Spg023056 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023056
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit 21
Locationscaffold12: 30854910 .. 30857051 (+)
RNA-Seq ExpressionSpg023056
SyntenySpg023056
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTCTGGAATTTTTCTGGGTTTATAGAATAGATGACGGGCGGTCTGAATTTGAAAGAAAAATTCGTGCGCGGTTCATGTTAGCGGCTCACTATGTATTTGATACAGATGCATTGATCCAAAGCATCCATGTAGGGGACATGAAGTTGGGGTATTCTATGCAATGAGTTTGCATAAGACCGGACTACGAAATAGTAACCACTAGATGTAACACTGTTAACTAGTTTAAGTTTCTATTTCAATAGGATGACCTAGGTAACTCAATCTCAATCTTGAGTCTGTTATGAACTCCTTTCAGGAGGGATTGTCCTTAGATTTGTATGGGTGAGAGTGGTCTGTTCGTCGACTCAATAATCCTATCATTTCAGGGGCAAAGATGGAATTCACTCCTTCCCCTATTGGGGTAAGTAGATGTGTGTTCCCTTAAGGGCTGATTTCGGAGCTTGAACAAAAGCGCGCTGTCCTCTCCTGGCCCGAGAGGAATTTCTGTGTAGTGGTTGGACCCTAAATAAGTTGTTCATTAGAGGGATCAGAGGTACTTAAGGATCTAGAGGTAACCCAAGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACAAACACTCGTGAATGATTGACTTATTATATTGGTCGATATCCGTGGACACAAAAATATTCTACAGTGAGAAGAGTGCAGCTGTGGGTCTTTAGTAGAGCGATCCACAGTTAACGAATGTTGATTAACTTGGTTAATGAGTTTAGCCAGTTAATCTCATGTCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCACTCCACCTGCTAGCTCGTAACGGGTATTGAGATAATATAGTCTTGAATATTAAGGGAATTTTAGTTAATTGTATTTGATGCAATTAATATAACGTATGGAGATACATTATAGTATAAGTTTAATTAGTGAATTAAACTTTATAATAAAATTAATTTTGGATGTGATTCCAAATTAATTAACGAGAGAATTATATATTTGAAGGAGTTCAAATATTAAATGTGAATTGGATTCATATTTAACTATAGGTTAAAATAATATGAATAGGGATTCATATTAAAACTATAGTATATGAGAGAATTATGAATCTAATTAAATATGTGATATTTGATTAATTCATAAATTAATTAATTTAATTTAATTTGGTTAAATGTGATCTAATCAAATTAATTTTATAGTTAATAATTAATGTACATTTGATGCACATTAAAACTATAGGTTAAATGAGAGAGTTACATTTGAATTTGATTCAATTGTAAAATTAATTAGGTATATGATATTTAATTAATGTGGGGAAACAATTAATTCAGAATTAATTGATTGGCCTAATTAATTCAATTAAATATCATTTGATTGAATTAAAACTATATGATAAAATTAATTTAATAATAAATTGTTGTAATTAAATTAATTTGTTTCATAACATATAGTTAAATGGATAGTTAATTATTATATGATAATAATTAACGGTCCAGATCTAATTGATTTAGATCAAATGGCCAGGATTGGTTAGGGAAGTTAATTGTAACCTCCCAACCTATTCATACGTGGTTTCCTAATGGGTTGCCGGTTACTCTCTCATTCCAACGTGATTTACAGAAAAAAAAAAAGGATCTCTCTCTCTCTCACAAATTCTCTCTCCAAAAATACAGCCATTGTTGGCTGCAACTTTCCTTCAAGACGTTGTTTTGGTTCCCACAAGCCAAAATCTCAGCAATCCAAGAGGATAGCGAGTGTCCGTGGTGGTGGTGTTCGTTGGGAGAAGAAAGTACGTGAATTGGAGCATCGTGCTATTTTCGGTCTTCAATTCGTGTAAGTACTCCAAATCTAAATTGTTTAGATTACTTTTCCTGTATGCTTAATCTAGTACATAGAAATAGTTTCTGTTTTGCCAACGTATTAGTTTTTCTTAATTGAAATTCAATTCGAGTTTGGTCTAGATTGTTTCCGCTGCCAAAGAAATTTTAATCCTTCAGCTTTAGCTTTCATCACATTTGAGACATTACAAAGATATACTCATCCAATTCGCTTATCCCCTAATTACCCCGGACCGCCATCTCACAAACCTATAGAGAACCGTACAAATATTGGGCAGCTAAGCATGTGTGAATTATTTATTCGATGTGATTGA

mRNA sequence

ATGTTTCTGGAATTTTTCTGGGTTTATAGAATAGATGACGGGCGGTCTGAATTTGAAAGAAAAATTCGTGCGCGGTTCATGTTAGCGGCTCACTATGTATTTGATACAGATGCATTGATCCAAAGCATCCATCCAAAATCTCAGCAATCCAAGAGGATAGCGAGTGTCCGTGGTGGTGGTGTTCGTTGGGAGAAGAAAGTACGTGAATTGGAGCATCGTGCTATTTTCGGTCTTCAATTCGTAAATTTTAATCCTTCAGCTTTAGCTTTCATCACATTTGAGACATTACAAAGATATACTCATCCAATTCGCTTATCCCCTAATTACCCCGGACCGCCATCTCACAAACCTATAGAGAACCGTACAAATATTGGGCAGCTAAGCATGTGTGAATTATTTATTCGATGTGATTGA

Coding sequence (CDS)

ATGTTTCTGGAATTTTTCTGGGTTTATAGAATAGATGACGGGCGGTCTGAATTTGAAAGAAAAATTCGTGCGCGGTTCATGTTAGCGGCTCACTATGTATTTGATACAGATGCATTGATCCAAAGCATCCATCCAAAATCTCAGCAATCCAAGAGGATAGCGAGTGTCCGTGGTGGTGGTGTTCGTTGGGAGAAGAAAGTACGTGAATTGGAGCATCGTGCTATTTTCGGTCTTCAATTCGTAAATTTTAATCCTTCAGCTTTAGCTTTCATCACATTTGAGACATTACAAAGATATACTCATCCAATTCGCTTATCCCCTAATTACCCCGGACCGCCATCTCACAAACCTATAGAGAACCGTACAAATATTGGGCAGCTAAGCATGTGTGAATTATTTATTCGATGTGATTGA

Protein sequence

MFLEFFWVYRIDDGRSEFERKIRARFMLAAHYVFDTDALIQSIHPKSQQSKRIASVRGGGVRWEKKVRELEHRAIFGLQFVNFNPSALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQLSMCELFIRCD
Homology
[Close]
BLAST of Spg023056 vs. NCBI nr
Match: XP_038893979.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] >XP_038893980.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 58.2 bits (139), Expect = 6.7e-05
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 0 

Query: 86  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ 127
           +ALAF TF TLQR   P+RLSPNYP PPSH+P E+  NI +
Sbjct: 15  AALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAE 55

[Close]
BLAST of Spg023056 vs. NCBI nr
Match: XP_038902781.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 55.1 bits (131), Expect = 5.6e-04
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 86  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ 127
           +ALAF TF TLQR   P+RLSPNYP PPS +P E+  NI +
Sbjct: 15  AALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSANIAE 55

[Close]
BLAST of Spg023056 vs. NCBI nr
Match: KAG6605829.1 (Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-04
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 86  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ 127
           +ALAF TF TLQR   P+RLSPNYP PP H+P E+  N  +
Sbjct: 15  AALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAE 55

[Close]
BLAST of Spg023056 vs. NCBI nr
Match: XP_022958635.1 (mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022958636.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_022996209.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >XP_022996211.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita maxima] >KAG7035787.1 Mediator of RNA polymerase II transcription subunit 21 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-04
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 86  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ 127
           +ALAF TF TLQR   P+RLSPNYP PP H+P E+  N  +
Sbjct: 15  AALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAE 55

[Close]
BLAST of Spg023056 vs. ExPASy TrEMBL
Match: A0A6J1K432 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=3661 GN=LOC111491504 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-04
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 86  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ 127
           +ALAF TF TLQR   P+RLSPNYP PP H+P E+  N  +
Sbjct: 15  AALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAE 55

[Close]
BLAST of Spg023056 vs. ExPASy TrEMBL
Match: A0A6J1H2M0 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=3662 GN=LOC111459801 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-04
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 86  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ 127
           +ALAF TF TLQR   P+RLSPNYP PP H+P E+  N  +
Sbjct: 15  AALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAE 55

[Close]
BLAST of Spg023056 vs. ExPASy TrEMBL
Match: M1BD21 (Mediator of RNA polymerase II transcription subunit 21 OS=Solanum tuberosum OX=4113 GN=102592456 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-04
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 86  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ 127
           +ALAF TF TLQR   P+RLSPNYP PP   P E+ TN+ +
Sbjct: 15  AALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAE 55

[Close]
BLAST of Spg023056 vs. ExPASy TrEMBL
Match: A0A0V0HDL0 (Mediator of RNA polymerase II transcription subunit 21 OS=Solanum chacoense OX=4108 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-04
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 86  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ 127
           +ALAF TF TLQR   P+RLSPNYP PP   P E+ TN+ +
Sbjct: 15  AALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAE 55

[Close]
BLAST of Spg023056 vs. ExPASy TrEMBL
Match: A0A6N2BME2 (Mediator of RNA polymerase II transcription subunit 21 OS=Solanum chilense OX=4083 GN=EJD97_011104 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.9e-04
Identity = 24/41 (58.54%), Postives = 29/41 (70.73%), Query Frame = 0 

Query: 86  SALAFITFETLQRYTHPIRLSPNYPGPPSHKPIENRTNIGQ 127
           +ALAF TF TLQR   P+RLSPNYP PP   P E+ TN+ +
Sbjct: 15  AALAFNTFGTLQRDAPPVRLSPNYPEPPPANPTEDSTNVAE 55

The following BLAST results are available for this feature:
BLAST of Spg023056 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038893979.16.7e-0563.41mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] ... [more]
XP_038902781.15.6e-0460.98mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida][more]
KAG6605829.17.4e-0458.54Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyr... [more]
XP_022958635.17.4e-0458.54mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata] >XP_... [more]
BLAST of Spg023056 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg023056 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K4323.6e-0458.54Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita maxima OX=36... [more]
A0A6J1H2M03.6e-0458.54Mediator of RNA polymerase II transcription subunit 21 OS=Cucurbita moschata OX=... [more]
M1BD217.9e-0458.54Mediator of RNA polymerase II transcription subunit 21 OS=Solanum tuberosum OX=4... [more]
A0A0V0HDL07.9e-0458.54Mediator of RNA polymerase II transcription subunit 21 OS=Solanum chacoense OX=4... [more]
A0A6N2BME27.9e-0458.54Mediator of RNA polymerase II transcription subunit 21 OS=Solanum chilense OX=40... [more]
BLAST of Spg023056 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023056.1Spg023056.1mRNA