Spg023208 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGAAGGGTTGGGGTTTTGTTTTGGTGTTATGGATGGCGTTGGTTGTAGGCGTTGGCGCCAAGGTTGCAGAGGAGGAAACAGTTACATCGGCAGCTCCAAACTCCTACTGGGAGGAGCTTCGAAAGCTGCTCAATACAGTCTCCGCCTATCTCTTCCCTCCCAAAATAGAGTCAGTCTTGTTGACTAATTAATTAATTAATTTGATTTCTTTTGTTTGGTTTTTACATTTTTACATTTACTAATTACTAATTGAGGAGTGGCGTTGGGTTTTAGTTTCCGACCAGGTAAACCCGTGGAAGATGGAGTGAATGGGAACATGAAGGAAGCCCTTACCAAGAGCTTCGAGACGACCAAACAAATCGTGGAGGATTCCGCCAAGGCTGCCGCCGAAACTCTTCAACAACAGCCTGAGCCTCCACAACAACCACATACAGAACTCTAG ATGGAGAAGGGTTGGGGTTTTGTTTTGGTGTTATGGATGGCGTTGGTTGTAGGCGTTGGCGCCAAGGTTGCAGAGGAGGAAACAGTTACATCGGCAGCTCCAAACTCCTACTGGGAGGAGCTTCGAAAGCTGCTCAATACAGTCTCCGCCTATCTCTTCCCTCCCAAAATAGATTTCCGACCAGGTAAACCCGTGGAAGATGGAGTGAATGGGAACATGAAGGAAGCCCTTACCAAGAGCTTCGAGACGACCAAACAAATCGTGGAGGATTCCGCCAAGGCTGCCGCCGAAACTCTTCAACAACAGCCTGAGCCTCCACAACAACCACATACAGAACTCTAG ATGGAGAAGGGTTGGGGTTTTGTTTTGGTGTTATGGATGGCGTTGGTTGTAGGCGTTGGCGCCAAGGTTGCAGAGGAGGAAACAGTTACATCGGCAGCTCCAAACTCCTACTGGGAGGAGCTTCGAAAGCTGCTCAATACAGTCTCCGCCTATCTCTTCCCTCCCAAAATAGATTTCCGACCAGGTAAACCCGTGGAAGATGGAGTGAATGGGAACATGAAGGAAGCCCTTACCAAGAGCTTCGAGACGACCAAACAAATCGTGGAGGATTCCGCCAAGGCTGCCGCCGAAACTCTTCAACAACAGCCTGAGCCTCCACAACAACCACATACAGAACTCTAG MEKGWGFVLVLWMALVVGVGAKVAEEETVTSAAPNSYWEELRKLLNTVSAYLFPPKIDFRPGKPVEDGVNGNMKEALTKSFETTKQIVEDSAKAAAETLQQQPEPPQQPHTEL Homology
BLAST of Spg023208 vs. NCBI nr
Match: KAG6571257.1 (hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571261.1 hypothetical protein SDJN03_30176, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23 Identity = 74/119 (62.18%), Postives = 84/119 (70.59%), Query Frame = 0
BLAST of Spg023208 vs. NCBI nr
Match: KAG6571254.1 (hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 118.6 bits (296), Expect = 3.4e-23 Identity = 73/119 (61.34%), Postives = 83/119 (69.75%), Query Frame = 0
BLAST of Spg023208 vs. NCBI nr
Match: KAG6571255.1 (hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571258.1 hypothetical protein SDJN03_30173, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 117.9 bits (294), Expect = 5.8e-23 Identity = 73/119 (61.34%), Postives = 84/119 (70.59%), Query Frame = 0
BLAST of Spg023208 vs. NCBI nr
Match: KAG6571256.1 (hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 115.5 bits (288), Expect = 2.9e-22 Identity = 72/119 (60.50%), Postives = 83/119 (69.75%), Query Frame = 0
BLAST of Spg023208 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata]) HSP 1 Score: 114.0 bits (284), Expect = 8.4e-22 Identity = 67/109 (61.47%), Postives = 78/109 (71.56%), Query Frame = 0
BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A6J1G9K3 (uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC111452199 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 4.1e-22 Identity = 67/109 (61.47%), Postives = 78/109 (71.56%), Query Frame = 0
BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A5A7VE77 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00220 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 4.5e-21 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 0
BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A1S3CDE0 (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 4.5e-21 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 0
BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A0A0L904 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20 Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0
BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A6J1D2A4 (uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016933 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12 Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 0
BLAST of Spg023208 vs. TAIR 10
Match: AT1G16850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.0 bits (123), Expect = 3.7e-07 Identity = 34/103 (33.01%), Postives = 49/103 (47.57%), Query Frame = 0
BLAST of Spg023208 vs. TAIR 10
Match: AT5G64820.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 45.1 bits (105), Expect = 4.5e-05 Identity = 22/70 (31.43%), Postives = 38/70 (54.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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