Spg023520 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg023520
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ubiquitin-related modifier 1 homolog
Location	scaffold13: 8254169 .. 8256281 (+)
RNA-Seq Expression	Spg023520
Synteny	Spg023520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTAGAGTTCAGCAGAAGGGAATTGAAAATGCAACTGACCCTTGAATTTGGGTAACTCTCTCTCTCTCCCTGAATTTATTGAATTTTACTCGGAAGGTACTGGGTGTAAAATTTTAGTTGATTTTGTTTCTGGGATACTTGGAAATCAGAAGAAATATTAGATCGCATTCTTTCGTGTTTTGTGTGTTTTTCCGCAGCATGTAAACTTGAATTGTTCTAGCGTTGTTTCTCCGTGAATATAGATTGTTTTCTGAATTTGGGCAAACTCTCAAGTCCATGAATTATCGTGATATTGCTTTTGGGGGTATTCTTCTGGGGCTGGCTCTGGAGAGAGGATAAGATTGACTATTGGATATAATTGTTTTTGTTTAGTTGTCAATAATTCAGAATTTGCACGCTTTCTAGAGATATTCGAACAAACAGAAAATTTTGCTTGAATAATCTGTTGCTTCTTTGCCCCATTTTGTAGTTTTTCTGGTTTTTTTTGGACACCGTGTGGGTGGGGGATTGGAACCTCTTGGTCATTAATATAAGCTTTATTCCAGTTGAGCTATTTTGATGTTGGCGTAATTATTCTGGTTTTGTTCATTTTATTAACGTAGGTTTTTGAAGCATGTTGCATGCGCCACTTTGTCAATTATGCTCAATTGTTATTTTAGTGGATTTTCGATAGATTTGGAAGGTCTTAACCGTATCACTTCTCTTAACTTTTGGTTTCATGCACTGTCTACAATGCCTGCAAATCTTTGACCTCATCAGGACTCTCTATTTCCTCCTCCCTACCAAAACCAAAAAAAGAAGGAAAAAGAACCATAAACATGAAAGGGAGAATATATCAATGAAGATAAATTTACAAAGTATGTCATTTGTTAGGTTTATATGATGGACATGACAGTAATGTTAACCTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTAAAGATACATAATGTCAGCATCGACCCTGAAAATGGAGCGGGAAAGGTAAACTATATTTCCCAACAAGTTAATGAAAGATCCTAGTCGATGTCAAATTCATATTTTCCTGTTTCACCTCTCATCTCTCTGTTTATCGATCGAGTCTAATCTTTTCCTTTAAATCGCTTCTCAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGCACTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACCATGTAAGTACAAGAAACTTCTCACTACTTTGCCATTTATCTTTTGTACTGTTAAGCAAGTATAAAGATGTACTACTAACTTATCAAGGAGAGAAGGAAATGAAAGTAGGAATGAGGAAAACATTTGTGAAGAAATGGGGCTTGATCTCAATTAAAAAATCCTGCTGAGTATTAAGTTTGTAGCTAATAATATCATGGCCTCAAATGTCCTGCAGTAGACCTGGTGTTCTGGTTCTTGTAAATGATTGTGATTGGGAGCTCAGTGGGCAGCTTGACACAACATTGGAAGAGAAAGATGTGGTAGTGTTCATATCCACCTTGCATGGAGGCTAACTTGATCAGGAATATGTCTTTTTCAGCTTGTATCTACTAAATATTTGTCTGAGATAATATGGTACTCGGGCATTTTAACCTTAAAAATCTGAAACTTTCCTGAAATTTGTCCGACCATATGATATGGACATTGTTACCTCATATATATACGTGGTAATCATGAACAGATTTTGCTCTGGCGAGGCATGTGAAATAATTTCTGTGGGTGGATATTGATGTTGAATAACTGAAGAGAGGAAAAGAAATGCATTATAGGAAATGTTTCACAACTCTCTGGTTAGTTTTATTCAAGTTCCTATTGTTAAATATCTGTTTCAAGCATATGTGAAAAAACTTGCTGATTCCAACATTGTGAAATCAGAAACTTCTTGTTGATTCCATTTTAGTTGTTCATTCCCAGTCCCACATCCAAATTCAATACAAAGAGGACAATCCTTCTTTACTTTTGAAGGAAATTTAGAAAATTTGTCCAATTTTGCAAATGAAAAGATTGGATACTAGTCATCCTTGGATTGTTATTGTGTAATTTATTAATGTTTCTTTGTAATCTCCCAATTTATTCTCTTTTTTTTTTTACA

mRNA sequence

GTTTTAGAGTTCAGCAGAAGGGAATTGAAAATGCAACTGACCCTTGAATTTGGGTTTTTGAAGCATGTTTATATGATGGACATGACAGTAATGTTAACCTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTAAAGATACATAATGTCAGCATCGACCCTGAAAATGGAGCGGGAAAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGCACTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACCATTAGACCTGGTGTTCTGGTTCTTGTAAATGATTGTGATTGGGAGCTCAGTGGGCAGCTTGACACAACATTGGAAGAGAAAGATGTGGTAGTGTTCATATCCACCTTGCATGGAGGCTAA

Coding sequence (CDS)

GTTTTAGAGTTCAGCAGAAGGGAATTGAAAATGCAACTGACCCTTGAATTTGGGTTTTTGAAGCATGTTTATATGATGGACATGACAGTAATGTTAACCTTTAAATGCAGTGGGGGATTGGAGTTACTATGTGACTCTGTAAAGATACATAATGTCAGCATCGACCCTGAAAATGGAGCGGGAAAGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGCACTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACCATTAGACCTGGTGTTCTGGTTCTTGTAAATGATTGTGATTGGGAGCTCAGTGGGCAGCTTGACACAACATTGGAAGAGAAAGATGTGGTAGTGTTCATATCCACCTTGCATGGAGGCTAA

Protein sequence

VLEFSRRELKMQLTLEFGFLKHVYMMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG

Homology

[Close]

BLAST of Spg023520 vs. NCBI nr
Match: XP_038876424.1 (ubiquitin-related modifier 1 homolog 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 214.5 bits (545), Expect = 5.2e-52
Identity = 101/104 (97.12%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 25  MMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMF 84
           MMDMTV+LTFKCSGGLELLCDSVKIHNVSIDPENG GKLIMKDLLSWVRTNLIKERPEMF
Sbjct: 1   MMDMTVILTFKCSGGLELLCDSVKIHNVSIDPENGVGKLIMKDLLSWVRTNLIKERPEMF 60

Query: 85  MKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           MKGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  MKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 104

[Close]

BLAST of Spg023520 vs. NCBI nr
Match: KAG7026033.1 (Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 3.7e-50
Identity = 97/104 (93.27%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 25  MMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMF 84
           M+DMTV+L FKCSGGLELLCDSVKIHNVSI+PENGAGKL+MKDLLSWVR+NLIKERPEMF
Sbjct: 1   MVDMTVILMFKCSGGLELLCDSVKIHNVSINPENGAGKLVMKDLLSWVRSNLIKERPEMF 60

Query: 85  MKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           MKGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  MKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 104

[Close]

BLAST of Spg023520 vs. NCBI nr
Match: XP_022145475.1 (ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia])

HSP 1 Score: 208.0 bits (528), Expect = 4.9e-50
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 26  MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 85
           MDMT++L FKCSGGLELLC+SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM
Sbjct: 1   MDMTIVLAFKCSGGLELLCNSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 60

Query: 86  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           KGDT+RPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 103

[Close]

BLAST of Spg023520 vs. NCBI nr
Match: KAA0040023.1 (ubiquitin-related modifier 1-like protein 2 [Cucumis melo var. makuwa] >TYK24478.1 ubiquitin-related modifier 1-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 204.9 bits (520), Expect = 4.1e-49
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 26  MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 85
           MDMT+ L FKCSGGLELLC+SVKIHNVSIDPENG GKLIMKDLLSWVR NLIKERPEMFM
Sbjct: 1   MDMTLTLDFKCSGGLELLCNSVKIHNVSIDPENGVGKLIMKDLLSWVRANLIKERPEMFM 60

Query: 86  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           KGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]

BLAST of Spg023520 vs. NCBI nr
Match: XP_038876423.1 (ubiquitin-related modifier 1 homolog 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 193.7 bits (491), Expect = 9.5e-46
Identity = 97/118 (82.20%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 11  MQLTLEFGFLKHVYMMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLS 70
           MQLTLEFG                   GGLELLCDSVKIHNVSIDPENG GKLIMKDLLS
Sbjct: 1   MQLTLEFG-------------------GGLELLCDSVKIHNVSIDPENGVGKLIMKDLLS 60

Query: 71  WVRTNLIKERPEMFMKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           WVRTNLIKERPEMFMKGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  WVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]

BLAST of Spg023520 vs. ExPASy Swiss-Prot
Match: B3H7G2 (Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.6e-41
Identity = 85/118 (72.03%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 11  MQLTLEFGFLKHVYMMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLS 70
           MQ TLEFG                   GGLELLCDSVKIH V+I+  N +  L MKDLLS
Sbjct: 1   MQFTLEFG-------------------GGLELLCDSVKIHKVNINLLNDSDILTMKDLLS 60

Query: 71  WVRTNLIKERPEMFMKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           WVRTNLIKERPEMFMKGDT+RPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 61  WVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]

BLAST of Spg023520 vs. ExPASy Swiss-Prot
Match: A0MDQ1 (Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1 PE=3 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-39
Identity = 84/120 (70.00%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 11  MQLTLEFGFLKHVYMMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGK--LIMKDL 70
           MQLTLEFG                   GGLELLCDS KIH V++D  NGA      MK L
Sbjct: 1   MQLTLEFG-------------------GGLELLCDSEKIHKVNVDLPNGADSDDFTMKHL 60

Query: 71  LSWVRTNLIKERPEMFMKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           LSWVRTNLIKERPEMFMKGDT+RPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 61  LSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

[Close]

BLAST of Spg023520 vs. ExPASy Swiss-Prot
Match: Q7GBC8 (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=URM1 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-35
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 32  LTFKCSGGLELLCD-SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTI 91
           LT +  GGLELL + S K+H V + P +G GK++MK LL+WV++NLIKERPEMF+KGD++
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 92  RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]

BLAST of Spg023520 vs. ExPASy Swiss-Prot
Match: Q0D6M1 (Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=URM1 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.6e-35
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 32  LTFKCSGGLELLCD-SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTI 91
           LT +  GGLELL + S K+H V + P +G GK++MK LL+WV++NLIKERPEMF+KGD++
Sbjct: 3   LTLEFGGGLELLLEKSTKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSV 62

Query: 92  RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  RPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100

[Close]

BLAST of Spg023520 vs. ExPASy Swiss-Prot
Match: B6SXH2 (Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-33
Identity = 68/99 (68.69%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 32  LTFKCSGGLELLCD-SVKIHNVSI-DPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDT 91
           LT +  GGLELL + S K+H V +  P++G GK+ MK LLSWV+ NLIKERPEMF+K D+
Sbjct: 3   LTLEFGGGLELLLENSTKVHKVEVTTPKDGQGKVTMKFLLSWVKENLIKERPEMFLKADS 62

Query: 92  IRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           +RPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Sbjct: 63  VRPGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 101

[Close]

BLAST of Spg023520 vs. ExPASy TrEMBL
Match: A0A6J1CUK8 (Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014914 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-50
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 26  MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 85
           MDMT++L FKCSGGLELLC+SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM
Sbjct: 1   MDMTIVLAFKCSGGLELLCNSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 60

Query: 86  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           KGDT+RPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 103

[Close]

BLAST of Spg023520 vs. ExPASy TrEMBL
Match: A0A5D3DLM7 (Ubiquitin-related modifier 1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00190 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.0e-49
Identity = 96/103 (93.20%), Postives = 99/103 (96.12%), Query Frame = 0


Query: 26  MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 85
           MDMT+ L FKCSGGLELLC+SVKIHNVSIDPENG GKLIMKDLLSWVR NLIKERPEMFM
Sbjct: 1   MDMTLTLDFKCSGGLELLCNSVKIHNVSIDPENGVGKLIMKDLLSWVRANLIKERPEMFM 60

Query: 86  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           KGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]

BLAST of Spg023520 vs. ExPASy TrEMBL
Match: A0A0A0KCT7 (Ubiquitin-related modifier 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G075130 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.6e-49
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 26  MDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFM 85
           MDMT++L FKCSGGLELLC+SVKIHNVSIDPENG GK IMKDLLSWVR+NLIKERPEMFM
Sbjct: 1   MDMTLILDFKCSGGLELLCNSVKIHNVSIDPENGVGKFIMKDLLSWVRSNLIKERPEMFM 60

Query: 86  KGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           KGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  KGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 103

[Close]

BLAST of Spg023520 vs. ExPASy TrEMBL
Match: A0A6J1CWE9 (Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014914 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.0e-45
Identity = 90/97 (92.78%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 32  LTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTIR 91
           LT +  GGLELLC+SVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDT+R
Sbjct: 3   LTLEFGGGLELLCNSVKIHNVSIDPENGAGKLIMKDLLSWVRTNLIKERPEMFMKGDTVR 62

Query: 92  PGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           PGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Sbjct: 63  PGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG 99

[Close]

BLAST of Spg023520 vs. ExPASy TrEMBL
Match: A0A6J1KGQ8 (Ubiquitin-related modifier 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494196 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.6e-45
Identity = 94/118 (79.66%), Postives = 98/118 (83.05%), Query Frame = 0


Query: 11  MQLTLEFGFLKHVYMMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLS 70
           MQLTLEFG                   GGLELLCDSVKIHNVSI+PENG GKL+MKDLLS
Sbjct: 1   MQLTLEFG-------------------GGLELLCDSVKIHNVSINPENGVGKLVMKDLLS 60

Query: 71  WVRTNLIKERPEMFMKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           WVR+NLIKERPEMFMKGDT+RPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG
Sbjct: 61  WVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 99

[Close]

BLAST of Spg023520 vs. TAIR 10
Match: AT3G61113.1 (Ubiquitin related modifier 1 )

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-42
Identity = 85/118 (72.03%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 11  MQLTLEFGFLKHVYMMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGKLIMKDLLS 70
           MQ TLEFG                   GGLELLCDSVKIH V+I+  N +  L MKDLLS
Sbjct: 1   MQFTLEFG-------------------GGLELLCDSVKIHKVNINLLNDSDILTMKDLLS 60

Query: 71  WVRTNLIKERPEMFMKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           WVRTNLIKERPEMFMKGDT+RPGVLVLVNDCDWELSGQLDTTLE+KDV+VFISTLHGG
Sbjct: 61  WVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTTLEDKDVIVFISTLHGG 99

[Close]

BLAST of Spg023520 vs. TAIR 10
Match: AT2G45695.1 (Ubiquitin related modifier 1 )

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-40
Identity = 84/120 (70.00%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 11  MQLTLEFGFLKHVYMMDMTVMLTFKCSGGLELLCDSVKIHNVSIDPENGAGK--LIMKDL 70
           MQLTLEFG                   GGLELLCDS KIH V++D  NGA      MK L
Sbjct: 1   MQLTLEFG-------------------GGLELLCDSEKIHKVNVDLPNGADSDDFTMKHL 60

Query: 71  LSWVRTNLIKERPEMFMKGDTIRPGVLVLVNDCDWELSGQLDTTLEEKDVVVFISTLHGG 129
           LSWVRTNLIKERPEMFMKGDT+RPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHGG
Sbjct: 61  LSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTVIEDKDVVVFISTLHGG 101

The following BLAST results are available for this feature:

BLAST of Spg023520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876424.1	5.2e-52	97.12	ubiquitin-related modifier 1 homolog 2 isoform X2 [Benincasa hispida]	[more]
KAG7026033.1	3.7e-50	93.27	Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_022145475.1	4.9e-50	94.17	ubiquitin-related modifier 1 homolog 2 isoform X1 [Momordica charantia]	[more]
KAA0040023.1	4.1e-49	93.20	ubiquitin-related modifier 1-like protein 2 [Cucumis melo var. makuwa] >TYK24478...	[more]
XP_038876423.1	9.5e-46	82.20	ubiquitin-related modifier 1 homolog 2 isoform X1 [Benincasa hispida]	[more]

BLAST of Spg023520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H7G2	5.6e-41	72.03	Ubiquitin-related modifier 1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=URM1-2...	[more]
A0MDQ1	1.8e-39	70.00	Ubiquitin-related modifier 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=URM1-1...	[more]
Q7GBC8	1.6e-35	69.39	Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. indica OX=39946 GN=U...	[more]
Q0D6M1	1.6e-35	69.39	Ubiquitin-related modifier 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
B6SXH2	4.3e-33	68.69	Ubiquitin-related modifier 1 homolog OS=Zea mays OX=4577 GN=URM1 PE=3 SV=1	[more]

BLAST of Spg023520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUK8	2.4e-50	94.17	Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A5D3DLM7	2.0e-49	93.20	Ubiquitin-related modifier 1 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KCT7	2.6e-49	92.23	Ubiquitin-related modifier 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_6G075130 ...	[more]
A0A6J1CWE9	3.0e-45	92.78	Ubiquitin-related modifier 1 homolog OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1KGQ8	6.6e-45	79.66	Ubiquitin-related modifier 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494196...	[more]

BLAST of Spg023520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61113.1	4.0e-42	72.03	Ubiquitin related modifier 1	[more]
AT2G45695.1	1.3e-40	70.00	Ubiquitin related modifier 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015221	Ubiquitin-related modifier 1	PFAM	PF09138	Urm1	coord: 32..128 e-value: 1.2E-33 score: 115.3
IPR015221	Ubiquitin-related modifier 1	PANTHER	PTHR14986	RURM1 PROTEIN	coord: 28..128
IPR015221	Ubiquitin-related modifier 1	HAMAP	MF_03048	Urm1	coord: 30..128 score: 33.227036
IPR015221	Ubiquitin-related modifier 1	CDD	cd01764	Ubl_Urm1	coord: 32..128 e-value: 5.37018E-46 score: 142.28
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 26..128 e-value: 7.1E-35 score: 121.3
IPR016155	Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp	SUPERFAMILY	54285	MoaD/ThiS	coord: 22..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg023520.1	Spg023520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032447	protein urmylation
biological_process	GO:0034227	tRNA thio-modification
biological_process	GO:0002098	tRNA wobble uridine modification
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0031386	protein tag