Sbjct: 70  NVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTY 129

BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A5D3DC90 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00190 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 37  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 84

BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A5A7UD21 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00890 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 86  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 133

BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A0A0KSA5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G189910 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 86  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 133

BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A1S3CMN8 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502655 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 46  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 93

BLAST of Spg024345 vs. ExPASy TrEMBL
Match: A0A1S3CP50 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502655 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.3e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRS+WKR IQ
Sbjct: 86  VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSQWKRVIQ 133

BLAST of Spg024345 vs. TAIR 10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Sbjct: 105 LSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQ 152

BLAST of Spg024345 vs. TAIR 10
Match: AT4G18975.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Sbjct: 78  LSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQ 125

BLAST of Spg024345 vs. TAIR 10
Match: AT4G18975.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Sbjct: 105 LSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQ 152

BLAST of Spg024345 vs. TAIR 10
Match: AT4G18975.4 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-16
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 0

Query: 120 VSQCPNEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQ 168
           +S  PNEKEAVYG LNKW+AWE EFP+IAAAKAL+ILRKRS+W R IQ
Sbjct: 105 LSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQ 152

BLAST of Spg024345 vs. TAIR 10
Match: AT4G21190.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 8.2e-07
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 0

Query: 125 NEKEAVYGELNKWIAWETEFPLIAAAKALRILRKRSRWKRAIQAFGEFRAKTQQK--GTF 183
           N KE VYG L+ +IAWE EFPL+   KAL IL     WK+ IQ      +K Q +  GT+
Sbjct: 70  NVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTY 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008464896.14.8e-1795.83PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ... [more]
TYK21267.14.8e-1795.83pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
XP_011654973.14.8e-1795.83pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ... [more]
XP_008464897.14.8e-1795.83PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ... [more]
XP_031740922.14.8e-1795.83pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 ... [more]
Match NameE-valueIdentityDescription
Q2V3H08.0e-1577.08Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop... [more]
Q8LG951.2e-0546.67Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A5D3DC902.3e-1795.83Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7UD212.3e-1795.83Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0KSA52.3e-1795.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G189910 PE=4 SV=1[more]
A0A1S3CMN82.3e-1795.83pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X2 ... [more]
A0A1S3CP502.3e-1795.83pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ... [more]
Match NameE-valueIdentityDescription
AT4G18975.15.6e-1677.08Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G18975.25.6e-1677.08Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G18975.35.6e-1677.08Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G18975.45.6e-1677.08Pentatricopeptide repeat (PPR) superfamily protein [more]
AT4G21190.18.2e-0746.67Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015157Translation machinery associated TMA7PFAMPF09072TMA7coord: 161..193
e-value: 7.4E-5
score: 23.5
NoneNo IPR availablePANTHERPTHR46782:SF2OS07G0545900 PROTEINcoord: 119..177
IPR044646Pentatricopeptide repeat-containing protein EMB1417-likePANTHERPTHR46782OS01G0757700 PROTEINcoord: 119..177

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg024345.1Spg024345.1mRNA