Spg022681 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022681
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S28
Location	scaffold2: 3783472 .. 3784680 (+)
RNA-Seq Expression	Spg022681
Synteny	Spg022681

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGTATTTTCCCCCTCCATTTGCTTTGGTTGATTCTGCGGGTTCTCTCTGGTATCTTCCTCTTTCGTCTAAGGTAACTATCAAATTCCTTCTTCGATCCATGGCGATTTCTTTGGTTCTTTGTTCCGTTCAGAATCCATAGTATTGAGATAGTTCTTGTTTGATTTCTCTGCAAATGCATTTATTTTGCAGTTTCTTTCACCTTTAGTCATTACTGTTTTCAATTTCATTTAGTAGAAAAGAAATTTGGGTCGTTGCATTTACGATTTATTTTTGCGATCGAACTTTTATTCTGTTGAAATTTTTCGAATAATAAATAAATAGAGAATCGTAATATTGTTGCTATATGTAATTAATATTAGGCAGATGATTATCTAGATTGAGATTAGTGGTGCTTAGCATTGCAGTTCCTAGTTTTACAGGAGATTGTTTATCAGTTGAAAATCTTGCCATACTATGCTGGTGTCTTCCTCGATGTCGTGGTTGTAAATTATTGATGTAATTAGAATTGTTATTATCGCATGCGCTTTCTGAAAGTTTGGCTCTTCTACAGATAGGATCGTCTTTTATTCATCTATTCCATCATATCAATAAAATTGTTTATTTTTTCCTATAAAAAGGTCTGACTCTTCTAATTCACCCCTAAGGTTTCGTAAAATATTCTCGACTGATTCCCTTCAGCTAAGAAGCATGGATACTTTAATTTAAAATAGTAAATTTTAAAAATAAAATGCATTAAATTAATTTTTTCAAGCATACAAATGCATAAACTTATTGGTTTTGAGTTTCCTTCTCGTATAAAAACGATATATATTTTAAAAAATGTATACTTTTCTAAACGTATCCGTGTCCTAGATTTCTAAACCTTACTGACTCGTTTTATTGGGAAGTTAGAGCTGTATAACCAGTGATTGGTGGTAGATTGTTTTTGAAATTAGGAAGGAATATATTATAAGGGAAAGATTCGATTAGGTTGTAAGATATGTTTTTGGTGTGATTGTGCAGGAATGGAATCGCAAATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGTCAAGTGACTCAAGTTAGAGTCAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCTGTGAGGGAAGGAGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

mRNA sequence

ATGCAAGGAATGGAATCGCAAATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGTCAAGTGACTCAAGTTAGAGTCAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCTGTGAGGGAAGGAGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

Coding sequence (CDS)

ATGCAAGGAATGGAATCGCAAATCAAGCATGCTGTGGTGGTCAAAGTGATGGGTAGAACTGGATCAAGAGGTCAAGTGACTCAAGTTAGAGTCAAGTTTCTTGATGATCAAAATCGTTACATTATGAGGAATGTCAAGGGACCTGTGAGGGAAGGAGACATTCTTACCCTGTTGGAGTCTGAGAGGGAAGCTAGAAGATTGCGTTGA

Protein sequence

MQGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of Spg022681 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3   GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 62
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 63  EARRLR 69
           EARRLR
Sbjct: 104 EARRLR 109

[Close]

BLAST of Spg022681 vs. NCBI nr
Match: KAG7023246.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 62
          GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 34 GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 93

Query: 63 EARRLR 69
          EARRLR
Sbjct: 94 EARRLR 99

[Close]

BLAST of Spg022681 vs. NCBI nr
Match: KAG7027430.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3   GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 62
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 52  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 111

Query: 63  EARRLR 69
           EARRLR
Sbjct: 112 EARRLR 117

[Close]

BLAST of Spg022681 vs. NCBI nr
Match: XP_022922062.1 (40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3   GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 62
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 63  EARRLR 69
           EARRLR
Sbjct: 101 EARRLR 106

[Close]

BLAST of Spg022681 vs. NCBI nr
Match: KAG6595421.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1   MQGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES 60
           + GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES
Sbjct: 45  LSGMESQIKHAMVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLES 104

Query: 61  EREARRLR 69
           EREARRLR
Sbjct: 105 EREARRLR 112

[Close]

BLAST of Spg022681 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.7e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 4  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 64 ARRLR 69
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Spg022681 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.5e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 4  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARRLR 69
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Spg022681 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.6e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 4  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 64 ARRLR 69
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Spg022681 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.4e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 8  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 67
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 68 R 69
          R
Sbjct: 69 R 69

[Close]

BLAST of Spg022681 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.4e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 8  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 67
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 68 R 69
          R
Sbjct: 69 R 69

[Close]

BLAST of Spg022681 vs. ExPASy TrEMBL
Match: A0A6J1E226 (40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3   GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 62
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 41  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 100

Query: 63  EARRLR 69
           EARRLR
Sbjct: 101 EARRLR 106

[Close]

BLAST of Spg022681 vs. ExPASy TrEMBL
Match: A0A6J1E336 (40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430126 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 3   GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 62
           GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER
Sbjct: 44  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESER 103

Query: 63  EARRLR 69
           EARRLR
Sbjct: 104 EARRLR 109

[Close]

BLAST of Spg022681 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 4  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARRLR 69
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Spg022681 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 4  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARRLR 69
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Spg022681 vs. ExPASy TrEMBL
Match: A0A1S3CD61 (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 4  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARRLR 69
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Spg022681 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 4  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARRLR 69
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Spg022681 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 4  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 64 ARRLR 69
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Spg022681 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 4  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 63
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 64 ARRLR 69
          ARRLR
Sbjct: 61 ARRLR 64

The following BLAST results are available for this feature:

BLAST of Spg022681 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922061.1	1.2e-26	100.00	40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]	[more]
KAG7023246.1	1.2e-26	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7027430.1	1.2e-26	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022922062.1	1.2e-26	100.00	40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata]	[more]
KAG6595421.1	2.0e-26	95.59	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Spg022681 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	6.7e-25	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	1.5e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	5.6e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	8.4e-20	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	8.4e-20	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of Spg022681 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E226	5.6e-27	100.00	40S ribosomal protein S28-1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1E336	5.6e-27	100.00	40S ribosomal protein S28-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HTG7	2.8e-26	100.00	40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=...	[more]
A0A0A0LPR2	2.8e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1	[more]
A0A1S3CD61	2.8e-26	100.00	40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1	[more]

BLAST of Spg022681 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	1.1e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	1.1e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	4.0e-25	89.23	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 7..67 e-value: 1.3E-32 score: 111.5
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 4..68
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 4..68 score: 21.430906
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 9..68 e-value: 2.26533E-30 score: 99.2467
None	No IPR available	GENE3D	2.40.50.140		coord: 1..68 e-value: 5.5E-37 score: 127.4
None	No IPR available	PANTHER	PTHR10769:SF3	40S RIBOSOMAL PROTEIN S28	coord: 4..68
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 59..67
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022681.1	Spg022681.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006508	proteolysis
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003735	structural constituent of ribosome