Spg023208 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023208
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionBnaAnng13040D protein
Locationscaffold13: 610780 .. 611225 (-)
RNA-Seq ExpressionSpg023208
SyntenySpg023208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGGTTGGGGTTTTGTTTTGGTGTTATGGATGGCGTTGGTTGTAGGCGTTGGCGCCAAGGTTGCAGAGGAGGAAACAGTTACATCGGCAGCTCCAAACTCCTACTGGGAGGAGCTTCGAAAGCTGCTCAATACAGTCTCCGCCTATCTCTTCCCTCCCAAAATAGAGTCAGTCTTGTTGACTAATTAATTAATTAATTTGATTTCTTTTGTTTGGTTTTTACATTTTTACATTTACTAATTACTAATTGAGGAGTGGCGTTGGGTTTTAGTTTCCGACCAGGTAAACCCGTGGAAGATGGAGTGAATGGGAACATGAAGGAAGCCCTTACCAAGAGCTTCGAGACGACCAAACAAATCGTGGAGGATTCCGCCAAGGCTGCCGCCGAAACTCTTCAACAACAGCCTGAGCCTCCACAACAACCACATACAGAACTCTAG

mRNA sequence

ATGGAGAAGGGTTGGGGTTTTGTTTTGGTGTTATGGATGGCGTTGGTTGTAGGCGTTGGCGCCAAGGTTGCAGAGGAGGAAACAGTTACATCGGCAGCTCCAAACTCCTACTGGGAGGAGCTTCGAAAGCTGCTCAATACAGTCTCCGCCTATCTCTTCCCTCCCAAAATAGATTTCCGACCAGGTAAACCCGTGGAAGATGGAGTGAATGGGAACATGAAGGAAGCCCTTACCAAGAGCTTCGAGACGACCAAACAAATCGTGGAGGATTCCGCCAAGGCTGCCGCCGAAACTCTTCAACAACAGCCTGAGCCTCCACAACAACCACATACAGAACTCTAG

Coding sequence (CDS)

ATGGAGAAGGGTTGGGGTTTTGTTTTGGTGTTATGGATGGCGTTGGTTGTAGGCGTTGGCGCCAAGGTTGCAGAGGAGGAAACAGTTACATCGGCAGCTCCAAACTCCTACTGGGAGGAGCTTCGAAAGCTGCTCAATACAGTCTCCGCCTATCTCTTCCCTCCCAAAATAGATTTCCGACCAGGTAAACCCGTGGAAGATGGAGTGAATGGGAACATGAAGGAAGCCCTTACCAAGAGCTTCGAGACGACCAAACAAATCGTGGAGGATTCCGCCAAGGCTGCCGCCGAAACTCTTCAACAACAGCCTGAGCCTCCACAACAACCACATACAGAACTCTAG

Protein sequence

MEKGWGFVLVLWMALVVGVGAKVAEEETVTSAAPNSYWEELRKLLNTVSAYLFPPKIDFRPGKPVEDGVNGNMKEALTKSFETTKQIVEDSAKAAAETLQQQPEPPQQPHTEL
Homology
BLAST of Spg023208 vs. NCBI nr
Match: KAG6571257.1 (hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571261.1 hypothetical protein SDJN03_30176, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 74/119 (62.18%), Postives = 84/119 (70.59%), Query Frame = 0

Query: 4   GWGFVLVLWMALVVGVGAKVAE-----EETV-----TSAA-----PNSYWEELRKLLNTV 63
           G+  VLVLWM +VVGVG    E     EETV      SAA     PNSYWEE+RK++N  
Sbjct: 6   GFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRA 65

Query: 64  SAYLFPPKIDFRPGKPVEDG-VNG--NMKEALTKSFETTKQIVEDSAKAAAETLQQQPE 105
              LFPPKIDFR G PVEDG VNG  NMKE++TKSF TTKQ+VEDSAKAAA+TLQ QP+
Sbjct: 66  VTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLQPQPD 124

BLAST of Spg023208 vs. NCBI nr
Match: KAG6571254.1 (hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-23
Identity = 73/119 (61.34%), Postives = 83/119 (69.75%), Query Frame = 0

Query: 4   GWGFVLVLWMALVVGVGAKVAE-----EETV-----TSAA-----PNSYWEELRKLLNTV 63
           G+  VLVLWM +VVGVG    E     EE V      SAA     PNSYWEE+RK++N  
Sbjct: 6   GFVLVLVLWMVVVVGVGKADEEAQNNIEEIVGRVISASAASSPSPPNSYWEEVRKVVNRA 65

Query: 64  SAYLFPPKIDFRPGKPVEDG-VNG--NMKEALTKSFETTKQIVEDSAKAAAETLQQQPE 105
              LFPPKIDFRPG PVEDG VNG  NMKE++TKSF TTKQ+VEDSA AAA+TLQ QP+
Sbjct: 66  VTCLFPPKIDFRPGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSANAAAQTLQPQPD 124

BLAST of Spg023208 vs. NCBI nr
Match: KAG6571255.1 (hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sororia] >KAG6571258.1 hypothetical protein SDJN03_30173, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-23
Identity = 73/119 (61.34%), Postives = 84/119 (70.59%), Query Frame = 0

Query: 4   GWGFVLVLWMALVVGVGAKVAE-----EETV-----TSAA-----PNSYWEELRKLLNTV 63
           G+  VLVLWM +VVGVG    E     EETV      SAA     PNSYWEE+RK++N  
Sbjct: 6   GFVLVLVLWMVVVVGVGKADDEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRA 65

Query: 64  SAYLFPPKIDFRPGKPVEDG-VNG--NMKEALTKSFETTKQIVEDSAKAAAETLQQQPE 105
              LFPPKIDFR G PVEDG VNG  NMKE++TKSF TTKQ+V+DSAKAAA+TLQ QP+
Sbjct: 66  VTCLFPPKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVKDSAKAAAQTLQPQPD 124

BLAST of Spg023208 vs. NCBI nr
Match: KAG6571256.1 (hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 2.9e-22
Identity = 72/119 (60.50%), Postives = 83/119 (69.75%), Query Frame = 0

Query: 4   GWGFVLVLWMALVVGVGAKVAE-----EETV-----TSAA-----PNSYWEELRKLLNTV 63
           G+  VLVLWM +VVGVG    E     EETV      SAA     PNSYWEE+RK++N  
Sbjct: 6   GFVLVLVLWMVVVVGVGKADEEAQNNIEETVGRVISASAASSPSPPNSYWEEVRKVVNRA 65

Query: 64  SAYLFPPKIDFRPGKPVEDG-VNG--NMKEALTKSFETTKQIVEDSAKAAAETLQQQPE 105
              LFP KIDFR G PVEDG VNG  NMKE++TKSF TTKQ+VEDSAKA+A+TLQ QP+
Sbjct: 66  VTCLFPQKIDFRQGNPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKASAQTLQPQPD 124

BLAST of Spg023208 vs. NCBI nr
Match: XP_022948557.1 (uncharacterized protein LOC111452199 [Cucurbita moschata])

HSP 1 Score: 114.0 bits (284), Expect = 8.4e-22
Identity = 67/109 (61.47%), Postives = 78/109 (71.56%), Query Frame = 0

Query: 13  MALVVGVGAKVAE-----EETV---------TSAAPNSYWEELRKLLNTVSAYLFPPKID 72
           M +VVGVG    E     EETV         +S  PNSYWEE+RK++N     LFPPKID
Sbjct: 1   MVIVVGVGKADEEAPNNIEETVGRVISASAASSPPPNSYWEEVRKVVNRAVTCLFPPKID 60

Query: 73  FRPGKPVEDG-VNG--NMKEALTKSFETTKQIVEDSAKAAAETLQQQPE 105
           FRPGKPVEDG VNG  NMKE++TKSF TTKQ+VEDSAKAAA+TL+ QP+
Sbjct: 61  FRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPD 109

BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A6J1G9K3 (uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC111452199 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.1e-22
Identity = 67/109 (61.47%), Postives = 78/109 (71.56%), Query Frame = 0

Query: 13  MALVVGVGAKVAE-----EETV---------TSAAPNSYWEELRKLLNTVSAYLFPPKID 72
           M +VVGVG    E     EETV         +S  PNSYWEE+RK++N     LFPPKID
Sbjct: 1   MVIVVGVGKADEEAPNNIEETVGRVISASAASSPPPNSYWEEVRKVVNRAVTCLFPPKID 60

Query: 73  FRPGKPVEDG-VNG--NMKEALTKSFETTKQIVEDSAKAAAETLQQQPE 105
           FRPGKPVEDG VNG  NMKE++TKSF TTKQ+VEDSAKAAA+TL+ QP+
Sbjct: 61  FRPGKPVEDGQVNGNENMKESITKSFHTTKQMVEDSAKAAAQTLRPQPD 109

BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A5A7VE77 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00220 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.5e-21
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 0

Query: 8   VLVLWMALVVGV------GAKVAEEETVTSAAPNSYWEELRKLLNTVSAYLFPPKIDFRP 67
           +L+L + ++VG+       A     ET T   PNSYWEE+RK++N   +YLFPPKIDFRP
Sbjct: 15  MLLLLLLILVGIAMANDEAANNVYSETSTPNPPNSYWEEVRKVVNKAYSYLFPPKIDFRP 74

Query: 68  GKPVEDG-----VNGNMKEALTKSFETTKQIVEDSAKAAAETLQQQPEPPQQPHTEL 114
           GK VED       +GN+KEA+TKSFE TK++VEDSAKAAA+TLQ+ P     PH+EL
Sbjct: 75  GKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPP-----PHSEL 126

BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A1S3CDE0 (uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.5e-21
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 0

Query: 8   VLVLWMALVVGV------GAKVAEEETVTSAAPNSYWEELRKLLNTVSAYLFPPKIDFRP 67
           +L+L + ++VG+       A     ET T   PNSYWEE+RK++N   +YLFPPKIDFRP
Sbjct: 15  MLLLLLLILVGIAMANDEAANNVYSETSTPNPPNSYWEEVRKVVNKAYSYLFPPKIDFRP 74

Query: 68  GKPVEDG-----VNGNMKEALTKSFETTKQIVEDSAKAAAETLQQQPEPPQQPHTEL 114
           GK VED       +GN+KEA+TKSFE TK++VEDSAKAAA+TLQ+ P     PH+EL
Sbjct: 75  GKAVEDDSGLSVEDGNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPP-----PHSEL 126

BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A0A0L904 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0

Query: 8   VLVLWMALVVGVGAKVAEE-------ETVTSAAPNSYWEELRKLLNTVSAYLFPPKIDFR 67
           +L+L + ++VG+  K  EE       ET T   PNSYWEE+RK++N    YLFPPKIDFR
Sbjct: 14  MLLLLLLVLVGI-VKANEEAANNIYSETSTPNPPNSYWEEVRKVVNKAYTYLFPPKIDFR 73

Query: 68  PGKPVED--GV-----NGNMKEALTKSFETTKQIVEDSAKAAAETLQQQPEPPQQPHTEL 114
           PGK VED  GV     N N+KEA+TKSFE TK++VEDSAKAAA+TLQ+ P     PH+EL
Sbjct: 74  PGKAVEDDSGVSVKNGNVNVKEAVTKSFEKTKEMVEDSAKAAAQTLQKPP-----PHSEL 127

BLAST of Spg023208 vs. ExPASy TrEMBL
Match: A0A6J1D2A4 (uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016933 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.9e-12
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 28  TVTSAAP----NSYWEELRK-LLNTVSAYLFPPKIDFRPGKPVEDGVNG-----NMKEAL 87
           TVTSAAP      YW+ LR  +L+ + AYLFPPKIDFRPGK  +D   G     N+KEAL
Sbjct: 70  TVTSAAPPCATPHYWDRLRTWVLDPLLAYLFPPKIDFRPGKADDDEDGGGHGNENVKEAL 129

Query: 88  TKSFETTKQIVEDSAKAAAE 98
           TKSF+  KQIV+DSAKAAA+
Sbjct: 130 TKSFDQGKQIVQDSAKAAAD 149

BLAST of Spg023208 vs. TAIR 10
Match: AT1G16850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, leaf whorl, male gametophyte, flower, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64820.1); Has 24 Blast hits to 24 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.7e-07
Identity = 34/103 (33.01%), Postives = 49/103 (47.57%), Query Frame = 0

Query: 15  LVVGVGAKVAEEETVTS-------------AAPNSYWEELRKLLNTVSAYLFPPKIDFRP 74
           L V V A V  E  V S              +  +YW ++R+ L+   ++ FPP   F  
Sbjct: 26  LSVNVSADVDSERAVPSEDKTTTVWLTKIKRSGKNYWAKVRETLDRGQSHFFPPNTYFTG 85

Query: 75  GKPVEDGVNGNMKEALTKSFETTKQIVEDSAKAAAETLQQQPE 105
                 G   NMKEA T+SFE +K  VE++A++AAE +    E
Sbjct: 86  KNDAPMGAGENMKEAATRSFEHSKATVEEAARSAAEVVSDTAE 128

BLAST of Spg023208 vs. TAIR 10
Match: AT5G64820.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.5e-05
Identity = 22/70 (31.43%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 34  PNSYWEELRKLLNTVSAYLFPPKIDFRPGKP----VEDGVNGNMKEALTKSFETTKQIVE 93
           P S WE ++  +  +   L+PP +DFR         E+     ++EA T+S E +K+ +E
Sbjct: 56  PPSSWELIQGAMQKIQMKLYPPNLDFRSNSDKSNIEEEDKAEKVREAATRSLEVSKEAIE 115

Query: 94  DSAKAAAETL 100
           +SAK A + +
Sbjct: 116 ESAKLAGDVV 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6571257.11.5e-2362.18hypothetical protein SDJN03_30172, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571254.13.4e-2361.34hypothetical protein SDJN03_30169, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571255.15.8e-2361.34hypothetical protein SDJN03_30170, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571256.12.9e-2260.50hypothetical protein SDJN03_30171, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022948557.18.4e-2261.47uncharacterized protein LOC111452199 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1G9K34.1e-2261.47uncharacterized protein LOC111452199 OS=Cucurbita moschata OX=3662 GN=LOC1114521... [more]
A0A5A7VE774.5e-2153.85Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3CDE04.5e-2153.85uncharacterized protein LOC103499155 OS=Cucumis melo OX=3656 GN=LOC103499155 PE=... [more]
A0A0A0L9041.3e-2055.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642710 PE=4 SV=1[more]
A0A6J1D2A42.9e-1260.00uncharacterized protein LOC111016933 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
Match NameE-valueIdentityDescription
AT1G16850.13.7e-0733.01unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT5G64820.14.5e-0531.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..113
NoneNo IPR availablePANTHERPTHR35463:SF11BNAC05G12860D PROTEINcoord: 30..102
NoneNo IPR availablePANTHERPTHR35463TRANSMEMBRANE PROTEINcoord: 30..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023208.1Spg023208.1mRNA