Spg022801 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg022801
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCLAVATA3/ESR-RELATED
Locationscaffold2: 4929939 .. 4930214 (+)
RNA-Seq ExpressionSpg022801
SyntenySpg022801
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTCCTTGTTTAACAGGAAAGCTTTGATCTTTGTCTTTGTTCTGGCTGGTTTTTCCACCTTGTGTCTTCAACCTCAAACAGCTTCTGGGCTCAGCACCATTGATCTTGCTCTCAAATGGGTCGCCTTCAAATCCCCAGTTATCAACACCCACAAGGCTGATTCTGTGAAAAAGATGAACTTGGCTCCTTCACCAGCCATGAAGTTTGACCCGAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAGAAGCTAG

mRNA sequence

ATGGGTTCCTTGTTTAACAGGAAAGCTTTGATCTTTGTCTTTGTTCTGGCTGGTTTTTCCACCTTGTGTCTTCAACCTCAAACAGCTTCTGGGCTCAGCACCATTGATCTTGCTCTCAAATGGGTCGCCTTCAAATCCCCAGTTATCAACACCCACAAGGCTGATTCTGTGAAAAAGATGAACTTGGCTCCTTCACCAGCCATGAAGTTTGACCCGAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAGAAGCTAG

Coding sequence (CDS)

ATGGGTTCCTTGTTTAACAGGAAAGCTTTGATCTTTGTCTTTGTTCTGGCTGGTTTTTCCACCTTGTGTCTTCAACCTCAAACAGCTTCTGGGCTCAGCACCATTGATCTTGCTCTCAAATGGGTCGCCTTCAAATCCCCAGTTATCAACACCCACAAGGCTGATTCTGTGAAAAAGATGAACTTGGCTCCTTCACCAGCCATGAAGTTTGACCCGAATCAATCCAACAAAAGAGGAGTCAAGAAAGGATCCGACCCGATTCACAACAGAAGCTAG

Protein sequence

MGSLFNRKALIFVFVLAGFSTLCLQPQTASGLSTIDLALKWVAFKSPVINTHKADSVKKMNLAPSPAMKFDPNQSNKRGVKKGSDPIHNRS
Homology
BLAST of Spg022801 vs. NCBI nr
Match: KAG6589506.1 (hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 134.0 bits (336), Expect = 6.3e-28
Identity = 70/96 (72.92%), Postives = 78/96 (81.25%), Query Frame = 0

Query: 1  MGSLFNRKALIFVFVLAGFSTLCLQPQTASGLSTIDLALKWVAFKSPVINTHKAD----- 60
          MG LF RK L F+F+LAGF    LQPQTASGL+TID+ALKWVAFKSP I+THKAD     
Sbjct: 1  MGFLFCRKVLFFLFLLAGFVFSLLQPQTASGLATIDVALKWVAFKSPAIHTHKADDSEKK 60

Query: 61 -SVKKMNLAPSPAMKFDPNQSNKRGVKKGSDPIHNR 91
           ++K MN+APSPAM FDPNQSNKR VKKGSDPIHNR
Sbjct: 61 LNMKNMNVAPSPAMNFDPNQSNKRRVKKGSDPIHNR 96

BLAST of Spg022801 vs. NCBI nr
Match: KAG6587538.1 (hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.7 bits (335), Expect = 8.3e-28
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 0

Query: 4  LFNRKALIFVFVLAGFSTLCLQPQTASGLSTIDLALKWVAFKSPVINTHKADSVKK---- 63
          + + KAL+F  +LAG S LC+QPQTASGL+TIDLALKWVAFKSP+ NTH  DSVKK    
Sbjct: 1  MLSTKALVFALLLAGVS-LCVQPQTASGLTTIDLALKWVAFKSPITNTHNPDSVKKLKMK 60

Query: 64 -MNLAPSPAMKFDPNQSNKRGVKKGSDPIHNRS 92
           M+LAPSPAM FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 NMSLAPSPAMHFDPNQSNKRGVKKGSDPIHNRS 92

BLAST of Spg022801 vs. NCBI nr
Match: KGN63668.1 (hypothetical protein Csa_014085 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 2.5e-24
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 0

Query: 1  MGSLFNRKALIFVFVLAGFSTLCL---QPQ-TASGLSTIDLALKWVAFKSP-VINTHKAD 60
          MGSLF+RK L FVFV+A F  LC+   QPQ TA+GLSTID ALKWVAFKS   INTHKAD
Sbjct: 1  MGSLFSRKGLRFVFVVACF-LLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKAD 60

Query: 61 SVKKMNL---APSPAMKFDPNQSNKRGVKKGSDPIHNRS 92
          S  + NL   APSPAM FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SSDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

BLAST of Spg022801 vs. NCBI nr
Match: PON93588.1 (CLAVATA3/ESR-RELATED [Trema orientale])

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-12
Identity = 48/97 (49.48%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 1  MGSLFNRKALIFVFVLAGFSTLCLQPQTASGLSTIDLALKWVAFKSPVI-NTH------K 60
          MG L NR AL+ + +  GF  L L P+  S L + DLALKW   K P + N H       
Sbjct: 1  MGLLANRVALLLLLLSVGF--LALLPENTSALRSKDLALKWDKGKLPFLGNLHIFKAVAL 60

Query: 61 ADSVKKMNLAPSPAMKFDPNQSNKRGVKKGSDPIHNR 91
           D  +K++LAP+P++ FDPNQSNKR V++GSDPIHNR
Sbjct: 61 GDLERKLDLAPAPSVTFDPNQSNKRRVRRGSDPIHNR 95

BLAST of Spg022801 vs. NCBI nr
Match: PQQ10203.1 (hypothetical protein Pyn_16404 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 80.5 bits (197), Expect = 8.3e-12
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0

Query: 1  MGSLFNRKALIFVFVLAGFSTLCLQPQTASGLSTIDLALKW-VAFKSPVINTHKADSV-- 60
          MG L  R A++FV +  GF  L LQP+  SGL ++DLAL+W     S + + H  ++V  
Sbjct: 1  MGFLAYRSAVLFVCI--GF--LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVEAVAV 60

Query: 61 ----KKMNLAPSPAMKFDPNQSNKRGVKKGSDPIHNRS 92
               K++LAP+P+M FDPNQSNKR V+KGSDPIHNRS
Sbjct: 61 EDLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRS 94

BLAST of Spg022801 vs. ExPASy TrEMBL
Match: A0A0A0LPD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.2e-24
Identity = 74/99 (74.75%), Postives = 79/99 (79.80%), Query Frame = 0

Query: 1  MGSLFNRKALIFVFVLAGFSTLCL---QPQ-TASGLSTIDLALKWVAFKSP-VINTHKAD 60
          MGSLF+RK L FVFV+A F  LC+   QPQ TA+GLSTID ALKWVAFKS   INTHKAD
Sbjct: 1  MGSLFSRKGLRFVFVVACF-LLCVLDQQPQTTANGLSTIDAALKWVAFKSTNTINTHKAD 60

Query: 61 SVKKMNL---APSPAMKFDPNQSNKRGVKKGSDPIHNRS 92
          S  + NL   APSPAM FDPNQSNKRGVKKGSDPIHNRS
Sbjct: 61 SSDEKNLNLAAPSPAMNFDPNQSNKRGVKKGSDPIHNRS 98

BLAST of Spg022801 vs. ExPASy TrEMBL
Match: A0A314YU30 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_16404 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-12
Identity = 50/98 (51.02%), Postives = 66/98 (67.35%), Query Frame = 0

Query: 1  MGSLFNRKALIFVFVLAGFSTLCLQPQTASGLSTIDLALKW-VAFKSPVINTHKADSV-- 60
          MG L  R A++FV +  GF  L LQP+  SGL ++DLAL+W     S + + H  ++V  
Sbjct: 1  MGFLAYRSAVLFVCI--GF--LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVEAVAV 60

Query: 61 ----KKMNLAPSPAMKFDPNQSNKRGVKKGSDPIHNRS 92
               K++LAP+P+M FDPNQSNKR V+KGSDPIHNRS
Sbjct: 61 EDLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRS 94

BLAST of Spg022801 vs. ExPASy TrEMBL
Match: A0A2P5F704 (CLAVATA3/ESR-RELATED OS=Trema orientale OX=63057 GN=TorRG33x02_105720 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.0e-12
Identity = 48/97 (49.48%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 1  MGSLFNRKALIFVFVLAGFSTLCLQPQTASGLSTIDLALKWVAFKSPVI-NTH------K 60
          MG L NR AL+ + +  GF  L L P+  S L + DLALKW   K P + N H       
Sbjct: 1  MGLLANRVALLLLLLSVGF--LALLPENTSALRSKDLALKWDKGKLPFLGNLHIFKAVAL 60

Query: 61 ADSVKKMNLAPSPAMKFDPNQSNKRGVKKGSDPIHNR 91
           D  +K++LAP+P++ FDPNQSNKR V++GSDPIHNR
Sbjct: 61 GDLERKLDLAPAPSVTFDPNQSNKRRVRRGSDPIHNR 95

BLAST of Spg022801 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 1  MGSLFNRKALIFVFVLAGFSTLCLQPQTASGLSTIDLALKW-VAFKSPVINTHKADSV-- 60
          MG L  R A++FV +  GF  L LQP+  SGL ++DLAL+W     S + + H   +V  
Sbjct: 1  MGFLAYRSAVLFVCI--GF--LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAV 60

Query: 61 ----KKMNLAPSPAMKFDPNQSNKRGVKKGSDPIHNR 91
               K++LAP+P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 61 EDLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNR 93

BLAST of Spg022801 vs. ExPASy TrEMBL
Match: A0A314XM06 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_31163 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 49/97 (50.52%), Postives = 64/97 (65.98%), Query Frame = 0

Query: 1  MGSLFNRKALIFVFVLAGFSTLCLQPQTASGLSTIDLALKW-VAFKSPVINTHKADSV-- 60
          MG L  R A++FV +  GF  L LQP+  SGL ++DLAL+W     S + + H   +V  
Sbjct: 1  MGFLAYRSAVLFVCI--GF--LALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAV 60

Query: 61 ----KKMNLAPSPAMKFDPNQSNKRGVKKGSDPIHNR 91
               K++LAP+P+M FDPNQSNKR V+KGSDPIHNR
Sbjct: 61 EDLQAKLSLAPAPSMTFDPNQSNKRKVRKGSDPIHNR 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6589506.16.3e-2872.92hypothetical protein SDJN03_14929, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6587538.18.3e-2875.27hypothetical protein SDJN03_16103, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN63668.12.5e-2474.75hypothetical protein Csa_014085 [Cucumis sativus][more]
PON93588.18.3e-1249.48CLAVATA3/ESR-RELATED [Trema orientale][more]
PQQ10203.18.3e-1251.02hypothetical protein Pyn_16404 [Prunus yedoensis var. nudiflora][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPD51.2e-2474.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009720 PE=4 SV=1[more]
A0A314YU304.0e-1251.02Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_164... [more]
A0A2P5F7044.0e-1249.48CLAVATA3/ESR-RELATED OS=Trema orientale OX=63057 GN=TorRG33x02_105720 PE=4 SV=1[more]
M5WYZ52.0e-1150.52Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1[more]
A0A314XM062.0e-1150.52Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_311... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..91
NoneNo IPR availablePANTHERPTHR36726:SF5CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11coord: 2..91
IPR038821CLE-related protein 45-likePANTHERPTHR36726CLAVATA3/ESR (CLE)-RELATED PROTEIN 45coord: 2..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg022801.1Spg022801.1mRNA