Spg023997 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023997
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S13
Location	scaffold13: 7510601 .. 7512455 (-)
RNA-Seq Expression	Spg023997
Synteny	Spg023997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCAGAGTGCACTGCAAATTTCCCAAATCAAAATCAAAACCCTAAAAGCCGCCATTGTTTTGCAGTGTTTCAGCGAAGGAGCAGCCGAAGTTGCCGTTCAACTTCAGAGAATCAGAAGCCGTTTTCTTCTCCACGCGCCGCCGCTATGGGTCGTATGCACAGTCGAGGGTTCGTCTTTACTTACAGTGAAGAAATCTTGCGTTTAAGCTTCTTCGAAAAATCGGTTTAGAAGTTCCAAATAGTTTTTTTTTTTACTCTGCTTATTTGCATTTGCAGTAAGGGTATTTCAGCTTCGGCACTGCCTTACAAGAGGACGCCACCAAGTTGGTTGAAGATCTCCTCTCAGGATGTGAGAATTCCTCGCCTAGCTTTTGTAAATTGGTTTTTTTGGGGTTGGGCCTCGATCGTTCTAATTGATTAGAAATAGTGGAAAGGAAAATGTGTGTTAAAATGTAGATTCTACCTAATTTCATGGTGTTATAGAGCTATTCAATCATGAGTTAATACCAAGGACAGCATTGCCTATTGAATGAAAGGTTTTCTATGTTTGTATGATGTTTTGTGATTGTGCAGTTCTTGAGCACATAAATGCCTTAGGTTCTTAGTCTGTGATCGTGTAGAGTTCTTGTAAAAGATTGCTCATGTAATTGGCGAACAATGGAAATTGCAGTCGCATGGCGACATGTTTTTGAGTGTCATCTGAGTGCCAATTCTGATGGTTATACTTATACTTTTATAATGTCTAAGAAAACCGATCAAGTTCTTCCATTGCTTGTCATTTTAACTGCTAGTCTTTGTAATGGAAGAGTAGTGAATCTCTCTACTATCTATAGAAATTGATGGCTTTCCTTTGATCATTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGTGAGCCCCATCTACCCATCCTCCATTGAACTTCTATTTTAATTATTATGTTATTCTTTTTAACATGTTTTCTTTTTTGGCTCAGGGCTAGCTCCTGAAATCCCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCAATCAGAAAACATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTAGTAAGTATTTTAAGGCACAGGAGCACATGAATTATTTATTATTTAAATTTAAACTTATTGCATGAAAATGTTGCATATTAGATTAAATTCATATTCTCGCATGATGCTGATCTTTAGCTTTAAAATTGCCCGTTGAATTCTTAAAAGAGACTGTTAGAGGAGAAATTGCGTATAAAGGATGATGTCTAGTAAATGCCTGTTCGGTTTCAGTATCAAAACAGCCACTAGATTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTTCTATTTTTCTTCATATTTTTTGAGTTCAACAAATGAGGAGGGTGGGGGATTGATGTGTTCTTAGGGGAGAAGGTAGAGGTGCGTGGCAACAACTAAATTTATCTCATAAAACATGAACTAAAACTTAGCTTTGTGGTGTTCCGATACTGTTAGTTTCAACTCTTGTTGCATGCTGGATTGCCATACTTCCAAGTGTCTTTACAGAGTTGCATCTAGACTTGAGAATCTTATATATGGTGTTCATTCTTTGCATTATGCTCATAGCCCTCCATTCGAACTCCTAAGGATGCTTAGTCCATCTCAAGACCAGCATTAA

mRNA sequence

ATGGGTCGTATGCACAGTCGAGGTAAGGGTATTTCAGCTTCGGCACTGCCTTACAAGAGGACGCCACCAAGTTGGTTGAAGATCTCCTCTCAGGATGTGAGAATTCCTCGCCTAGCTTTTGTTTTCTATGTTTGTATGATGTTTTGTGATTGTGCAGTTCTTGAGCACATAAATGCCTTAGAAATTGATGGCTTTCCTTTGATCATTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCCCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCAATCAGAAAACATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTATTTCAACTCTTGTTGCATGCTGGATTGCCATACTTCCAAGTGTCTTTACAGAGTTGCATCTAGACTTGAGAATCTTATATATGGTGTTCATTCTTTGCATTATGCTCATAGCCCTCCATTCGAACTCCTAAGGATGCTTAGTCCATCTCAAGACCAGCATTAA

Coding sequence (CDS)

ATGGGTCGTATGCACAGTCGAGGTAAGGGTATTTCAGCTTCGGCACTGCCTTACAAGAGGACGCCACCAAGTTGGTTGAAGATCTCCTCTCAGGATGTGAGAATTCCTCGCCTAGCTTTTGTTTTCTATGTTTGTATGATGTTTTGTGATTGTGCAGTTCTTGAGCACATAAATGCCTTAGAAATTGATGGCTTTCCTTTGATCATTCAGGTTGCCGAGAACATTTGCAAATTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGGATTGCTCAGGTGAAAAGTGTAACTGGGAGCAAGATCTTGCGTATATTGAAGGCTCATGGGCTAGCTCCTGAAATCCCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCAATCAGAAAACATTTGGAGAGAAACAGGAAAGACAAGGATTCCAAGTTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTGGCCCGGTATTACAAGAAGACAAAGAAGCTTCCCCCTGTTTGGAAGTATTTCAACTCTTGTTGCATGCTGGATTGCCATACTTCCAAGTGTCTTTACAGAGTTGCATCTAGACTTGAGAATCTTATATATGGTGTTCATTCTTTGCATTATGCTCATAGCCCTCCATTCGAACTCCTAAGGATGCTTAGTCCATCTCAAGACCAGCATTAA

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINALEIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYFNSCCMLDCHTSKCLYRVASRLENLIYGVHSLHYAHSPPFELLRMLSPSQDQH

Homology

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BLAST of Spg023997 vs. NCBI nr
Match: KOM32647.1 (hypothetical protein LR48_Vigan01g220300 [Vigna angularis])

HSP 1 Score: 269.6 bits (688), Expect = 2.5e-68
Identity = 143/178 (80.34%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV        FY+ +  C           
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDV-------AFYLSIYLCS---------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                  I+ V ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP
Sbjct: 61  ------KIMFVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 179
           EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 155

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BLAST of Spg023997 vs. NCBI nr
Match: PPS12785.1 (hypothetical protein GOBAR_AA07838 [Gossypium barbadense])

HSP 1 Score: 267.7 bits (683), Expect = 9.4e-68
Identity = 143/180 (79.44%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPR-LAFVFYVCMMFCDCAVLEHINA 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV + +  +   Y          L+++  
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVVLEKHESLKPYYKQNPPRSLQLDYLPR 60

Query: 61  LEIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 120
             ++  P   +V ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA
Sbjct: 61  RYVELSP--SKVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 120

Query: 121 PEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           PEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 PEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 178

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BLAST of Spg023997 vs. NCBI nr
Match: XP_022143980.1 (40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022964010.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_023000449.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023006177.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023514341.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >XP_023547500.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6574796.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013377.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6593712.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026051.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.4 bits (677), Expect = 4.6e-67
Identity = 141/179 (78.77%), Postives = 141/179 (78.77%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                            
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                     VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP
Sbjct: 61  ----------VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

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BLAST of Spg023997 vs. NCBI nr
Match: XP_020977293.1 (40S ribosomal protein S13 isoform X2 [Arachis ipaensis] >XP_025628670.1 40S ribosomal protein S13 isoform X2 [Arachis hypogaea])

HSP 1 Score: 265.0 bits (676), Expect = 6.1e-67
Identity = 140/180 (77.78%), Postives = 141/180 (78.33%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV                           
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVE-------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                       ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP
Sbjct: 61  ------------ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYF 180
           EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYF
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYF 142

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BLAST of Spg023997 vs. NCBI nr
Match: XP_028954044.1 (LOW QUALITY PROTEIN: 40S ribosomal protein S13 [Malus domestica])

HSP 1 Score: 264.6 bits (675), Expect = 7.9e-67
Identity = 141/179 (78.77%), Postives = 144/179 (80.45%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGISASALPYKRTPPSWLKIS+QDV             +FC           
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDV-------------VFC----------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                   +   ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP
Sbjct: 61  --------LLGXENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 147

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BLAST of Spg023997 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-68
Identity = 138/179 (77.09%), Postives = 139/179 (77.65%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV                           
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVE-------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                       ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAP
Sbjct: 61  ------------ENICKFAKKGLTPSQIGVILRDSHGIAQVNSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

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BLAST of Spg023997 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.0e-65
Identity = 133/179 (74.30%), Postives = 137/179 (76.54%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQD                            
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQD---------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                     V E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAP
Sbjct: 61  ----------VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

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BLAST of Spg023997 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.5e-65
Identity = 133/179 (74.30%), Postives = 137/179 (76.54%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISSQD                            
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQD---------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                     V E ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP
Sbjct: 61  ----------VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

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BLAST of Spg023997 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 7.7e-65
Identity = 132/179 (73.74%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QD                            
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQD---------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                     V E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAP
Sbjct: 61  ----------VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

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BLAST of Spg023997 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.1e-58
Identity = 122/179 (68.16%), Postives = 128/179 (71.51%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK ++ DV                           
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVE-------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                       E I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAP
Sbjct: 61  ------------EMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKY
Sbjct: 121 EIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKY 141

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BLAST of Spg023997 vs. ExPASy TrEMBL
Match: A0A0L9TQF8 (Ribosomal_S13_N domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g220300 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.2e-68
Identity = 143/178 (80.34%), Postives = 147/178 (82.58%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISSQDV        FY+ +  C           
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDV-------AFYLSIYLCS---------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                  I+ V ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP
Sbjct: 61  ------KIMFVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 179
           EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 155

[Close]

BLAST of Spg023997 vs. ExPASy TrEMBL
Match: A0A2P5YB27 (Ribosomal_S13_N domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA07838 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 4.5e-68
Identity = 143/180 (79.44%), Postives = 153/180 (85.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPR-LAFVFYVCMMFCDCAVLEHINA 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQDV + +  +   Y          L+++  
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVVLEKHESLKPYYKQNPPRSLQLDYLPR 60

Query: 61  LEIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 120
             ++  P   +V ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA
Sbjct: 61  RYVELSP--SKVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLA 120

Query: 121 PEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           PEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 PEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 178

[Close]

BLAST of Spg023997 vs. ExPASy TrEMBL
Match: A0A6J1KV63 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.3e-67
Identity = 141/179 (78.77%), Postives = 141/179 (78.77%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                            
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                     VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP
Sbjct: 61  ----------VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of Spg023997 vs. ExPASy TrEMBL
Match: A0A6J1HJL3 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.3e-67
Identity = 141/179 (78.77%), Postives = 141/179 (78.77%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                            
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                     VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP
Sbjct: 61  ----------VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of Spg023997 vs. ExPASy TrEMBL
Match: A0A6J1CQC4 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.3e-67
Identity = 141/179 (78.77%), Postives = 141/179 (78.77%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSQD                            
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQD---------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                     VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP
Sbjct: 61  ----------VAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of Spg023997 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 250.4 bits (638), Expect = 1.4e-66
Identity = 133/179 (74.30%), Postives = 137/179 (76.54%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGISASALPYKR+ PSWLK +SQD                            
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQD---------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                     V E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAP
Sbjct: 61  ----------VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

[Close]

BLAST of Spg023997 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 248.4 bits (633), Expect = 5.5e-66
Identity = 132/179 (73.74%), Postives = 136/179 (75.98%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVRIPRLAFVFYVCMMFCDCAVLEHINAL 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QD                            
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQD---------------------------- 60

Query: 61  EIDGFPLIIQVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAP 120
                     V E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAP
Sbjct: 61  ----------VDESICKFAKKGLTPSQIGVILRDSHGIPQVKSVTGSKILRILKAHGLAP 120

Query: 121 EIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 180
           EIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY
Sbjct: 121 EIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 141

The following BLAST results are available for this feature:

BLAST of Spg023997 vs. NCBI nr


Match Name	E-value	Identity	Description
KOM32647.1	2.5e-68	80.34	hypothetical protein LR48_Vigan01g220300 [Vigna angularis]	[more]
PPS12785.1	9.4e-68	79.44	hypothetical protein GOBAR_AA07838 [Gossypium barbadense]	[more]
XP_022143980.1	4.6e-67	78.77	40S ribosomal protein S13-like [Momordica charantia] >XP_022959507.1 40S ribosom...	[more]
XP_020977293.1	6.1e-67	77.78	40S ribosomal protein S13 isoform X2 [Arachis ipaensis] >XP_025628670.1 40S ribo...	[more]
XP_028954044.1	7.9e-67	78.77	LOW QUALITY PROTEIN: 40S ribosomal protein S13 [Malus domestica]	[more]

BLAST of Spg023997 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.5e-68	77.09	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59224	2.0e-65	74.30	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	3.5e-65	74.30	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	7.7e-65	73.74	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
Q69UI1	1.1e-58	68.16	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of Spg023997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0L9TQF8	1.2e-68	80.34	Ribosomal_S13_N domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48...	[more]
A0A2P5YB27	4.5e-68	79.44	Ribosomal_S13_N domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOB...	[more]
A0A6J1KV63	2.3e-67	78.77	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111498990 PE=3 ...	[more]
A0A6J1HJL3	2.3e-67	78.77	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111464161 PE=...	[more]
A0A6J1CQC4	2.3e-67	78.77	40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111013762 PE...	[more]

BLAST of Spg023997 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	1.4e-66	74.30	ribosomal protein S13A	[more]
AT3G60770.1	5.5e-66	73.74	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 108..187 e-value: 2.2E-12 score: 57.1
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 112..179 e-value: 1.8E-14 score: 53.7
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 136..166
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 108..179 e-value: 2.19053E-27 score: 98.3442
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..98 e-value: 2.7E-21 score: 86.8
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 70..98 e-value: 2.6E-11 score: 43.4 coord: 1..33 e-value: 1.1E-12 score: 47.9
None	No IPR available	GENE3D	4.10.860.130		coord: 73..120 e-value: 6.7E-29 score: 101.4
None	No IPR available	GENE3D	1.10.287.10		coord: 121..185 e-value: 7.2E-36 score: 124.3
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..34
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 70..181
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..34 coord: 70..181
IPR023029	Ribosomal protein S15P	HAMAP	MF_01343_A	Ribosomal_S15_A	coord: 3..187 score: 27.872381
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 104..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023997.1	Spg023997.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome