Spg022660 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg022660
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-type domain-containing protein
Location	scaffold2: 6007680 .. 6010540 (+)
RNA-Seq Expression	Spg022660
Synteny	Spg022660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAAGGGGGCAAGAAGAACTCGAATAAAACATAAAAACAAACAGAAACAATTCTTCCTCTCTTCCGAGTGATTTCCTTAAACCGCAAATCCGCAGCAACAGCACTAGCAACCTCATCCACCGGGTTTGTGTTTCTGTTCCAAAAAGGCCCAAATCATTCATTCAATTCAATTCAATTCAATTCAATTTCCCATTCTCGCCACCACAGATCATCGCCTAAATTTAACCTCTTCATTATATTAATCCTCACTCTCCTCGCTCTATTATATTAGCAATCTTAATTACTATGGGAAAGCGCAAGCGAGGCTCTGATCAGACCCACCCCGATCGTCCTCTTCATCTCTCCGGTATGTATGTTTTCCTTTTCTCTCATAACCATCATGCTCTGTTTCTGTTTGTAGAAATGTCTGAAAGAGATTATTCCTTTGCGTCGATACAGAGTTTTTGTTATGACGATGAATCGTCTTTGTTTGAGCTTTGAAATTAATGGGGTGCCATTGGGGGATGTGGGTTTTGTGAGTAATTGGCATTTTTGGAAGTTCAATTGGGTCTGTGAGAATTCTCTTCAAGAATGAGAATTTTGAGAGTTGATTGTTGGTTTTATTTGCTGTTGAAGTATTTCAATTCTATAAGCAGGATTTGGGGGTTGGTTGGGCCTTTTAAGGATGTAGTTTGTTGACCAATCTCAGTCAATTGGCTACTTCAATACTTTTTGGAATTAGCTTTTGTTTGGATACATTTGAGTTCTCTTTCTTTTGATCAAACGAAAATTGAGATGTGTTTGTTCTAGTTAACAAGGTGGAATTGAGTTAATTTTACGCTTTGGAAATTGGAACTGATGCGTTATTCTGTTTTTCCCATGTTTTGAATGATGAAATGGAACATGTTTCGTACATTTGTTGCAGGTATAGTGCCTTTTTCCAGTCAAATGGATGTGCGGTCAGAAGAGGTTTGTACTCTTCTGTTTGCTTCAGAGATCTTACCCATCTGAAAAATGAGAAACTGTTTCTACTTTGCTTTGTAATTCAAACTTGTATGCTTCATTGACCTATCTAGTTCAAGCTTCAGCGAGTAGGCAAAAAAATAGTTTAATCCTTTCCCTTACTAGAGAAACATTGAAGTTTAAGTTTTTTCCTTTTAGTGGGCCACAATCTATTAAAGCTATGTTGCATTGAACAAGCAGGATCAGAGTCTTGCTCGTCCAGTATTCATGAAACGTTCACGTCATCAGTATAACCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATCCATCCACCTCTCGTGAAAACCGAGTCAGAACAATACTTGAAGAGCGACCCGCCTTTAAGTTTGCTGCTCATTGCAACTCAGAGTTTCCAGACCATATAGGTACTCTTTTTGAAGTTGCTAAACATGTCTGTCCACGTTTTCTCAGTGGGAAGTGAGAGTACTTTACGCAATGACATGTTCACTTGTATGATCTTGAATGTTACAAGATTTTTGAAAATTCTTATCCCGTAAATTATGTGGCTATCTCTTTAAAAGACCTGAAAACATAAACAATGCTAGAATAAGGTGCTGTATGGCACATCTCAAATAAATTAAATTCCAACATTTCTTCTGGTTGGATGACTAGGCACCTTGCTTTGAGTCGCCTATTCTTCTATCTCATTTATTTGCAGTTTTGGTGATTCAAGCCAAAAGAAAAAGTAAATTTTAGTATTTGAATTCTGGATATCTTCGCATTGAAAGAACAGTCAATTGTGTGGCATGAAACACTTTTTTTACAAAGGGAAATATCCTAATAATATATCATGGACCTTGAACCAAGTTGGAATTTCCAATCGATGAATCCTAACGATCATGGCCAACCTGAACATAGCTCAATTGATTAAGACATACTTTTGAACAAGAAATCAGAGGTTCGAATCCCCCCTTCCTCAACATGTTGTTGAACTAAAAAAAATCCTACCGATCATCTACAAACTAAAGATGAAGTATATAAATAAATCAGCCTCTCGTCTCATCCCACACCATTTGATGCTCTCGCTAGAGTGGGGGAAGATAATTGCTTCTTCTACATTGATGATGTTGTTGTTCTGTATTAACTCAACTTTTTGCATTGATTTTAGATGGCATCGAGAGCACCTTTTGGGGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATACAATTTCATCTCATGGAATGAGAATGCTGTGTGGGATCTGTCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGCGAACTCCCTGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACAGGTCAAATGTCGAAGATAGGAGCGATCCACCTTGTCCATTGTGCATGGAACCGCCTGTCGACGACTCAAAAGAAGGAGAACAGCAATGAGTTGAGCTGTACATATGTTATCACATCACACCAACATAGGAGAATTAGGCTTGGCTTTGACTGGAATGGGCAGCTTAAAAGGTGGAGTTTTTGCATCCTCGACTATTTTTCCATGAACGAATCTCTCTCTCACTGTTTTTCTGGATGGCTGTGATTTAGAAAAAGAAACTGGTAGCTTTAAATCACGACCATACAGAAAATAGTGATATCGAGTCGAGAAATAACGAGGATTGTGCTCCATAGATTGCTTTTTGTCTAGAACTAGACTGACAAGTGCAAGTCCTTTTGTTACTTACCTTCTGGATTTTTGTTATCTAGCAGCAGAGGATTTTAGTTGAGACATCTTCCTGGGATTATGTTCTTTAGAGTAATGTCTAAAACAGTATATTTTATAAAGTACTGATGTAAGTAAAATTATCATGAAAGTGGA

mRNA sequence

ATGGGAAAGCGCAAGCGAGGCTCTGATCAGACCCACCCCGATCGTCCTCTTCATCTCTCCGGTATAGTGCCTTTTTCCAGTCAAATGGATGTGCGGTCAGAAGAGGATCAGAGTCTTGCTCGTCCAGTATTCATGAAACGTTCACGTCATCAGTATAACCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATCCATCCACCTCTCGTGAAAACCGAGTCAGAACAATACTTGAAGAGCGACCCGCCTTTAAGTTTGCTGCTCATTGCAACTCAGAGTTTCCAGACCATATAGATGGCATCGAGAGCACCTTTTGGGGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATACAATTTCATCTCATGGAATGAGAATGCTGTGTGGGATCTGTCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGCGAACTCCCTGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACAGGTCAAATGTCGAAGATAGGAGCGATCCACCTTGTCCATTGTGCATGGAACCGCCTGTCGACGACTCAAAAGAAGGAGAACAGCAATGA

Coding sequence (CDS)

ATGGGAAAGCGCAAGCGAGGCTCTGATCAGACCCACCCCGATCGTCCTCTTCATCTCTCCGGTATAGTGCCTTTTTCCAGTCAAATGGATGTGCGGTCAGAAGAGGATCAGAGTCTTGCTCGTCCAGTATTCATGAAACGTTCACGTCATCAGTATAACCATCAATATTGTCGGCGAGGTTCAACCAGTCAAGCAAATCCATCCACCTCTCGTGAAAACCGAGTCAGAACAATACTTGAAGAGCGACCCGCCTTTAAGTTTGCTGCTCATTGCAACTCAGAGTTTCCAGACCATATAGATGGCATCGAGAGCACCTTTTGGGGGCCAGAAAGGATAAGGTACAATTCCTTAGGGAAGGATACAATTTCATCTCATGGAATGAGAATGCTGTGTGGGATCTGTCAGAAGCTGATGAGACGAAAGCTTTGCTTTCTCGGCAACACGCTTTCTTCCAGCGAACTCCCTGTTGCTGCGGTTTTAGTTTGTGGCCATGTCTATCATGCAGACTGTCTGGAGAACAGGTCAAATGTCGAAGATAGGAGCGATCCACCTTGTCCATTGTGCATGGAACCGCCTGTCGACGACTCAAAAGAAGGAGAACAGCAATGA

Protein sequence

MGKRKRGSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRRGSTSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGKDTISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVEDRSDPPCPLCMEPPVDDSKEGEQQ

Homology

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BLAST of Spg022660 vs. NCBI nr
Match: XP_038878632.1 (uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida])

HSP 1 Score: 377.9 bits (969), Expect = 5.6e-101
Identity = 180/204 (88.24%), Postives = 190/204 (93.14%), Query Frame = 0


Query: 1   MGKRKRGSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRRG 60
           MGKRKRGSDQTH D PLHLSG+VPFS+QMDVRSEED+S ARPVFMKRSRHQY+HQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQMDVRSEEDRSPARPVFMKRSRHQYSHQYCRRG 60

Query: 61  STSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGKD 120
           STS AN S SRENRV+T+LEERPAFKFAAHCNSEFPDHI+ IE TFWGPERIRYNS GKD
Sbjct: 61  STSHANASMSRENRVKTVLEERPAFKFAAHCNSEFPDHIESIEKTFWGPERIRYNSFGKD 120

Query: 121 TISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVEDR 180
             SSHGMRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLENRSNVEDR
Sbjct: 121 AFSSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVEDR 180

Query: 181 SDPPCPLCMEPP--VDDSKEGEQQ 203
           SDPPCPLCMEPP  VDDSK GEQ+
Sbjct: 181 SDPPCPLCMEPPPEVDDSKGGEQE 204

[Close]

BLAST of Spg022660 vs. NCBI nr
Match: XP_038878631.1 (uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 180/205 (87.80%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 1   MGKRKRGSDQTHPDRPLHLSGIVPFSSQMDVRSEE-DQSLARPVFMKRSRHQYNHQYCRR 60
           MGKRKRGSDQTH D PLHLSG+VPFS+QMDVRSEE D+S ARPVFMKRSRHQY+HQYCRR
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQMDVRSEEQDRSPARPVFMKRSRHQYSHQYCRR 60

Query: 61  GSTSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGK 120
           GSTS AN S SRENRV+T+LEERPAFKFAAHCNSEFPDHI+ IE TFWGPERIRYNS GK
Sbjct: 61  GSTSHANASMSRENRVKTVLEERPAFKFAAHCNSEFPDHIESIEKTFWGPERIRYNSFGK 120

Query: 121 DTISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVED 180
           D  SSHGMRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLENRSNVED
Sbjct: 121 DAFSSHGMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSNVED 180

Query: 181 RSDPPCPLCMEPP--VDDSKEGEQQ 203
           RSDPPCPLCMEPP  VDDSK GEQ+
Sbjct: 181 RSDPPCPLCMEPPPEVDDSKGGEQE 205

[Close]

BLAST of Spg022660 vs. NCBI nr
Match: XP_022134599.1 (uncharacterized protein LOC111006826 [Momordica charantia])

HSP 1 Score: 365.9 bits (938), Expect = 2.2e-97
Identity = 177/203 (87.19%), Postives = 188/203 (92.61%), Query Frame = 0


Query: 1   MGKRKR-GSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRR 60
           MGKRKR  SD THPD PLHLSG+VPFS+QMDV SEEDQSLARPVFMKRSRHQY+HQYCRR
Sbjct: 1   MGKRKRASSDHTHPDPPLHLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRR 60

Query: 61  GSTSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGK 120
           GSTSQAN STSRENRVRT+LEERPAFKFAAHCNSEFP+HI+ IE+TFWGPERIRY+SLGK
Sbjct: 61  GSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGK 120

Query: 121 DTISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVED 180
           D ISSHG+RMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLE RS VED
Sbjct: 121 DAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVED 180

Query: 181 RSDPPCPLCMEP--PVDDSKEGE 201
           RSDPPCPLC EP   +DDSK G+
Sbjct: 181 RSDPPCPLCTEPSTKIDDSKGGQ 203

[Close]

BLAST of Spg022660 vs. NCBI nr
Match: XP_008443927.1 (PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo] >KAA0050085.1 uncharacterized protein E6C27_scaffold675G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 364.4 bits (934), Expect = 6.4e-97
Identity = 177/204 (86.76%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MGKRKRGSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRRG 60
           MGKRKRGSDQTH D PLHLSG+VPFS+Q DVRSEED SLARP+FMKRSRH Y+HQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  STSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGKD 120
           STSQAN STSRENRVRT+LEERPAFKFAAHCNSEFPD I+ IESTF GPERIRYNSLGKD
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 TISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVEDR 180
            ISSH MRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLENRS+VEDR
Sbjct: 121 AISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLC--MEPPVDDSKEGEQQ 203
           SDPPCPLC  + P VDDSK GEQ+
Sbjct: 181 SDPPCPLCTKLPPEVDDSKGGEQE 204

[Close]

BLAST of Spg022660 vs. NCBI nr
Match: TYK06338.1 (uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 176/204 (86.27%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MGKRKRGSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRRG 60
           MGKRKRGSDQTH D PLHLSG+VPFS+Q DVRSEED SLARP+FMKRSRH Y+HQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  STSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGKD 120
           STSQAN STSRENRVRT+LEERPAFKFAAHCNSEFPD I+ IESTF GPERIRYNSLGKD
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 TISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVEDR 180
            ISSH +RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLENRS+VEDR
Sbjct: 121 AISSHLVRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLC--MEPPVDDSKEGEQQ 203
           SDPPCPLC  + P VDDSK GEQ+
Sbjct: 181 SDPPCPLCTKLPPEVDDSKGGEQE 204

[Close]

BLAST of Spg022660 vs. ExPASy TrEMBL
Match: A0A6J1BZ68 (uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006826 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 177/203 (87.19%), Postives = 188/203 (92.61%), Query Frame = 0


Query: 1   MGKRKR-GSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRR 60
           MGKRKR  SD THPD PLHLSG+VPFS+QMDV SEEDQSLARPVFMKRSRHQY+HQYCRR
Sbjct: 1   MGKRKRASSDHTHPDPPLHLSGVVPFSNQMDVLSEEDQSLARPVFMKRSRHQYSHQYCRR 60

Query: 61  GSTSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGK 120
           GSTSQAN STSRENRVRT+LEERPAFKFAAHCNSEFP+HI+ IE+TFWGPERIRY+SLGK
Sbjct: 61  GSTSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPNHIESIENTFWGPERIRYSSLGK 120

Query: 121 DTISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVED 180
           D ISSHG+RMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLE RS VED
Sbjct: 121 DAISSHGVRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLEIRSKVED 180

Query: 181 RSDPPCPLCMEP--PVDDSKEGE 201
           RSDPPCPLC EP   +DDSK G+
Sbjct: 181 RSDPPCPLCTEPSTKIDDSKGGQ 203

[Close]

BLAST of Spg022660 vs. ExPASy TrEMBL
Match: A0A5A7U906 (RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00690 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.1e-97
Identity = 177/204 (86.76%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MGKRKRGSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRRG 60
           MGKRKRGSDQTH D PLHLSG+VPFS+Q DVRSEED SLARP+FMKRSRH Y+HQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  STSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGKD 120
           STSQAN STSRENRVRT+LEERPAFKFAAHCNSEFPD I+ IESTF GPERIRYNSLGKD
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 TISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVEDR 180
            ISSH MRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLENRS+VEDR
Sbjct: 121 AISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLC--MEPPVDDSKEGEQQ 203
           SDPPCPLC  + P VDDSK GEQ+
Sbjct: 181 SDPPCPLCTKLPPEVDDSKGGEQE 204

[Close]

BLAST of Spg022660 vs. ExPASy TrEMBL
Match: A0A1S3B956 (uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487402 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.1e-97
Identity = 177/204 (86.76%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MGKRKRGSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRRG 60
           MGKRKRGSDQTH D PLHLSG+VPFS+Q DVRSEED SLARP+FMKRSRH Y+HQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  STSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGKD 120
           STSQAN STSRENRVRT+LEERPAFKFAAHCNSEFPD I+ IESTF GPERIRYNSLGKD
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 TISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVEDR 180
            ISSH MRM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLENRS+VEDR
Sbjct: 121 AISSHLMRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLC--MEPPVDDSKEGEQQ 203
           SDPPCPLC  + P VDDSK GEQ+
Sbjct: 181 SDPPCPLCTKLPPEVDDSKGGEQE 204

[Close]

BLAST of Spg022660 vs. ExPASy TrEMBL
Match: A0A5D3C5B4 (RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00020 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.0e-97
Identity = 176/204 (86.27%), Postives = 188/204 (92.16%), Query Frame = 0


Query: 1   MGKRKRGSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRRG 60
           MGKRKRGSDQTH D PLHLSG+VPFS+Q DVRSEED SLARP+FMKRSRH Y+HQYCRRG
Sbjct: 1   MGKRKRGSDQTHHDPPLHLSGMVPFSNQTDVRSEEDTSLARPIFMKRSRHHYSHQYCRRG 60

Query: 61  STSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGKD 120
           STSQAN STSRENRVRT+LEERPAFKFAAHCNSEFPD I+ IESTF GPERIRYNSLGKD
Sbjct: 61  STSQANASTSRENRVRTVLEERPAFKFAAHCNSEFPDRIESIESTFRGPERIRYNSLGKD 120

Query: 121 TISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVEDR 180
            ISSH +RM+CGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHA+CLENRS+VEDR
Sbjct: 121 AISSHLVRMVCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAECLENRSSVEDR 180

Query: 181 SDPPCPLC--MEPPVDDSKEGEQQ 203
           SDPPCPLC  + P VDDSK GEQ+
Sbjct: 181 SDPPCPLCTKLPPEVDDSKGGEQE 204

[Close]

BLAST of Spg022660 vs. ExPASy TrEMBL
Match: A0A6J1HAS2 (uncharacterized protein LOC111461650 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461650 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.2e-96
Identity = 176/202 (87.13%), Postives = 187/202 (92.57%), Query Frame = 0


Query: 1   MGKRKRGSDQTHPDRPLHLSGIVPFSSQMDVRSEEDQSLARPVFMKRSRHQYNHQYCRRG 60
           MGKRK GSDQTH DRP HLSGIVPFS+QMDVRSEED+SLARP+FMKRSRHQY+HQYCRRG
Sbjct: 7   MGKRKPGSDQTHHDRPHHLSGIVPFSNQMDVRSEEDRSLARPIFMKRSRHQYSHQYCRRG 66

Query: 61  STSQANPSTSRENRVRTILEERPAFKFAAHCNSEFPDHIDGIESTFWGPERIRYNSLGKD 120
           STS+AN STSRENRVRTILE+RPAFKFAAHCNSEFPDHI+  ESTF  PERIRYNSLGKD
Sbjct: 67  STSEANASTSRENRVRTILEKRPAFKFAAHCNSEFPDHIESNESTFLRPERIRYNSLGKD 126

Query: 121 TISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVEDR 180
           TISSHG +++CGICQKLMRRKLCFLGNTLSSSELP+AAVLVCGHVYHADCLEN SNVEDR
Sbjct: 127 TISSHGRKIVCGICQKLMRRKLCFLGNTLSSSELPIAAVLVCGHVYHADCLENGSNVEDR 186

Query: 181 SDPPCPLCMEPP--VDDSKEGE 201
           SDP CPLCMEPP  VDDS E E
Sbjct: 187 SDPGCPLCMEPPAKVDDSTEQE 208

[Close]

BLAST of Spg022660 vs. TAIR 10
Match: AT1G75400.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-11
Identity = 27/61 (44.26%), Postives = 42/61 (68.85%), Query Frame = 0


Query: 128 RMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYHADCLENRSNVEDRSDPPCPL 187
           + +CG C KL+  +     +++++ ELP+AAVL CGHVYHA+CLE  +   ++ DP CP+
Sbjct: 278 QQVCGACSKLLTER-----SSIATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPI 333

Query: 188 C 189
           C
Sbjct: 338 C 333

[Close]

BLAST of Spg022660 vs. TAIR 10
Match: AT1G19680.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-11
Identity = 32/86 (37.21%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 108 GPERIRYNSLGKDTISSHGMRMLCGICQKLMRRKLCFLGNTLSSSELPVAAVLVCGHVYH 167
           G  R+   S  + + S    +  CG C KL+  +     + ++  +LP+ AVL CGHVYH
Sbjct: 250 GRRRLSGCSSSRFSCSPSVDQQTCGRCSKLLTER-----SPVARFDLPIPAVLACGHVYH 309

Query: 168 ADCLENRSNVEDRSDPPCPLCMEPPV 194
           A CLE  +N  ++ DP CP+C E  V
Sbjct: 310 AACLETMTNETEKYDPTCPICTETQV 330

[Close]

BLAST of Spg022660 vs. TAIR 10
Match: AT4G39140.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-11
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 117 LGKDTISSHGMRM------LCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAD 176
           L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 177 CLENRSNVEDRSDPPCPLC 189
           CLE  +   D+ DP CP+C
Sbjct: 300 CLEQMTPEIDKFDPSCPIC 318

[Close]

BLAST of Spg022660 vs. TAIR 10
Match: AT4G39140.2 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-11
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 117 LGKDTISSHGMRM------LCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAD 176
           L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 177 CLENRSNVEDRSDPPCPLC 189
           CLE  +   D+ DP CP+C
Sbjct: 300 CLEQMTPEIDKFDPSCPIC 318

[Close]

BLAST of Spg022660 vs. TAIR 10
Match: AT4G39140.3 (RING/U-box superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 9.8e-11
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 117 LGKDTISSHGMRM------LCGICQK-LMRRKLCFLGNTLSSSELPVAAVLVCGHVYHAD 176
           L +D I  HG RM       CG C + L  + L        ++EL V+A+L CGHVYH +
Sbjct: 240 LQRDKIDHHGNRMSKHQQHTCGACSRPLSEKSLWSSQKIFMTNELSVSAILACGHVYHGE 299

Query: 177 CLENRSNVEDRSDPPCPLC 189
           CLE  +   D+ DP CP+C
Sbjct: 300 CLEQMTPEIDKFDPSCPIC 318

The following BLAST results are available for this feature:

BLAST of Spg022660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878632.1	5.6e-101	88.24	uncharacterized protein LOC120070818 isoform X2 [Benincasa hispida]	[more]
XP_038878631.1	1.4e-99	87.80	uncharacterized protein LOC120070818 isoform X1 [Benincasa hispida]	[more]
XP_022134599.1	2.2e-97	87.19	uncharacterized protein LOC111006826 [Momordica charantia]	[more]
XP_008443927.1	6.4e-97	86.76	PREDICTED: uncharacterized protein LOC103487402 isoform X2 [Cucumis melo] >KAA00...	[more]
TYK06338.1	1.9e-96	86.27	uncharacterized protein E5676_scaffold163G00020 [Cucumis melo var. makuwa]	[more]

BLAST of Spg022660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZ68	1.1e-97	87.19	uncharacterized protein LOC111006826 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5A7U906	3.1e-97	86.76	RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3B956	3.1e-97	86.76	uncharacterized protein LOC103487402 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3C5B4	9.0e-97	86.27	RING-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1HAS2	1.2e-96	87.13	uncharacterized protein LOC111461650 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Spg022660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75400.1	1.5e-11	44.26	RING/U-box superfamily protein	[more]
AT1G19680.1	2.6e-11	37.21	RING/U-box superfamily protein	[more]
AT4G39140.1	9.8e-11	40.51	RING/U-box superfamily protein	[more]
AT4G39140.2	9.8e-11	40.51	RING/U-box superfamily protein	[more]
AT4G39140.3	9.8e-11	40.51	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 131..188 e-value: 1.6E-4 score: 31.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 131..188 score: 10.18781
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 114..199 e-value: 2.9E-7 score: 31.8
IPR027370	RING-type zinc-finger, LisH dimerisation motif	PFAM	PF13445	zf-RING_UBOX	coord: 131..186 e-value: 2.0E-5 score: 24.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..202
None	No IPR available	PANTHER	PTHR31150	EXPRESSED PROTEIN	coord: 36..193
None	No IPR available	PANTHER	PTHR31150:SF6	CHROMATIN REGULATOR PHD FAMILY-RELATED	coord: 36..193
None	No IPR available	CDD	cd16448	RING-H2	coord: 131..189 e-value: 1.60153E-4 score: 36.2759
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 130..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg022660.1	Spg022660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding