Spg021974 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg021974
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LYR motif-containing protein 4
Location	scaffold2: 4618903 .. 4619175 (-)
RNA-Seq Expression	Spg021974
Synteny	Spg021974

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTCCAACAAGATCGGAATCCCTTTCGCTTCTTCGCTCTCTGCTCCGCACAGCCCGTCACTTCTGCGATTACAACATCAGAGAGTACGCCAAACGCCGCGCCGTCGACGGCTTCCGCCATAACCGGAACCTCTCCGATCCTTCATCCATCTCCTCCGCCTACGCCGACGGCAAGGCGCAGCTTGAAGTTGCCAAGAGACAGTCCGCCGTCTACTCCCTCTTCTCGCCCAAGGCCAAGAGCATCATGGAGGCTCATCACACAAACTGA

mRNA sequence

ATGGCGACTCCAACAAGATCGGAATCCCTTTCGCTTCTTCGCTCTCTGCTCCGCACAGCCCGTCACTTCTGCGATTACAACATCAGAGAGTACGCCAAACGCCGCGCCGTCGACGGCTTCCGCCATAACCGGAACCTCTCCGATCCTTCATCCATCTCCTCCGCCTACGCCGACGGCAAGGCGCAGCTTGAAGTTGCCAAGAGACAGTCCGCCGTCTACTCCCTCTTCTCGCCCAAGGCCAAGAGCATCATGGAGGCTCATCACACAAACTGA

Coding sequence (CDS)

ATGGCGACTCCAACAAGATCGGAATCCCTTTCGCTTCTTCGCTCTCTGCTCCGCACAGCCCGTCACTTCTGCGATTACAACATCAGAGAGTACGCCAAACGCCGCGCCGTCGACGGCTTCCGCCATAACCGGAACCTCTCCGATCCTTCATCCATCTCCTCCGCCTACGCCGACGGCAAGGCGCAGCTTGAAGTTGCCAAGAGACAGTCCGCCGTCTACTCCCTCTTCTCGCCCAAGGCCAAGAGCATCATGGAGGCTCATCACACAAACTGA

Protein sequence

MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSAVYSLFSPKAKSIMEAHHTN

Homology

[Close]

BLAST of Spg021974 vs. NCBI nr
Match: XP_022932898.1 (LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-containing protein 4 [Cucurbita maxima] >XP_023531294.1 LYR motif-containing protein 4 [Cucurbita pepo subsp. pepo] >KAG7021536.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.9 bits (424), Expect = 3.9e-38
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVAKRQS VYSLFSPK KSIMEAHHTN
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of Spg021974 vs. NCBI nr
Match: XP_038879775.1 (LYR motif-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 158.7 bits (400), Expect = 2.4e-35
Identity = 80/90 (88.89%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          M  PTRSE+LSLLRS LRTARHFCDYNIREYAKRRAVDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MVAPTRSEALSLLRSFLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVAKRQSAVYSL++PK KSIME H TN
Sbjct: 61 AQLEVAKRQSAVYSLYAPKVKSIMEPHRTN 90

[Close]

BLAST of Spg021974 vs. NCBI nr
Match: XP_011660289.1 (LYR motif-containing protein 4 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 9.0e-35
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MA+PTRSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVAKRQSAVYSL+ PK KSIMEAH  N
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

[Close]

BLAST of Spg021974 vs. NCBI nr
Match: XP_008453246.1 (PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif-containing protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.2e-34
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MA PTRSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVAKRQSA+YSL++PK KSIMEAH  N
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of Spg021974 vs. NCBI nr
Match: XP_022134602.1 (LYR motif-containing protein 4-like [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MATPTR+E+LSLLRSLLRTARHFCDYN+REYAKRRAVDGFRHNRNLSDPSSISSAYADG+
Sbjct: 1  MATPTRTEALSLLRSLLRTARHFCDYNVREYAKRRAVDGFRHNRNLSDPSSISSAYADGR 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVA+RQS VYS F+PK KSIM+ H  N
Sbjct: 61 AQLEVARRQSTVYSFFAPKVKSIMDPHPAN 90

[Close]

BLAST of Spg021974 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-09
Identity = 31/77 (40.26%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MA  +R++ L L R+++R ++HF  YN R YA RR  D FR N+N+ DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQSAVYSLFS 78
            LE+ +RQ  +  L+S
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

[Close]

BLAST of Spg021974 vs. ExPASy Swiss-Prot
Match: B8JLQ0 (LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-06
Identity = 29/88 (32.95%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MA+ +R++ +SL R L++ ++ F  YN R YA RR  DGFR N ++ +P ++       +
Sbjct: 1  MASCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAR 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHH 89
            L V KRQ ++  L+S +   + +  H
Sbjct: 61 ENLAVIKRQVSIGHLYSAQRTVVEKEPH 88

[Close]

BLAST of Spg021974 vs. ExPASy Swiss-Prot
Match: Q6Q560 (Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ISD11 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.4e-06
Identity = 26/74 (35.14%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 4  PTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQL 63
          PTR + LSL +  ++ A  F +YN REY   +    FR N N  DP  + + + + K  L
Sbjct: 7  PTRRQVLSLYKEFIKNANQFNNYNFREYFLSKTRTTFRKNMNQQDPKVLMNLFKEAKNDL 66

Query: 64 EVAKRQSAVYSLFS 78
           V KRQS +  +++
Sbjct: 67 GVLKRQSVISQMYT 80

[Close]

BLAST of Spg021974 vs. ExPASy Swiss-Prot
Match: O46098 (Protein bcn92 OS=Drosophila melanogaster OX=7227 GN=bcn92 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.2e-06
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 5  TRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLE 64
          TR ++++L R+LLR +     YN R YA R+  D FR NR+  D + I    A+G+  LE
Sbjct: 3  TRRQAITLYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEIDRQMAEGQQNLE 62

Query: 65 VAKRQSAVYSLFS 78
          + +RQ  +  L+S
Sbjct: 63 LIRRQVIIGHLYS 75

[Close]

BLAST of Spg021974 vs. ExPASy Swiss-Prot
Match: Q54FN9 (LYR motif-containing protein 4 OS=Dictyostelium discoideum OX=44689 GN=lyrm4 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 9.2e-06
Identity = 29/72 (40.28%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 6  RSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEV 65
          +S  L L RSL+R ++ F  YN REY+ RR   GFR N+N  D +       D    LE+
Sbjct: 4  KSVVLHLYRSLVRESKKFSSYNFREYSLRRVSVGFRENKN-KDQNETKELIQDALKNLEM 63

Query: 66 AKRQSAVYSLFS 78
           KRQ+ + S++S
Sbjct: 64 VKRQAFINSMYS 74

[Close]

BLAST of Spg021974 vs. ExPASy TrEMBL
Match: A0A6J1IC29 (LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVAKRQS VYSLFSPK KSIMEAHHTN
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of Spg021974 vs. ExPASy TrEMBL
Match: A0A6J1F322 (LYR motif-containing protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111439443 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38
Identity = 86/90 (95.56%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSI  AYADGK
Sbjct: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSIVVAYADGK 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVAKRQS VYSLFSPK KSIMEAHHTN
Sbjct: 61 AQLEVAKRQSTVYSLFSPKVKSIMEAHHTN 90

[Close]

BLAST of Spg021974 vs. ExPASy TrEMBL
Match: A0A0A0LPH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 4.4e-35
Identity = 80/90 (88.89%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MA+PTRSE+LSLLRSL+RTARHF DYNIREYAKRRAVDGFRHNRNLSDP SISSAYADGK
Sbjct: 1  MASPTRSEALSLLRSLIRTARHFSDYNIREYAKRRAVDGFRHNRNLSDPPSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVAKRQSAVYSL+ PK KSIMEAH  N
Sbjct: 61 AQLEVAKRQSAVYSLYGPKVKSIMEAHRIN 90

[Close]

BLAST of Spg021974 vs. ExPASy TrEMBL
Match: A0A5A7UTC8 (LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002810 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.7e-35
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MA PTRSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVAKRQSA+YSL++PK KSIMEAH  N
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of Spg021974 vs. ExPASy TrEMBL
Match: A0A1S3BV74 (LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.7e-35
Identity = 78/90 (86.67%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1  MATPTRSESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGK 60
          MA PTRSE+LSLLRSL+RT+R FCDYNIREYAKRR VDGFRHNRNLSDPSSISSAYADGK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQSAVYSLFSPKAKSIMEAHHTN 91
          AQLEVAKRQSA+YSL++PK KSIMEAH  N
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 90

[Close]

BLAST of Spg021974 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 94.0 bits (232), Expect = 6.7e-20
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 7  SESLSLLRSLLRTARHFCDYNIREYAKRRAVDGFRHNRNLSDPSSISSAYADGKAQLEVA 66
          SE LSL R+LLR  R F DYNIREY+KRR +DGFR N+NL+DPS ++ AYA+ K QL VA
Sbjct: 5  SEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLFVA 64

Query: 67 KRQSAVYSLFSPKAKSIME 86
          +R   VY  + PK K+IME
Sbjct: 65 ERVLKVYLAYPPKTKNIME 83

The following BLAST results are available for this feature:

BLAST of Spg021974 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932898.1	3.9e-38	95.56	LYR motif-containing protein 4 [Cucurbita moschata] >XP_022973088.1 LYR motif-co...	[more]
XP_038879775.1	2.4e-35	88.89	LYR motif-containing protein 4-like [Benincasa hispida]	[more]
XP_011660289.1	9.0e-35	88.89	LYR motif-containing protein 4 [Cucumis sativus]	[more]
XP_008453246.1	1.2e-34	86.67	PREDICTED: LYR motif-containing protein 4 [Cucumis melo] >KAA0057977.1 LYR motif...	[more]
XP_022134602.1	1.5e-34	85.56	LYR motif-containing protein 4-like [Momordica charantia]	[more]

BLAST of Spg021974 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K215	5.2e-09	40.26	LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1	[more]
B8JLQ0	1.1e-06	32.95	LYR motif-containing protein 4 OS=Danio rerio OX=7955 GN=lyrm4 PE=3 SV=1	[more]
Q6Q560	5.4e-06	35.14	Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292...	[more]
O46098	9.2e-06	38.36	Protein bcn92 OS=Drosophila melanogaster OX=7227 GN=bcn92 PE=1 SV=1	[more]
Q54FN9	9.2e-06	40.28	LYR motif-containing protein 4 OS=Dictyostelium discoideum OX=44689 GN=lyrm4 PE=...	[more]

BLAST of Spg021974 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IC29	1.9e-38	95.56	LYR motif-containing protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111471615 PE=4 ...	[more]
A0A6J1F322	1.9e-38	95.56	LYR motif-containing protein 4 OS=Cucurbita moschata OX=3662 GN=LOC111439443 PE=...	[more]
A0A0A0LPH2	4.4e-35	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012090 PE=4 SV=1	[more]
A0A5A7UTC8	5.7e-35	86.67	LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BV74	5.7e-35	86.67	LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1	[more]

BLAST of Spg021974 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61220.1	6.7e-20	60.76	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 8..64 e-value: 2.7E-18 score: 65.8
None	No IPR available	PANTHER	PTHR47158:SF1	OS08G0239000 PROTEIN	coord: 1..88
None	No IPR available	PANTHER	PTHR47158	OS08G0239000 PROTEIN	coord: 1..88
None	No IPR available	CDD	cd20264	Complex1_LYR_LYRM4	coord: 19..76 e-value: 2.68562E-24 score: 84.8785

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg021974.1	Spg021974.1	mRNA