Spg024167 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024167
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold4: 21069080 .. 21070469 (-)
RNA-Seq Expression	Spg024167
Synteny	Spg024167

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCATGATAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATATACTTGATATGCCTTGCTAGATTCTTAATGACGGACTTGCGAAATGTTTTAGAAAGCCTTTATCCTTACACGTTTATGTTAAACGCTTTGACTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCAGATTTAGAGTTTTAAAATTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTCATATTGTAAATGTTTTGTAAGGGTTGTATAATATCGTCCTAGAGGTCGTGGATGTATAACCCTAGTTGTATATGTTTTGGTCGTGATATCTATATCAGGTTACTTTCTAAACCAGGTTATGTCAGGGCTGCACCACGTGTATGTTGAAAGGTTTCCGTGGATTCCGCTGTGTGGTGTTTCATATAGAATGTTTTATATCTATGATTTGTATGTTTATCAGGTTCAACGTTTCAGTAGAGCTAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCGACGAACAGGCCTGTTAAGGTCAAATCGAACCTTAATCCGCAAACTTGCTCCCCAAAAAAGATAATCATTCCGGCTGTCAACATCCTCAAAAATTCCCAAAGCATTACCTAGACGTTCTGCCATACCTCGACTGAACCAGTCAAGGGGGAGTTCGAACACATGAATCCAAAAACACACCGATGAGAATGGATGGTTAGACGATCGGATTCCACAGATTGGGAAACGAGCACCAGAAGAAATTTTTTAAAGGTCCAAGGACCTTGACGAACAACTCGTACCCTATCTGCTTCATTATTGAAACGGAATATGAATAAATTCCTCCCCAAACGATCTACAAGTAGACCGTTGTCAATCTTCCACGTAACACGAAAATTCATTCTCATCACTTCAGCAGCCAGAGGTCGATGGCACAGCAGTTTGCCCAGAAGACAGGATCCCAAGAAAAGACCAGTCTGATCCACTGCTTCTCGATCCGCAACCACAGAGATCTCTTCCTCATCCGTAG

mRNA sequence

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGAGCTAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCGACGAACAGGCCTGTTAAGCAGCCAGAGGTCGATGGCACAGCAGTTTGCCCAGAAGACAGGATCCCAAGAAAAGACCAGTCTGATCCACTGCTTCTCGATCCGCAACCACAGAGATCTCTTCCTCATCCGTAG

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGAGCTAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAGCGACGAACAGGCCTGTTAAGCAGCCAGAGGTCGATGGCACAGCAGTTTGCCCAGAAGACAGGATCCCAAGAAAAGACCAGTCTGATCCACTGCTTCTCGATCCGCAACCACAGAGATCTCTTCCTCATCCGTAG

Protein sequence

MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTWFNVSVELTGIVRGDDVCWLHAVFRAKLAGGPGGGVTATNRPVKQPEVDGTAVCPEDRIPRKDQSDPLLLDPQPQRSLPHP

Homology

[Close]

BLAST of Spg024167 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23
Identity = 67/101 (66.34%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  VSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGGV 77
           + VE        L GIVR DDVCWLHAVFRAK AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg024167 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23
Identity = 67/101 (66.34%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  VSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGGV 77
           + VE        L GIVR DDVCWLHAVFRAK AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg024167 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21
Identity = 68/115 (59.13%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-- 60
           MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +  
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61  ---------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGPGGGV--TATNRPVKQ 86
                    FN+SVE TGIVRGDDVCWLHAVFRAK  GGP GGV    T+R  KQ
Sbjct: 61  QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGVMPPRTSRRHKQ 115

[Close]

BLAST of Spg024167 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.8e-20
Identity = 62/104 (59.62%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW------------------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                   
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  --------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGPGGGVT 78
                   FNVSV  TGIVRGDDVCWLHAVFR K A  PG  VT
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVT 104

[Close]

BLAST of Spg024167 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 7.9e-18
Identity = 64/120 (53.33%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWF- 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW  
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   ----NVSVEL-------------------TGIVRGDDVCWLHAVFRAKLAGGPGGGVTAT 80
                +V VE+                    GIVRGDDVCWLHAVFRAK AGGP GGVT +
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTGS 1405

[Close]

BLAST of Spg024167 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.0e-24
Identity = 67/101 (66.34%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  VSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGGV 77
           + VE        L GIVR DDVCWLHAVFRAK AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg024167 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.0e-24
Identity = 67/101 (66.34%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWFN 60
           MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS S+SSTW  
Sbjct: 1   MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

Query: 61  VSVE--------LTGIVRGDDVCWLHAVFRAKLAGGPGGGV 77
           + VE        L GIVR DDVCWLHAVFRAK AGGPGGGV
Sbjct: 61  LYVEFVHVEMFWLAGIVREDDVCWLHAVFRAKTAGGPGGGV 101

[Close]

BLAST of Spg024167 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.8e-21
Identity = 68/115 (59.13%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTW-- 60
           MTEILS RL+GTVCTQ                 VEIELPVPDTLPTS ESS S+SS +  
Sbjct: 1   MTEILSLRLHGTVCTQVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSTESSESNSSYFTN 60

Query: 61  ---------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGPGGGV--TATNRPVKQ 86
                    FN+SVE TGIVRGDDVCWLHAVFRAK  GGP GGV    T+R  KQ
Sbjct: 61  QVMSGLHLVFNISVESTGIVRGDDVCWLHAVFRAKTTGGPRGGVMPPRTSRRHKQ 115

[Close]

BLAST of Spg024167 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 62/104 (59.62%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRSSSSTW------------------- 60
           MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS S+ +TW                   
Sbjct: 1   MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLELYFESVHVEIFCYFTNQ 60

Query: 61  --------FNVSVELTGIVRGDDVCWLHAVFRAKLAGGPGGGVT 78
                   FNVSV  TGIVRGDDVCWLHAVFR K A  PG  VT
Sbjct: 61  VMSGLHLVFNVSVGSTGIVRGDDVCWLHAVFRDKTAVDPGECVT 104

[Close]

BLAST of Spg024167 vs. ExPASy TrEMBL
Match: A0A5D3CCC7 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00430 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.8e-18
Identity = 64/120 (53.33%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 1    MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRSSSSTWF- 60
            MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   S+SSTW  
Sbjct: 1286 MTEILSLRLDGTVCTQVIFPLSTLSVLRDNNAVVEIELPVPDTLPTSAEIFESNSSTWLE 1345

Query: 61   ----NVSVEL-------------------TGIVRGDDVCWLHAVFRAKLAGGPGGGVTAT 80
                +V VE+                    GIVRGDDVCWLHAVFRAK AGGP GGVT +
Sbjct: 1346 LYLESVHVEMLFYKPSDVRAASYVCWEGSAGIVRGDDVCWLHAVFRAKTAGGPEGGVTGS 1405

The following BLAST results are available for this feature:

BLAST of Spg024167 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27998.1	1.6e-23	66.34	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	1.6e-23	66.34	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK01041.1	5.9e-21	59.13	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]
KAA0062407.1	3.8e-20	59.62	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
TYK08952.1	7.9e-18	53.33	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg024167 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX39	8.0e-24	66.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	8.0e-24	66.34	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3BMJ4	2.8e-21	59.13	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7V638	1.8e-20	59.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CCC7	3.8e-18	53.33	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Spg024167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024167.1	Spg024167.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity