Spg022263 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg022263
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPre T-cell antigen receptor alpha
Locationscaffold2: 2917801 .. 2918443 (+)
RNA-Seq ExpressionSpg022263
SyntenySpg022263
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGGAACCACAGGGCAAAGTGAAGAGACAGACGAGGGTAAACTGTAGAGAGAGCGAGCGAGTTTGCAAGAAGCGAAGAGGAGAGAAATTCGAACACAGCGACAATGGGCGGAGGAATGGAAGCTCACAAGAACAGATTTATCGAGGATTGGGGTACTGCTAGAGAAAATCTTGAGCATAACTTCCGTTGGACTCGCCGCAACTTTGCTCTTGTGGGAATTTTCGGCATCGCCCTTCCCCTCCTCGTTTACAAGGGCATCGTCAGGGAATTCGTAATATCATTTCTCTCTCTTCTTTTTTATGATCTTTTTTCCTGCAATTGGTATGTGGTTCGGTTTATTGTTTCGATCTTTTTGTTTCTTGATCTGTTGACGCCCATCCACATCGTGTGTTTCAATCCGGGTTGAAATTGTTCTTTTCTAGGGTTTCCATTTCTTACGTGTTTGCGACTCTGGATTTCGTTTCTACTTAATTGTTTAAAAGTGAAGAAGGGTCTGATCCTATTTTCCTTAACTGGCCGGCCGTCATGATTTTCCAAGTGTCAGTTTCTTTTGGTTTCATTGGTTTGTTCGTAGGCTTGGAATTCACATGTTTATACTGCTGGTGATGATTTGATTACCGGGTCGGAGAATACAAGTTTATAA

mRNA sequence

ATGGGCGGAGGAATGGAAGCTCACAAGAACAGATTTATCGAGGATTGGGGTACTGCTAGAGAAAATCTTGAGCATAACTTCCGTTGGACTCGCCGCAACTTTGCTCTTGTGGGAATTTTCGGCATCGCCCTTCCCCTCCTCGTTTACAAGGGCATCGTCAGGGAATTCGCTTGGAATTCACATGTTTATACTGCTGGTGATGATTTGATTACCGGGTCGGAGAATACAAGTTTATAA

Coding sequence (CDS)

ATGGGCGGAGGAATGGAAGCTCACAAGAACAGATTTATCGAGGATTGGGGTACTGCTAGAGAAAATCTTGAGCATAACTTCCGTTGGACTCGCCGCAACTTTGCTCTTGTGGGAATTTTCGGCATCGCCCTTCCCCTCCTCGTTTACAAGGGCATCGTCAGGGAATTCGCTTGGAATTCACATGTTTATACTGCTGGTGATGATTTGATTACCGGGTCGGAGAATACAAGTTTATAA

Protein sequence

MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREFAWNSHVYTAGDDLITGSENTSL
Homology
BLAST of Spg022263 vs. NCBI nr
Match: KZV34329.1 (Pre T-cell antigen receptor alpha [Dorcoceras hygrometricum])

HSP 1 Score: 117.1 bits (292), Expect = 6.9e-23
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREFA 58
          MGGGMEAHKNR+IEDW TARENLEHNFRWTRRNFALVGIFGIALP+LVYKGIVREF+
Sbjct: 1  MGGGMEAHKNRWIEDWSTARENLEHNFRWTRRNFALVGIFGIALPVLVYKGIVREFS 57

BLAST of Spg022263 vs. NCBI nr
Match: KAG7023344.1 (hypothetical protein SDJN02_14369, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 9.0e-23
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREFAWNS 60
          MGGGMEAHKN+FIEDW +ARENLEHNFRWTRRNFALVG+FGIA+PLLVYKGIVREF  + 
Sbjct: 1  MGGGMEAHKNKFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREFVISF 60

Query: 61 HVYTAGD 68
            +  GD
Sbjct: 61 LSFLFGD 67

BLAST of Spg022263 vs. NCBI nr
Match: XP_022930869.1 (uncharacterized protein LOC111437222 [Cucurbita moschata] >XP_022970269.1 uncharacterized protein LOC111469278 [Cucurbita maxima] >XP_023529258.1 uncharacterized protein LOC111792156 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.7 bits (291), Expect = 9.0e-23
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREF 57
          MGGGMEA KNRFIEDWG+ARENLEHNFRWTRRNFALVGIFGIA+PLLVYKGIVREF
Sbjct: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 56

BLAST of Spg022263 vs. NCBI nr
Match: XP_022988537.1 (uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharacterized protein LOC111780310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREF 57
          MGGGMEAHKNRFIEDW +ARENLEHNFRWTRRNFALVG+FGIA+PLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 56

BLAST of Spg022263 vs. NCBI nr
Match: XP_039161924.1 (uncharacterized protein LOC120290205 [Eucalyptus grandis] >KCW78476.1 hypothetical protein EUGRSUZ_D02622 [Eucalyptus grandis])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREF 57
          MGGGMEAHKN+FIEDWG+ARE LEHNFRWTRRNFALVGIFG+A+PLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREF 56

BLAST of Spg022263 vs. ExPASy TrEMBL
Match: A0A2Z7BLR4 (Pre T-cell antigen receptor alpha OS=Dorcoceras hygrometricum OX=472368 GN=F511_37579 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 53/57 (92.98%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREFA 58
          MGGGMEAHKNR+IEDW TARENLEHNFRWTRRNFALVGIFGIALP+LVYKGIVREF+
Sbjct: 1  MGGGMEAHKNRWIEDWSTARENLEHNFRWTRRNFALVGIFGIALPVLVYKGIVREFS 57

BLAST of Spg022263 vs. ExPASy TrEMBL
Match: A0A6J1I518 (uncharacterized protein LOC111469278 OS=Cucurbita maxima OX=3661 GN=LOC111469278 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.3e-23
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREF 57
          MGGGMEA KNRFIEDWG+ARENLEHNFRWTRRNFALVGIFGIA+PLLVYKGIVREF
Sbjct: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 56

BLAST of Spg022263 vs. ExPASy TrEMBL
Match: A0A6J1ESQ6 (uncharacterized protein LOC111437222 OS=Cucurbita moschata OX=3662 GN=LOC111437222 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.3e-23
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREF 57
          MGGGMEA KNRFIEDWG+ARENLEHNFRWTRRNFALVGIFGIA+PLLVYKGIVREF
Sbjct: 1  MGGGMEAQKNRFIEDWGSARENLEHNFRWTRRNFALVGIFGIAIPLLVYKGIVREF 56

BLAST of Spg022263 vs. ExPASy TrEMBL
Match: A0A6J1JDA5 (uncharacterized protein LOC111485748 OS=Cucurbita maxima OX=3661 GN=LOC111485748 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.7e-23
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREF 57
          MGGGMEAHKNRFIEDW +ARENLEHNFRWTRRNFALVG+FGIA+PLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNRFIEDWSSARENLEHNFRWTRRNFALVGLFGIAVPLLVYKGIVREF 56

BLAST of Spg022263 vs. ExPASy TrEMBL
Match: A0A059CK03 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.4e-23
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREF 57
          MGGGMEAHKN+FIEDWG+ARE LEHNFRWTRRNFALVGIFG+A+PLLVYKGIVREF
Sbjct: 1  MGGGMEAHKNKFIEDWGSARETLEHNFRWTRRNFALVGIFGVAIPLLVYKGIVREF 56

BLAST of Spg022263 vs. TAIR 10
Match: AT2G31490.1 (unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-25
Identity = 47/56 (83.93%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MGGGMEAHKNRFIEDWGTARENLEHNFRWTRRNFALVGIFGIALPLLVYKGIVREF 57
          MGGGME +KN+FIEDWG+ARENLEHNFRWTRRNFAL+GIFGIALP++VYKGIV++F
Sbjct: 1  MGGGMETNKNKFIEDWGSARENLEHNFRWTRRNFALIGIFGIALPIIVYKGIVKDF 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KZV34329.16.9e-2392.98Pre T-cell antigen receptor alpha [Dorcoceras hygrometricum][more]
KAG7023344.19.0e-2379.10hypothetical protein SDJN02_14369, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022930869.19.0e-2394.64uncharacterized protein LOC111437222 [Cucurbita moschata] >XP_022970269.1 unchar... [more]
XP_022988537.11.2e-2292.86uncharacterized protein LOC111485748 [Cucurbita maxima] >XP_023516450.1 uncharac... [more]
XP_039161924.11.5e-2291.07uncharacterized protein LOC120290205 [Eucalyptus grandis] >KCW78476.1 hypothetic... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2Z7BLR43.3e-2392.98Pre T-cell antigen receptor alpha OS=Dorcoceras hygrometricum OX=472368 GN=F511_... [more]
A0A6J1I5184.3e-2394.64uncharacterized protein LOC111469278 OS=Cucurbita maxima OX=3661 GN=LOC111469278... [more]
A0A6J1ESQ64.3e-2394.64uncharacterized protein LOC111437222 OS=Cucurbita moschata OX=3662 GN=LOC1114372... [more]
A0A6J1JDA55.7e-2392.86uncharacterized protein LOC111485748 OS=Cucurbita maxima OX=3661 GN=LOC111485748... [more]
A0A059CK037.4e-2391.07Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_D02622 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT2G31490.14.6e-2583.93unknown protein; Has 55 Blast hits to 55 proteins in 15 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35479:SF4UNNAMED PRODUCTcoord: 1..60
NoneNo IPR availablePANTHERPTHR35479UNNAMED PRODUCTcoord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg022263.1Spg022263.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005747 mitochondrial respiratory chain complex I