Spg021816 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg021816
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like
Location	scaffold2: 6272368 .. 6274253 (-)
RNA-Seq Expression	Spg021816
Synteny	Spg021816

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAGTTTAGGATTTTTTTTTTAGATCAATATTAAACGTTTTACATTCACATAGGTTTTTATATAAAATTTGTATATATTTGTTTGGACATTATTAACAATAAATAAAACCAAAAAGATGGGCAAAAATATTTTGACCACATAAAAAAAATAAATTTAAAAAAAAAAAAAAACAAAAAAAAAACAAAAAAAAAAGAAGTCAAAACTGGAAATTAAATAGTAACAGAAGCAGTGTGTCGTTTGGTCGATGACAACCGTTTCCCGCTTTCACAGCCAAACCAACCAACAAACCAGAAACGTTCTTTGATCGATCTCCTTTTTTCCCAAACCCTAGACCTGACTCAATTTCGCATTTCGAGTTCAAGACTCTGCTCTTCAGAAATCGATACCTGAAAATCCTCCATTCGTCTTTCTACTACCTGAAATTTTTAGTACAGGTCGATTCAATCATGTCTCGCGTTGAACCGAATGTTCCGGATTCTTGCTGTATCTCGCCTCGCTTTCGGAGCAACAGTTTTCGCCGGAGTTTCCGCTACCAGAGGCTTCCGTCGCAGCTCCTCCGCCTCTCCGTCTTAAAATTGGACGGCTCTTCCTTCGGTAACTTCCTCCCCCTTTTGTAATCGATTCATATATCTTCGCTCTCTGTTGCAAATCTTGCCAGGTTGGACGAACATTTCTGTGAATGATCTGTGTGTATGTTCGGGAACGTTTTGATGTTGATTTGAGAAATTATTTTCCAAATGTTTGGATGTTCTGCCCCTGGACTGGATTGGATTAATTACCATTGATTGTTGAAAGTTTTTAGGTTGTCGATGTGCTTATTTAATAGAATGTTTGGTGATACATATGCATAGAGGTGCAAGTTGCAAGGTCAGCGACGGTGGCAAAGCTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGATGTCAAGATTTCATGGTACGCTGTTGGGGATTGGGACTACTGAACTGCGCATATTAATGTAATCTGTCGATTGAAAATGTGTTCAATTGTTTATTCGGTGCAAATGCAGGCCACATGTGTGGGGTCATTTTTGCTTAGGCTATAAAGATTACAAGCTGATCGACGACAAATCACATATCAAACGCTTTGGAATCAGGGATGGTGATCAGGTATTCCCCTCGAATGCTTAACATTGCTTTGTTTATAGTTTTTTCTCTCTCTTTTGTTTATGACGACGTTGAGTCTTGTCTTGTATTTGCTCGAGTAATTAATGAGATATATATGTTCCCCCATGCAGCTGCATTTTGTGAACCTTGTAGCTTAATTTGTGCCAAGAATCTGTGGATTTGAGATGGCCCAAAAAAAGAAATGGATAGAGGGAATTAGGCAGGTTAAACGGCTTCTGGTATAAAGTGGTCAGAAGGTTTTGGGTGTGAATTATTGTCAAGTGGTCAGATGGGTCTTTTTCTTTTATTTTCCTGATATTAAATTGGAAGCCTTGGTAAATATATATGTAGGATGAATACATTTCTTTTGTGCCACTCAAGTCTCCACTTTCCTTCTTTCAATCCAAAAATAAAGTCCATTAGAAGATCAGTCTCTAGGTATTCAAATTGCTTTAAGAAGAGGAAACAAAAGGAAGAATGGCGATGAAGATGCTCAAGTGATCTGAAATTCATACATCTTTTTGGAGAATATGAGATGATGAATGGCATTCCCTGATCTACTTGGTGCATGGGAGAGTGCAAGCTCTACAGTCTGATGCTATGAATTGTCTGAAGATTTTCAGCTGGGCATACATGTTTTGGTGGCCTTAATTTATGCACTTAGAAAGTTGTTTTCCCTTGTAAGTTGAAGTGTTATAGAGAGATTCATTTGATTTAAATAATACAAGTAGTGTTTCTAGC

mRNA sequence

ATGTCTCGCGTTGAACCGAATGTTCCGGATTCTTGCTGTATCTCGCCTCGCTTTCGGAGCAACAGTTTTCGCCGGAGTTTCCGCTACCAGAGGCTTCCGTCGCAGCTCCTCCGCCTCTCCGTCTTAAAATTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGTCAGCGACGGTGGCAAAGCTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGATGTCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTAGGCTATAAAGATTACAAGCTGATCGACGACAAATCACATATCAAACGCTTTGGAATCAGGGATGGTGATCAGCTGCATTTTGTGAACCTTGTAGCTTAA

Coding sequence (CDS)

ATGTCTCGCGTTGAACCGAATGTTCCGGATTCTTGCTGTATCTCGCCTCGCTTTCGGAGCAACAGTTTTCGCCGGAGTTTCCGCTACCAGAGGCTTCCGTCGCAGCTCCTCCGCCTCTCCGTCTTAAAATTGGACGGCTCTTCCTTCGAGGTGCAAGTTGCAAGGTCAGCGACGGTGGCAAAGCTTAGAGACGCGGTGGAGAGTGTTTTCTGTGGAATGTCGATGAATAAAGATGTCAAGATTTCATGGCCACATGTGTGGGGTCATTTTTGCTTAGGCTATAAAGATTACAAGCTGATCGACGACAAATCACATATCAAACGCTTTGGAATCAGGGATGGTGATCAGCTGCATTTTGTGAACCTTGTAGCTTAA

Protein sequence

MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVAKLRDAVESVFCGMSMNKDVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHFVNLVA

Homology

[Close]

BLAST of Spg021816 vs. NCBI nr
Match: XP_023531556.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           MSR+EPN+PDSCCISPRFRSNSFRRS RYQRLPS+LL LSVLKLDGSSFEVQVAR A+VA
Sbjct: 21  MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 80

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
           KLR+AVESVFCGMSMN+ DVKISWPHVW HFCL YK YKLID+KS IKRFGIRDGD LHF
Sbjct: 81  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 140

Query: 121 VNLVA 125
           VN VA
Sbjct: 141 VNRVA 145

[Close]

BLAST of Spg021816 vs. NCBI nr
Match: XP_023531557.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 108/125 (86.40%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           MSR+EPN+PDSCCISPRFRSNSFRRS RYQRLPS+LL LSVLKLDGSSFEVQVAR A+VA
Sbjct: 1   MSRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
           KLR+AVESVFCGMSMN+ DVKISWPHVW HFCL YK YKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNLVA 125
           VN VA
Sbjct: 121 VNRVA 125

[Close]

BLAST of Spg021816 vs. NCBI nr
Match: KAG7021772.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 221.5 bits (563), Expect = 4.1e-54
Identity = 107/125 (85.60%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           M R+EPN+PDSCCISPRFRSNSFRRS RYQRLPS+LL LSVLKLDGSSFEVQVAR A+VA
Sbjct: 5   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 64

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
           KLR+AVESVFCGMSMN+ DVKISWPHVW HFCL YK YKLID+KS IKRFGIRDGD LHF
Sbjct: 65  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 124

Query: 121 VNLVA 125
           VN VA
Sbjct: 125 VNRVA 129

[Close]

BLAST of Spg021816 vs. NCBI nr
Match: XP_022927502.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata] >XP_022927511.1 U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata])

HSP 1 Score: 221.5 bits (563), Expect = 4.1e-54
Identity = 107/125 (85.60%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           M R+EPN+PDSCCISPRFRSNSFRRS RYQRLPS+LL LSVLKLDGSSFEVQVAR A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
           KLR+AVESVFCGMSMN+ DVKISWPHVW HFCL YK YKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNLVA 125
           VN VA
Sbjct: 121 VNRVA 125

[Close]

BLAST of Spg021816 vs. NCBI nr
Match: XP_022973901.1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 218.8 bits (556), Expect = 2.7e-53
Identity = 105/125 (84.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           M R+EPN+PDSCCISPRFRSNSFRRS RYQRLPS+LL LSVLKLDGSSFEVQVAR A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
           KLR+AVESVFCGM MN+ DVKISWPHVW HFCL YK YKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNLVA 125
           VN +A
Sbjct: 121 VNRIA 125

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BLAST of Spg021816 vs. ExPASy Swiss-Prot
Match: Q84WS8 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP25 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 37  LRLSVLKLDGSSFEVQVARSATVAKLRDAVESVFCGMSMNK--DVKISWPHVWGHFCLGY 96
           +RLSV+KLDGSS +V V  SAT+  L+  ++     M         ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KDYKLIDDKSHIKRFGIRDGDQLHFVNLV 124
            + KL+DD + ++  GIR+  Q+ F+  V
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFMPYV 140

[Close]

BLAST of Spg021816 vs. ExPASy Swiss-Prot
Match: Q9BV90 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP25 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.2e-05
Identity = 27/89 (30.34%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVARSATVAKLRDAVESVFCGMSMNKD---VKISWPHVWGHFC 94
           Q + + V K+DG    V V +SATV  L+ A++  +  +   ++     ISW +VW  + 
Sbjct: 39  QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQR-YVQLKQEREGGIQHISWSYVWRTYH 98

Query: 95  LGYKDYKLIDDKSHIKRFGIRDGDQLHFV 121
           L     KL +D+  ++ +GIR+ D++ F+
Sbjct: 99  LTSAGEKLTEDRKKLRDYGIRNRDEVSFI 126

[Close]

BLAST of Spg021816 vs. ExPASy Swiss-Prot
Match: Q8VIK1 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 GN=Snrnp25 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.8e-05
Identity = 26/89 (29.21%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVARSATVAKLRDAVESVFCGMSMNKD---VKISWPHVWGHFC 94
           Q + + V K+DG    V V ++ATV  L+ A++  +  +   ++     ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLKQEREGGVQHISWSYVWRTYH 89

Query: 95  LGYKDYKLIDDKSHIKRFGIRDGDQLHFV 121
           L     KL +D+  ++ +GIR+ D++ F+
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117

[Close]

BLAST of Spg021816 vs. ExPASy Swiss-Prot
Match: Q3ZBQ4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=SNRNP25 PE=2 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 6.3e-05
Identity = 26/89 (29.21%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 35  QLLRLSVLKLDGSSFEVQVARSATVAKLRDAVESVFCGMSMNKD---VKISWPHVWGHFC 94
           Q + + V K+DG    V V ++ATV  L+ A++  +  +   ++     ISW +VW  + 
Sbjct: 30  QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQR-YVQLRQEREGGIQHISWSYVWRTYH 89

Query: 95  LGYKDYKLIDDKSHIKRFGIRDGDQLHFV 121
           L     KL +D+  ++ +GIR+ D++ F+
Sbjct: 90  LTSAGEKLTEDRKKLRDYGIRNRDEVSFI 117

[Close]

BLAST of Spg021816 vs. ExPASy TrEMBL
Match: A0A6J1EHC7 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschata OX=3662 GN=LOC111434307 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.0e-54
Identity = 107/125 (85.60%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           M R+EPN+PDSCCISPRFRSNSFRRS RYQRLPS+LL LSVLKLDGSSFEVQVAR A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
           KLR+AVESVFCGMSMN+ DVKISWPHVW HFCL YK YKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMSMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNLVA 125
           VN VA
Sbjct: 121 VNRVA 125

[Close]

BLAST of Spg021816 vs. ExPASy TrEMBL
Match: A0A6J1I9W9 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111472494 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 105/125 (84.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           M R+EPN+PDSCCISPRFRSNSFRRS RYQRLPS+LL LSVLKLDGSSFEVQVAR A+VA
Sbjct: 1   MPRIEPNIPDSCCISPRFRSNSFRRSLRYQRLPSRLLHLSVLKLDGSSFEVQVARKASVA 60

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
           KLR+AVESVFCGM MN+ DVKISWPHVW HFCL YK YKLID+KS IKRFGIRDGD LHF
Sbjct: 61  KLREAVESVFCGMLMNREDVKISWPHVWSHFCLCYKHYKLIDEKSRIKRFGIRDGDLLHF 120

Query: 121 VNLVA 125
           VN +A
Sbjct: 121 VNRIA 125

[Close]

BLAST of Spg021816 vs. ExPASy TrEMBL
Match: A0A0A0LT94 (Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.5e-49
Identity = 100/123 (81.30%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           MS +EP VPDSCCISPRF SNSFRRS RY RLP QLLRLSVLKLDGSSFEVQV R+ATVA
Sbjct: 1   MSHIEPIVPDSCCISPRFHSNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 60

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
            +RDAVESVFC MSMNK D  ISWPHVWGHFCL YK +KL+DDKS I+ FGIRDGDQLHF
Sbjct: 61  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 120

Query: 121 VNL 123
           V L
Sbjct: 121 VEL 123

[Close]

BLAST of Spg021816 vs. ExPASy TrEMBL
Match: A0A5A7U4H4 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00840 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49
Identity = 99/123 (80.49%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           MS++EP VPDSCCISPRF +NSFRRS RY RLP QLLRLSVLKLDGSSFEVQV R+ATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
            +RDAVESVFC MSMNK D  ISWPHVWGHFCL YK +KL+DDKS I+ FGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 VNL 123
           V L
Sbjct: 124 VEL 126

[Close]

BLAST of Spg021816 vs. ExPASy TrEMBL
Match: A0A1S3BA12 (U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487425 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.5e-49
Identity = 99/123 (80.49%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 1   MSRVEPNVPDSCCISPRFRSNSFRRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVA 60
           MS++EP VPDSCCISPRF +NSFRRS RY RLP QLLRLSVLKLDGSSFEVQV R+ATVA
Sbjct: 4   MSQIEPIVPDSCCISPRFHTNSFRRSLRYNRLPPQLLRLSVLKLDGSSFEVQVERTATVA 63

Query: 61  KLRDAVESVFCGMSMNK-DVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHF 120
            +RDAVESVFC MSMNK D  ISWPHVWGHFCL YK +KL+DDKS I+ FGIRDGDQLHF
Sbjct: 64  AVRDAVESVFCEMSMNKEDFNISWPHVWGHFCLCYKHFKLMDDKSRIQHFGIRDGDQLHF 123

Query: 121 VNL 123
           V L
Sbjct: 124 VEL 126

[Close]

BLAST of Spg021816 vs. TAIR 10
Match: AT4G32270.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 118.6 bits (296), Expect = 3.5e-27
Identity = 51/101 (50.50%), Postives = 76/101 (75.25%), Query Frame = 0


Query: 24  RRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVAKLRDAVESVFCGMSMNKDVKISW 83
           RRSF Y ++P + ++L+VLKLDGSSF +QV ++ATV +L+ AVE+ F  + ++   KISW
Sbjct: 25  RRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELKMAVEAAFSHLPISGPGKISW 84

Query: 84  PHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHFVNLVA 125
           PHVWG FCL Y+D +LI++  ++  FGI+DGDQL F+  ++
Sbjct: 85  PHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 125

[Close]

BLAST of Spg021816 vs. TAIR 10
Match: AT5G25340.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-24
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 24  RRSFRYQRLPSQLLRLSVLKLDGSSFEVQVARSATVAKLRDAVESVFCGMSMNKDVKISW 83
           RR+F Y +LP++ +RLSVLKLDGSSF+V V  SATV  L+ A+E+ F  +      KISW
Sbjct: 6   RRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGPSKISW 65

Query: 84  PHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHFVNLVA 125
            HVWGHFCL +   KLI D   I  +G++DGD++ F N V+
Sbjct: 66  SHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDEVRFKNHVS 106

[Close]

BLAST of Spg021816 vs. TAIR 10
Match: AT1G80060.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-23
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 0


Query: 14  ISPRFRSN---------SFRRSFRYQRLPSQ-LLRLSVLKLDGSSFEVQVARSATVAKLR 73
           I PRF S+         S RRS  Y +LP Q  ++LSV+KL+GS F+V+VA+  +VA+L+
Sbjct: 21  IDPRFLSSFALNDGGSISGRRS-SYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAELK 80

Query: 74  DAVESVFCGMSMNKDVKISWPHVWGHFCLGYKDYKLIDDKSHIKRFGIRDGDQLHFV 121
            AVE VF    +     ISW HVWGHFCL Y+D +L++DK+ I+  G+ DGDQLHFV
Sbjct: 81  RAVEQVFTISPLEGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQLHFV 136

[Close]

BLAST of Spg021816 vs. TAIR 10
Match: AT4G32270.2 (Ubiquitin-like superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 9.9e-22
Identity = 45/93 (48.39%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 32  LPSQLLRLSVLKLDGSSFEVQVARSATVAKLRDAVESVFCGMSMNKDVKISWPHVWGHFC 91
           +P + ++L+VLKLDGSSF   V ++ATV +L+ AVE+ F  + ++   KISWPHVWG FC
Sbjct: 1   MPEEPIKLTVLKLDGSSF---VLKTATVGELKMAVEAAFSHLPISGPGKISWPHVWGQFC 60

Query: 92  LGYKDYKLIDDKSHIKRFGIRDGDQLHFVNLVA 125
           L Y+D +LI++  ++  FGI+DGDQL F+  ++
Sbjct: 61  LSYEDKRLINESEYLTEFGIKDGDQLRFIRHIS 90

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BLAST of Spg021816 vs. TAIR 10
Match: AT3G07860.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-11
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 37  LRLSVLKLDGSSFEVQVARSATVAKLRDAVESVFCGMSMNK--DVKISWPHVWGHFCLGY 96
           +RLSV+KLDGSS +V V  SAT+  L+  ++     M         ISW HVW +FCL  
Sbjct: 52  MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111

Query: 97  KDYKLIDDKSHIKRFGIRDGDQLHFVNLV 124
            + KL+DD + ++  GIR+  Q+ F+  V
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQVTFMPYV 140

The following BLAST results are available for this feature:

BLAST of Spg021816 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531556.1	1.1e-54	86.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X1 [Cucurbit...	[more]
XP_023531557.1	1.1e-54	86.40	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 [Cucurbit...	[more]
KAG7021772.1	4.1e-54	85.60	U11/U12 small nuclear ribonucleoprotein 25 kDa protein, partial [Cucurbita argyr...	[more]
XP_022927502.1	4.1e-54	85.60	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita moschata]...	[more]
XP_022973901.1	2.7e-53	84.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like [Cucurbita maxima]	[more]

BLAST of Spg021816 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WS8	2.2e-10	40.45	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana O...	[more]
Q9BV90	2.2e-05	30.34	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo sapiens OX=9606 G...	[more]
Q8VIK1	4.8e-05	29.21	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus musculus OX=10090 ...	[more]
Q3ZBQ4	6.3e-05	29.21	U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos taurus OX=9913 GN=...	[more]

BLAST of Spg021816 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHC7	2.0e-54	85.60	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita moschat...	[more]
A0A6J1I9W9	1.3e-53	84.00	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like OS=Cucurbita maxima ...	[more]
A0A0A0LT94	1.5e-49	81.30	Ubiquitin_4 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G231020...	[more]
A0A5A7U4H4	2.5e-49	80.49	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]
A0A1S3BA12	2.5e-49	80.49	U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like isoform X2 OS=Cucumi...	[more]

BLAST of Spg021816 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32270.1	3.5e-27	50.50	Ubiquitin-like superfamily protein	[more]
AT5G25340.1	4.7e-24	51.49	Ubiquitin-like superfamily protein	[more]
AT1G80060.1	2.3e-23	49.57	Ubiquitin-like superfamily protein	[more]
AT4G32270.2	9.9e-22	48.39	Ubiquitin-like superfamily protein	[more]
AT3G07860.1	1.6e-11	40.45	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040610	SNRNP25, ubiquitin-like domain	PFAM	PF18036	Ubiquitin_4	coord: 37..121 e-value: 1.5E-24 score: 85.8
IPR040610	SNRNP25, ubiquitin-like domain	CDD	cd17058	Ubl_SNRNP25	coord: 37..120 e-value: 1.18824E-33 score: 110.686
None	No IPR available	GENE3D	3.10.20.90		coord: 32..124 e-value: 6.7E-31 score: 108.1
None	No IPR available	PANTHER	PTHR14942:SF2	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 5..121
IPR039690	U11/U12 small nuclear ribonucleoprotein 25kDa protein	PANTHER	PTHR14942	U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN	coord: 5..121
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 33..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg021816.1	Spg021816.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005689	U12-type spliceosomal complex