Spg024163 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg024163
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold4: 19940489 .. 19942864 (-)
RNA-Seq Expression	Spg024163
Synteny	Spg024163

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCATCCAGTTTGAAGAGCCAGTCGAGTCACCCTTTATGGAGGCCGCCAGACCGTGGATGGTGGAAGCTCAACTCCGATGCCGCCTGGAGCAATTCCGCAAGGAGAGGAGGCGTTGGATGGGTGCTTCGTGAGTCCACCGGATCTTTAGTTGGAGCAGGTTGCAGTCAAATTACCCGGAGCTGGCCAATCAAGGCCCTTGAAGGCGAAGCTATTCGCGTTGGCTTGAGCGCGTTTCTTCGTGGGACGAGTGACGGCCGCCTCAGACCTCCGTTAAAGGTCGAATCAGATGCCCTCGGTGTCGTGAAAGTGTTAGCGGGAGAGGAAGAAGATCTTTCGGAATCAGGCCTGATCTTCGCTGTGATTTTAGAGATGTCTAGGGGAGAAAGAGTCGATTTTGAGTTGTGTAGTAGAAGTACCAATGTTTTGGCCCATCAGCTTGCGCATGCAGCAACTGAATGGGGGGATTTTTCTATGTTTTTTGGCTCTTCTTCCCCTGTTCTAGAAGATAGAGAGGTTGGTAGAGATGAGAGTATCCCTCATTGGTTTGTTTCTTTATTATCTGTGGACGTTGGTAGATCTAACGAACTACTAAACCATATTATCTCATCCAAATTTATTTAATGGAGTACTACATCAATATTCCACATTCAGCATTAAGGACATAGACTAAGGGTAACAATAATTCAAAATCTAAAAACGTAATTGAAAGTTTTTAAAGTCCATAAACGAAGACTAAGAAAACATAATGTCAAGGGGCAGTTGTATAGATGGCAAATTGAACCAAATTAATAGCAAATATAGCACAGTTTCAAACTAATTGCAAATATAGCAAAATTAATTGTACAAGACCAAAAAGCTGTTGTCGGATTCTATCCGTGTCTATCACTAATAGACTCTGATTATTCAAAGTATATCAATGTCTATCGCTGATAGACTTCGATTAATCAAAGTCTATTAGTGATAGTCACTGATAGACACTGATAGACATTGATAGATTTTGATTAACCAGAGTTTATCAGTGATAGACATTGATAGACTCTGAGTAATCGGAGTCTATCAGTAGACTGATAGATTCTGATTAATCAGAGTCTATCGCTGATAAACTCTGATAATCGAAGTCTATCAGATAGACTCCGATAGATTTTGCTATATTTGTAATTTTTTTTATATGGTGCTATATTTGCTATTAATTTGGTCCAATTTGCCACCCACTGCAGTTTTCCTAATGTTAAAGTATATATACAAAAGTTATAATCTAATCCATACTGTATAAATGTAGGCAACACGGATATGATTTATTTATATATTCTTACTAAAAGAAACTTTTGAGATTATTTAGTGAACTTTTTGTCTTTTAAAATGATTTTAGTTACAACCTTTTTTACAAAATTACTATATTACATATATTTTATAAAACCAAGGTATAGGATGCAATATAATAAATTTTCATCTTTTAACTTTCCCACACTAATAAAATTTGGATAATGTGACTGGACGACGCCGTTTGCCTGATATAAGTGTTGATTCCGAGGTTTGAACAAGGGGTCCCACCCTCACATTGGCCTGAGAGGGACTTTGTTTAATGGTTGAACCATAAACAAATTGTTCATTAGAGGACTAGTGGACTTAAGGAACAAAGATGTGCTATAGGGGTAAAACGGACTTTTGACCTGGCTATAGTTACGAATGACCTGTGAAGGATTGACTTACCATCATATTGTTCCAAAGTTTATTCCTTAAGCTAGAAAGGGGACCTAACGAACCTACAAATCATGGGCTCCAACGATTCGAGGTTTAACTGGCCAAACTTTTTTAACCTAGTTAACTAACATTCATTAACTACCGGGTCACTCCACTATAGCCTAGTAGTTGCACTCCCCTCACTGTAGATATATTTATGTCCACTCGATATAACCATGATTAGTAAGTCAACCCTTCACAGGTCGCTCGTAACTATAGCTAGGTCAAAAGTCCGTTTTACCCCTATAGCACTTCTTGTTTCCTTAAGTCCACTGGTCCTCTAATGAACAATATTAGTTTGTGATCAAACCACTAAACAGAGTCCCTCTCGGGCGAATGAGAGGGTGGGCCCTTTGTTCAAGCCTCGGAGTCAGGACTTAAGGAAACAACCTTTCTGCTATCCCTAATATTGGTAGGAGTGAATTCCTTCTTGCAATACTATGTCCCCAGCTATCTATCTGAAGGAGTGAAGAACACTTGAGCGGAAGTGTTAGCGGATCTTAGGCACTAATTTTCATTAATTTCGTTGATTAAAAGGATGTTGAAACCGAGAAAACAGATCAAGAACAACTAACCTCTTGGAGCTCCGAAATCGTTGATTCTCTTGGAAGTTTCTCCACACGAACTTGA

mRNA sequence

ATGGAGCCATCCAGTTTGAAGAGCCAGTCGAGTCACCCTTTATGGAGGCCGCCAGACCGTGGATGGTGGAAGCTCAACTCCGATGCCGCCTGGAGCAATTCCGCAAGGAGAGGAGGCGTTGGATGGGTGCTTCGTGAGTCCACCGGATCTTTAGTTGGAGCAGGTTGCAGTCAAATTACCCGGAGCTGGCCAATCAAGGCCCTTGAAGGCGAAGCTATTCGCGTTGGCTTGAGCGCGTTTCTTCGTGGGACGAGTGACGGCCGCCTCAGACCTCCGTTAAAGGTCGAATCAGATGCCCTCGGTGTCGTGAAAGTGTTAGCGGGAGAGGAAGAAGATCTTTCGGAATCAGGCCTGATCTTCGCTGTGATTTTAGAGATGTCTAGGGGAGAAAGAGTCGATTTTGAGTTGTGTAGTAGAAGTACCAATGTTTTGGCCCATCAGCTTGCGCATGCAGCAACTGAATGGGGGGATTTTTCTATGTTTTTTGGCTCTTCTTCCCCTGTTCTAGAAGATAGAGAGGATGTTGAAACCGAGAAAACAGATCAAGAACAACTAACCTCTTGGAGCTCCGAAATCGTTGATTCTCTTGGAAGTTTCTCCACACGAACTTGA

Coding sequence (CDS)

ATGGAGCCATCCAGTTTGAAGAGCCAGTCGAGTCACCCTTTATGGAGGCCGCCAGACCGTGGATGGTGGAAGCTCAACTCCGATGCCGCCTGGAGCAATTCCGCAAGGAGAGGAGGCGTTGGATGGGTGCTTCGTGAGTCCACCGGATCTTTAGTTGGAGCAGGTTGCAGTCAAATTACCCGGAGCTGGCCAATCAAGGCCCTTGAAGGCGAAGCTATTCGCGTTGGCTTGAGCGCGTTTCTTCGTGGGACGAGTGACGGCCGCCTCAGACCTCCGTTAAAGGTCGAATCAGATGCCCTCGGTGTCGTGAAAGTGTTAGCGGGAGAGGAAGAAGATCTTTCGGAATCAGGCCTGATCTTCGCTGTGATTTTAGAGATGTCTAGGGGAGAAAGAGTCGATTTTGAGTTGTGTAGTAGAAGTACCAATGTTTTGGCCCATCAGCTTGCGCATGCAGCAACTGAATGGGGGGATTTTTCTATGTTTTTTGGCTCTTCTTCCCCTGTTCTAGAAGATAGAGAGGATGTTGAAACCGAGAAAACAGATCAAGAACAACTAACCTCTTGGAGCTCCGAAATCGTTGATTCTCTTGGAAGTTTCTCCACACGAACTTGA

Protein sequence

MEPSSLKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMSRGERVDFELCSRSTNVLAHQLAHAATEWGDFSMFFGSSSPVLEDREDVETEKTDQEQLTSWSSEIVDSLGSFSTRT

Homology

[Close]

BLAST of Spg024163 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-13
Identity = 54/140 (38.57%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 15  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
           W PP    W LN+DA+WS+S  RGG+GW++R   G +V AG   +     +K LE  AI 
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 75  VGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMSRG-ERVD 134
            GL      T+ G LR PL +E+D+  V  +L  + EDL+++G +   IL +    E + 
Sbjct: 131 EGLRNL---TNLGVLR-PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILA 190

Query: 135 FELCSRSTNVLAHQLAHAAT 154
           F    R TN  AH LA  A+
Sbjct: 191 FAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Spg024163 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 78.6 bits (192), Expect = 7.1e-11
Identity = 51/145 (35.17%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 15  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
           W+PP    WKLN+DAAW      GG+GW+LR+  G ++ A C  I     I  LE  AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 75  VGLSAF----LRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMSRGE 134
            GL A      R       R P+ +ESD+L  + +L  + +D +E   +   I +M    
Sbjct: 139 EGLRAIRQEHCRPIQQEHCR-PIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDM 198

Query: 135 R-VDFELCSRSTNVLAHQLAHAATE 155
           + V     SR  N +AH LA  A E
Sbjct: 199 KIVSMRHISREANKVAHDLARRAME 222

[Close]

BLAST of Spg024163 vs. NCBI nr
Match: CAB4273082.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-11
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 15   WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
            WR P  G  K+N DAAW +  + GGVGWV+R+S G +V AG     R     A+E EAIR
Sbjct: 1147 WRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEAIR 1206

Query: 75   VGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGE-EEDLSESGLIFAVILEMSRGERVD 134
              L A ++          L+VESD+L V++++ GE   D++   ++F +   + + +   
Sbjct: 1207 EALVACVQSGLS-----KLEVESDSLQVIRMIGGEWNMDIAVDTIVFDIKQLVGQFQHCV 1266

Query: 135  FELCSRSTNVLAHQLA 150
            F    R+ N  AH++A
Sbjct: 1267 FLYTPRNCNKAAHKIA 1277

[Close]

BLAST of Spg024163 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-10
Identity = 49/141 (34.75%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 15  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
           W+PP    WKLN++AAW      GG+GW+LR+  G ++ A C  I     I  LE  AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 75  VGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMSRG-ERVD 134
            GL A  +         P+ +ESD+L  + +L  + +D +E   +   I +M +  E V 
Sbjct: 139 EGLRAIRQEHC-----RPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVS 198

Query: 135 FELCSRSTNVLAHQLAHAATE 155
               SR  N +AH LA  A E
Sbjct: 199 MRHISREANKVAHGLARRAME 214

[Close]

BLAST of Spg024163 vs. NCBI nr
Match: BBH00303.1 (Ribonuclease H-like superfamily protein [Prunus dulcis])

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-10
Identity = 53/145 (36.55%), Postives = 67/145 (46.21%), Query Frame = 0


Query: 13  PLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEA 72
           P W  P  G  KLN D AW     RGGVGWVLR+  G  + AG     R       E EA
Sbjct: 440 PGWSSPPPGLVKLNCDGAWVAQTGRGGVGWVLRDGIGCFISAGGCGDMRCTSALMAEAEA 499

Query: 73  IRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEE-EDLSESGLIFAVILEMSRGER 132
           +R  L+  L    D      + VESD+L ++K+L  E+  DL   G++F V     R   
Sbjct: 500 VREALTWCLELGFD-----KVAVESDSLSLIKMLNKEDVVDLEIEGILFDVHCLSHRAHH 559

Query: 133 VDFELCSRSTNVLAHQLAHAATEWG 157
           V+F    R  N  AH +A  A   G
Sbjct: 560 VEFLYAPRKCNQAAHNVAAYAFRIG 579

[Close]

BLAST of Spg024163 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.3e-14
Identity = 54/140 (38.57%), Postives = 76/140 (54.29%), Query Frame = 0


Query: 15  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
           W PP    W LN+DA+WS+S  RGG+GW++R   G +V AG   +     +K LE  AI 
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 75  VGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMSRG-ERVD 134
            GL      T+ G LR PL +E+D+  V  +L  + EDL+++G +   IL +    E + 
Sbjct: 131 EGLRNL---TNLGVLR-PLHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEILA 190

Query: 135 FELCSRSTNVLAHQLAHAAT 154
           F    R TN  AH LA  A+
Sbjct: 191 FAKVGRETNGCAHSLAQRAS 206

[Close]

BLAST of Spg024163 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.4e-11
Identity = 51/145 (35.17%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 15  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
           W+PP    WKLN+DAAW      GG+GW+LR+  G ++ A C  I     I  LE  AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 75  VGLSAF----LRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMSRGE 134
            GL A      R       R P+ +ESD+L  + +L  + +D +E   +   I +M    
Sbjct: 139 EGLRAIRQEHCRPIQQEHCR-PIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDM 198

Query: 135 R-VDFELCSRSTNVLAHQLAHAATE 155
           + V     SR  N +AH LA  A E
Sbjct: 199 KIVSMRHISREANKVAHDLARRAME 222

[Close]

BLAST of Spg024163 vs. ExPASy TrEMBL
Match: A0A6J5UAY2 (Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS20161 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-11
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 15   WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
            WR P  G  K+N DAAW +  + GGVGWV+R+S G +V AG     R     A+E EAIR
Sbjct: 1147 WRKPPYGVLKVNCDAAWVSQTQMGGVGWVVRDSDGWMVQAGGKGDMRGGSALAMEAEAIR 1206

Query: 75   VGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGE-EEDLSESGLIFAVILEMSRGERVD 134
              L A ++          L+VESD+L V++++ GE   D++   ++F +   + + +   
Sbjct: 1207 EALVACVQSGLS-----KLEVESDSLQVIRMIGGEWNMDIAVDTIVFDIKQLVGQFQHCV 1266

Query: 135  FELCSRSTNVLAHQLA 150
            F    R+ N  AH++A
Sbjct: 1267 FLYTPRNCNKAAHKIA 1277

[Close]

BLAST of Spg024163 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.8e-11
Identity = 49/141 (34.75%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 15  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
           W+PP    WKLN++AAW      GG+GW+LR+  G ++ A C  I     I  LE  AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 75  VGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMSRG-ERVD 134
            GL A  +         P+ +ESD+L  + +L  + +D +E   +   I +M +  E V 
Sbjct: 139 EGLRAIRQEHC-----RPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVS 198

Query: 135 FELCSRSTNVLAHQLAHAATE 155
               SR  N +AH LA  A E
Sbjct: 199 MRHISREANKVAHGLARRAME 214

[Close]

BLAST of Spg024163 vs. ExPASy TrEMBL
Match: A0A4Y1R838 (Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 53/145 (36.55%), Postives = 67/145 (46.21%), Query Frame = 0


Query: 13  PLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEA 72
           P W  P  G  KLN D AW     RGGVGWVLR+  G  + AG     R       E EA
Sbjct: 440 PGWSSPPPGLVKLNCDGAWVAQTGRGGVGWVLRDGIGCFISAGGCGDMRCTSALMAEAEA 499

Query: 73  IRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEE-EDLSESGLIFAVILEMSRGER 132
           +R  L+  L    D      + VESD+L ++K+L  E+  DL   G++F V     R   
Sbjct: 500 VREALTWCLELGFD-----KVAVESDSLSLIKMLNKEDVVDLEIEGILFDVHCLSHRAHH 559

Query: 133 VDFELCSRSTNVLAHQLAHAATEWG 157
           V+F    R  N  AH +A  A   G
Sbjct: 560 VEFLYAPRKCNQAAHNVAAYAFRIG 579

[Close]

BLAST of Spg024163 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-09
Identity = 41/142 (28.87%), Postives = 66/142 (46.48%), Query Frame = 0


Query: 8   SQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKA 67
           ++SS   WRPP   W K N+DA W+    R G+GWVLR   G +   G   + +   +  
Sbjct: 413 NRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLE 472

Query: 68  LEGEAIRVGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMS 127
            E EA+R  + +  R   +  +      ESD+  ++++L  +E   S    I  +   +S
Sbjct: 473 AELEAMRWAVLSLSRFQYNYVI-----FESDSQVLIEILNNDEIWPSLKPTIQDLQRLLS 532

Query: 128 RGERVDFELCSRSTNVLAHQLA 150
           +   V F    R  N LA ++A
Sbjct: 533 QFTEVKFVFIPREGNTLAERVA 549

[Close]

BLAST of Spg024163 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 7.8e-08
Identity = 36/144 (25.00%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 15  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
           W+ P   W K N+DA W     R G+GW+LR  +G ++  G   + R+  +   E EA+R
Sbjct: 137 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALR 196

Query: 75  VGLSAFLRGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMSRGERVDF 134
             +    R          +  ESDA  +V +L  ++   +    +  +   +   E V F
Sbjct: 197 WAVLTMSRFN-----YKRIIFESDAQALVNLLNSDDFWPTLQPALEDIQQLLHHFEEVKF 256

Query: 135 ELCSRSTNVLAHQLAHAATEWGDF 159
           E   R  N +A ++A  +  + ++
Sbjct: 257 EFTPRGGNKVADRIARESISFSNY 275

[Close]

BLAST of Spg024163 vs. TAIR 10
Match: AT5G19270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G03566.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 9.5e-06
Identity = 39/157 (24.84%), Postives = 60/157 (38.22%), Query Frame = 0


Query: 15  WRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAGCSQITRSWPIKALEGEAIR 74
           W PPD G  K N +A W N+    GV W+ R+  G  +       TRS          I 
Sbjct: 61  WTPPDFGIVKCNVNAHWGNADMMSGVAWIARDVNGLALYHARDAFTRS-------SNRIM 120

Query: 75  VGLSAFL---RGTSDGRLRPPLKVESDALGVVKVLAGEEEDLSESGLIFAVILEMSRGER 134
             L   L   +   D RL+  + + SD    +  L    +    +  +  + +       
Sbjct: 121 AELRCILWVVKSLRDLRLQNVI-ISSDCQAAIAALYNPRDWPRYAMWLDTIFIACQSFPF 180

Query: 135 VDFELCSRSTNVLAHQLAHAATEWGDFSMFFGSSSPV 169
           + FEL S   N +A  +A + T  G F+ +     PV
Sbjct: 181 IIFELVSCPANSIARDIAESVTRDGRFNPYLSEGGPV 209

[Close]

BLAST of Spg024163 vs. TAIR 10
Match: AT1G27870.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-05
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 6  LKSQSSHPLWRPPDRGWWKLNSDAAWSNSARRGGVGWVLRESTGSLVGAG 56
          ++ + +H  WR P+RGW K N D ++ N   +   GWV+R+S GS + AG
Sbjct: 43 VREEDNHDRWRRPERGWIKCNFDGSFVNGDVKSKAGWVVRDSNGSYLLAG 92

The following BLAST results are available for this feature:

BLAST of Spg024163 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	1.5e-13	38.57	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	7.1e-11	35.17	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
CAB4273082.1	9.2e-11	35.29	unnamed protein product [Prunus armeniaca]	[more]
XP_022143535.1	1.2e-10	34.75	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
BBH00303.1	2.7e-10	36.55	Ribonuclease H-like superfamily protein [Prunus dulcis]	[more]

BLAST of Spg024163 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg024163 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	7.3e-14	38.57	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DSV1	3.4e-11	35.17	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J5UAY2	4.5e-11	35.29	Reverse transcriptase domain-containing protein OS=Prunus armeniaca OX=36596 GN=...	[more]
A0A6J1CP26	5.8e-11	34.75	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A4Y1R838	1.3e-10	36.55	Ribonuclease H-like superfamily protein OS=Prunus dulcis OX=3755 GN=Prudu_010255...	[more]

BLAST of Spg024163 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	7.0e-09	28.87	Ribonuclease H-like superfamily protein	[more]
AT2G34320.1	7.8e-08	25.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G19270.1	9.5e-06	24.84	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G27870.1	1.2e-05	40.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 26..152 e-value: 2.3E-16 score: 59.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 23..156 e-value: 7.3E-7 score: 31.2
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 12..154
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 12..154
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 25..150 e-value: 3.50902E-14 score: 64.2576
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 21..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg024163.1	Spg024163.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity