Spg021801 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021801
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionBSD domain-containing family protein
Locationscaffold2: 6154168 .. 6155191 (+)
RNA-Seq ExpressionSpg021801
SyntenySpg021801
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGCATTCGTTTTCAGTTGGTTTCTCATTTGCCTATCTTTAACGTTTAAATAATCTTCTTTGGACTGAATGGATGATGGCCAATCTAATGACAGAAGTTTCATGCAATCATGAAGCATTATTTATTTTAGGCTCGCACTCACGATGAACATCTTCATTTAAGTGCATTTTACTTGAAGTTTCAGATTAATAACGTGACACCCCAAACATCTTTAATCTCATTTGGTAGATTGTCGAAGCAAGAGACCTACTTCTGAATAAACTTCAAAGAAAAGAGAAATCACAGGTGAATTCTGAGGATACTTGCGACAACAATTTGGCTTGTAGCACTCAAAAGGGAAATATGTCATCTGAGGAAAAAGTAAACTCGACTCAAATCATTCAAGGTGGTGAAGGATTGGAAATTCAGGATGGAGATGGAGATGGAGAGACTACCAATAAACAGTTGGAAAAGGCAGATTCAAAAACTTGTAGAGATGCCAAAGAAAGGGTTGGACCTGAAGGTTTGTCATTCAGTGATATAGAGGATGATGGGACCGATTTGTCTGGAAGATTCTCTGTAACAAACCCCCCAAGGACTTCTTCATCAACCGAGGCCAGTGATTGGGTTCAGCTGCGTGAAAATCTAGACTCAAAGCTGGATCAACAGAGGCCATGGAAGCAGGACAGAGATTCAGAAGCTGGGGATTCAAGTGATTGGTTTAATGTGGATGAATTTGATTAGAAAGGTGTACATAACCACTAGCACACCTCGTATTTCCCCAACCTCAATCCACTTTTCTTTCCCCAAAAAGTTTTTGAGTAAAAAAAAAAAACACACCTTAATTTTCTTTGCAGTAGAGTTTTTTTTTTTTTTCCCCAAAAATTCTTTGCAGTAGAGTTGTCACAAAGGCTTAGGTCTTATTTATATTTGTCTTCCCTCTAAGGATAACTTTTGTGCATATGTTTTCTTCATAAGGTGTTTGGATTCTAGTAGAGAATTTAACACAATGTTATTTCCTCAATTGAACATCCCAACCAA

mRNA sequence

ATGCATGCATTCATTGTCGAAGCAAGAGACCTACTTCTGAATAAACTTCAAAGAAAAGAGAAATCACAGGTGAATTCTGAGGATACTTGCGACAACAATTTGGCTTGTAGCACTCAAAAGGGAAATATGTCATCTGAGGAAAAAGTAAACTCGACTCAAATCATTCAAGGTGGTGAAGGATTGGAAATTCAGGATGGAGATGGAGATGGAGAGACTACCAATAAACAGTTGGAAAAGGCAGATTCAAAAACTTGTAGAGATGCCAAAGAAAGGGTTGGACCTGAAGGTTTGTCATTCAGTGATATAGAGGATGATGGGACCGATTTGTCTGGAAGATTCTCTGTAACAAACCCCCCAAGGACTTCTTCATCAACCGAGGCCAGTGATTGGGTTCAGCTGCGTGAAAATCTAGACTCAAAGCTGGATCAACAGAGGCCATGGAAGCAGGACAGAGATTCAGAAGCTGGGGATTCAAGTGATTGGTTTAATGTGGATGAATTTGATTAG

Coding sequence (CDS)

ATGCATGCATTCATTGTCGAAGCAAGAGACCTACTTCTGAATAAACTTCAAAGAAAAGAGAAATCACAGGTGAATTCTGAGGATACTTGCGACAACAATTTGGCTTGTAGCACTCAAAAGGGAAATATGTCATCTGAGGAAAAAGTAAACTCGACTCAAATCATTCAAGGTGGTGAAGGATTGGAAATTCAGGATGGAGATGGAGATGGAGAGACTACCAATAAACAGTTGGAAAAGGCAGATTCAAAAACTTGTAGAGATGCCAAAGAAAGGGTTGGACCTGAAGGTTTGTCATTCAGTGATATAGAGGATGATGGGACCGATTTGTCTGGAAGATTCTCTGTAACAAACCCCCCAAGGACTTCTTCATCAACCGAGGCCAGTGATTGGGTTCAGCTGCGTGAAAATCTAGACTCAAAGCTGGATCAACAGAGGCCATGGAAGCAGGACAGAGATTCAGAAGCTGGGGATTCAAGTGATTGGTTTAATGTGGATGAATTTGATTAG

Protein sequence

MHAFIVEARDLLLNKLQRKEKSQVNSEDTCDNNLACSTQKGNMSSEEKVNSTQIIQGGEGLEIQDGDGDGETTNKQLEKADSKTCRDAKERVGPEGLSFSDIEDDGTDLSGRFSVTNPPRTSSSTEASDWVQLRENLDSKLDQQRPWKQDRDSEAGDSSDWFNVDEFD
Homology
BLAST of Spg021801 vs. NCBI nr
Match: KAG6587879.1 (hypothetical protein SDJN03_16444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 216.9 bits (551), Expect = 1.4e-52
Identity = 123/167 (73.65%), Postives = 134/167 (80.24%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCD-NNLACSTQKGNMSSEEKVNSTQIIQGGEGLEI 64
           IVEAR+LLL+K QRKEKSQVNSEDTCD NNL C TQ GNM SEEK NSTQ I+GGEGLEI
Sbjct: 248 IVEARNLLLDKFQRKEKSQVNSEDTCDNNNLVCGTQMGNMPSEEKENSTQTIEGGEGLEI 307

Query: 65  QDGDGDGETTNKQLEKADSKTCRDAKERVGPEG-LSFSDIEDDGTDLSGRFSVTNPPRTS 124
              DG+ E TN QL+ AD KT  D KER G EG +SFS+IED GTDLSG+FSV  PPRTS
Sbjct: 308 M--DGEEENTNHQLKMADPKTSADVKERSGLEGTISFSEIEDYGTDLSGKFSVITPPRTS 367

Query: 125 SSTEASDWVQLRENLDSKLD-QQRPWKQDRDSEAGDSSDWFNVDEFD 169
           SSTE+SDWV L EN  SKLD QQR WKQD +S+ GDSSDWFNVDEFD
Sbjct: 368 SSTESSDWVHLHENAGSKLDQQQRTWKQDTESDGGDSSDWFNVDEFD 412

BLAST of Spg021801 vs. NCBI nr
Match: XP_023002875.1 (uncharacterized protein LOC111496608 [Cucurbita maxima])

HSP 1 Score: 215.3 bits (547), Expect = 4.0e-52
Identity = 122/168 (72.62%), Postives = 134/168 (79.76%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCD-NNLACSTQKGNMSSEEKVNSTQIIQGGEGLEI 64
           I+EAR+LLL+K QRKEKSQVNSEDTCD NNL C TQ GNM SEEK NSTQ I+GGEGL I
Sbjct: 247 IIEARNLLLDKFQRKEKSQVNSEDTCDNNNLVCGTQMGNMPSEEKENSTQTIEGGEGLGI 306

Query: 65  QDGDGDGETTNKQLEKADSKTCRDAKERVGPEG-LSFSDIEDDGTDLSGRFSVTNPPRTS 124
              DG+ E TN QL+ ADSKT  D KER G EG +SFS+IED GTDLSG+FSV  PPRTS
Sbjct: 307 M--DGEEENTNHQLKMADSKTSADVKERSGLEGTISFSEIEDYGTDLSGKFSVITPPRTS 366

Query: 125 SSTEASDWVQLRENLDSKLD--QQRPWKQDRDSEAGDSSDWFNVDEFD 169
           SSTE+SDWV L EN  SKLD  QQR WKQD +S+ GDSSDWFNVDEFD
Sbjct: 367 SSTESSDWVHLHENAGSKLDQQQQRTWKQDTESDGGDSSDWFNVDEFD 412

BLAST of Spg021801 vs. NCBI nr
Match: XP_022925051.1 (uncharacterized protein LOC111432412 [Cucurbita moschata])

HSP 1 Score: 214.9 bits (546), Expect = 5.2e-52
Identity = 122/167 (73.05%), Postives = 134/167 (80.24%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCD-NNLACSTQKGNMSSEEKVNSTQIIQGGEGLEI 64
           IVEAR+LLL+K QRKEKSQVNSEDTCD NNL C TQ GNM SEEK NSTQ I+GGEGLEI
Sbjct: 247 IVEARNLLLDKFQRKEKSQVNSEDTCDNNNLVCGTQMGNMPSEEKENSTQTIEGGEGLEI 306

Query: 65  QDGDGDGETTNKQLEKADSKTCRDAKERVGPEG-LSFSDIEDDGTDLSGRFSVTNPPRTS 124
              DG+ E TN QL+ AD KT  D KER G EG +SFS+IE+ GTDLSG+FSV  PPRTS
Sbjct: 307 M--DGEEENTNHQLKMADPKTSADVKERSGLEGTISFSEIENYGTDLSGKFSVITPPRTS 366

Query: 125 SSTEASDWVQLRENLDSKLD-QQRPWKQDRDSEAGDSSDWFNVDEFD 169
           SSTE+SDWV L EN  SKLD QQR WKQD +S+ GDSSDWFNVDEFD
Sbjct: 367 SSTESSDWVHLHENAGSKLDQQQRTWKQDTESDGGDSSDWFNVDEFD 411

BLAST of Spg021801 vs. NCBI nr
Match: KAG7021764.1 (hypothetical protein SDJN02_15491 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 214.9 bits (546), Expect = 5.2e-52
Identity = 122/167 (73.05%), Postives = 134/167 (80.24%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCD-NNLACSTQKGNMSSEEKVNSTQIIQGGEGLEI 64
           IVEAR+LLL+K QRKEKSQVNSEDTCD NNL C TQ GNM SEEK NSTQ I+GGEGLEI
Sbjct: 63  IVEARNLLLDKFQRKEKSQVNSEDTCDNNNLVCGTQMGNMPSEEKENSTQTIEGGEGLEI 122

Query: 65  QDGDGDGETTNKQLEKADSKTCRDAKERVGPEG-LSFSDIEDDGTDLSGRFSVTNPPRTS 124
              DG+ E TN QL+ AD KT  D KER G EG +SFS+IE+ GTDLSG+FSV  PPRTS
Sbjct: 123 M--DGEEENTNHQLKMADPKTSADVKERSGLEGTISFSEIENYGTDLSGKFSVITPPRTS 182

Query: 125 SSTEASDWVQLRENLDSKLD-QQRPWKQDRDSEAGDSSDWFNVDEFD 169
           SSTE+SDWV L EN  SKLD QQR WKQD +S+ GDSSDWFNVDEFD
Sbjct: 183 SSTESSDWVHLHENAGSKLDQQQRTWKQDTESDGGDSSDWFNVDEFD 227

BLAST of Spg021801 vs. NCBI nr
Match: XP_023530961.1 (uncharacterized protein LOC111793348 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.5 bits (545), Expect = 6.8e-52
Identity = 122/167 (73.05%), Postives = 133/167 (79.64%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCD-NNLACSTQKGNMSSEEKVNSTQIIQGGEGLEI 64
           IVEAR+LLL+K QRKEKSQVNSEDTCD NNL C TQ GNM SEEK  STQ  +GGEGLEI
Sbjct: 247 IVEARNLLLDKFQRKEKSQVNSEDTCDNNNLVCGTQMGNMPSEEKEKSTQTTEGGEGLEI 306

Query: 65  QDGDGDGETTNKQLEKADSKTCRDAKERVGPEG-LSFSDIEDDGTDLSGRFSVTNPPRTS 124
              DG+ E TN QL+ ADSKT  D KER G EG +SFS+IED GTDLSG+FSV  PPRTS
Sbjct: 307 M--DGEEENTNHQLKMADSKTSADVKERSGLEGTISFSEIEDYGTDLSGKFSVITPPRTS 366

Query: 125 SSTEASDWVQLRENLDSKLD-QQRPWKQDRDSEAGDSSDWFNVDEFD 169
           SSTE+SDWV L EN  SKLD QQR WKQD +S+ GDSSDWFNVDEFD
Sbjct: 367 SSTESSDWVHLHENAGSKLDQQQRTWKQDTESDGGDSSDWFNVDEFD 411

BLAST of Spg021801 vs. ExPASy TrEMBL
Match: A0A6J1KQ70 (uncharacterized protein LOC111496608 OS=Cucurbita maxima OX=3661 GN=LOC111496608 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.9e-52
Identity = 122/168 (72.62%), Postives = 134/168 (79.76%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCD-NNLACSTQKGNMSSEEKVNSTQIIQGGEGLEI 64
           I+EAR+LLL+K QRKEKSQVNSEDTCD NNL C TQ GNM SEEK NSTQ I+GGEGL I
Sbjct: 247 IIEARNLLLDKFQRKEKSQVNSEDTCDNNNLVCGTQMGNMPSEEKENSTQTIEGGEGLGI 306

Query: 65  QDGDGDGETTNKQLEKADSKTCRDAKERVGPEG-LSFSDIEDDGTDLSGRFSVTNPPRTS 124
              DG+ E TN QL+ ADSKT  D KER G EG +SFS+IED GTDLSG+FSV  PPRTS
Sbjct: 307 M--DGEEENTNHQLKMADSKTSADVKERSGLEGTISFSEIEDYGTDLSGKFSVITPPRTS 366

Query: 125 SSTEASDWVQLRENLDSKLD--QQRPWKQDRDSEAGDSSDWFNVDEFD 169
           SSTE+SDWV L EN  SKLD  QQR WKQD +S+ GDSSDWFNVDEFD
Sbjct: 367 SSTESSDWVHLHENAGSKLDQQQQRTWKQDTESDGGDSSDWFNVDEFD 412

BLAST of Spg021801 vs. ExPASy TrEMBL
Match: A0A6J1EB50 (uncharacterized protein LOC111432412 OS=Cucurbita moschata OX=3662 GN=LOC111432412 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 2.5e-52
Identity = 122/167 (73.05%), Postives = 134/167 (80.24%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCD-NNLACSTQKGNMSSEEKVNSTQIIQGGEGLEI 64
           IVEAR+LLL+K QRKEKSQVNSEDTCD NNL C TQ GNM SEEK NSTQ I+GGEGLEI
Sbjct: 247 IVEARNLLLDKFQRKEKSQVNSEDTCDNNNLVCGTQMGNMPSEEKENSTQTIEGGEGLEI 306

Query: 65  QDGDGDGETTNKQLEKADSKTCRDAKERVGPEG-LSFSDIEDDGTDLSGRFSVTNPPRTS 124
              DG+ E TN QL+ AD KT  D KER G EG +SFS+IE+ GTDLSG+FSV  PPRTS
Sbjct: 307 M--DGEEENTNHQLKMADPKTSADVKERSGLEGTISFSEIENYGTDLSGKFSVITPPRTS 366

Query: 125 SSTEASDWVQLRENLDSKLD-QQRPWKQDRDSEAGDSSDWFNVDEFD 169
           SSTE+SDWV L EN  SKLD QQR WKQD +S+ GDSSDWFNVDEFD
Sbjct: 367 SSTESSDWVHLHENAGSKLDQQQRTWKQDTESDGGDSSDWFNVDEFD 411

BLAST of Spg021801 vs. ExPASy TrEMBL
Match: A0A6J1H9V9 (uncharacterized protein LOC111461455 OS=Cucurbita moschata OX=3662 GN=LOC111461455 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.7e-46
Identity = 114/166 (68.67%), Postives = 127/166 (76.51%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCDNNLACSTQKGNMSSEEKVNSTQIIQGGEGLEIQ 64
           IVEAR+ LL+KLQ +  S+VNSEDTCD       QKGNM+SEEK NS+QII+GGEGLEI 
Sbjct: 247 IVEARNTLLDKLQTQNTSRVNSEDTCDQ------QKGNMASEEKANSSQIIEGGEGLEI- 306

Query: 65  DGDGDGETTNKQLEKADSKTCRDAKERVGPEGLSF--SDIEDDGTDLSGRFSVTNPPRTS 124
                GE TN+ LEKADSKT  DAK RV  EG+SF  SDIE DGTDL+GR   T PPRTS
Sbjct: 307 -----GEKTNQGLEKADSKTSTDAKNRVRLEGISFSDSDIEGDGTDLAGR---TKPPRTS 366

Query: 125 SSTEASDWVQLRENLDSKLDQQRPWKQDRDSEAGDSSDWFNVDEFD 169
           SS E++DWVQL EN   KLDQQ+ WKQDRDSE GDSSDWFNVDEFD
Sbjct: 367 SSAESNDWVQLHENPVPKLDQQKAWKQDRDSEGGDSSDWFNVDEFD 397

BLAST of Spg021801 vs. ExPASy TrEMBL
Match: A0A6J1JB79 (uncharacterized protein LOC111485208 OS=Cucurbita maxima OX=3661 GN=LOC111485208 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 5.1e-45
Identity = 112/167 (67.07%), Postives = 127/167 (76.05%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCDNNLACSTQKGNMSSEEKVNSTQIIQGGEGLEIQ 64
           IVEAR+ LL+KLQR+  S+VNSEDTCD       QKGNM+SEEK NS+QII+GGEGLEI 
Sbjct: 248 IVEARNTLLDKLQRQNTSRVNSEDTCDQ------QKGNMASEEKANSSQIIEGGEGLEI- 307

Query: 65  DGDGDGETTNKQLEKADSKTCRDAKERVGPEGLSFSDI---EDDGTDLSGRFSVTNPPRT 124
                GE TN+ LEKADSKT  DAK+ V  EG+SFSD    E+DGTDL+GR   T PPRT
Sbjct: 308 -----GEKTNQGLEKADSKTSTDAKKGVRLEGISFSDSDIEEEDGTDLAGR---TKPPRT 367

Query: 125 SSSTEASDWVQLRENLDSKLDQQRPWKQDRDSEAGDSSDWFNVDEFD 169
           SSS E++DWVQL EN   KL QQ+ WKQDRDSE GDSSDWFNVDEFD
Sbjct: 368 SSSAESNDWVQLHENPVPKLGQQKAWKQDRDSEGGDSSDWFNVDEFD 399

BLAST of Spg021801 vs. ExPASy TrEMBL
Match: A0A6J1BYC0 (uncharacterized protein LOC111006850 OS=Momordica charantia OX=3673 GN=LOC111006850 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.9e-32
Identity = 90/164 (54.88%), Postives = 109/164 (66.46%), Query Frame = 0

Query: 5   IVEARDLLLNKLQRKEKSQVNSEDTCDNNLACSTQKGNMSSEEKVNSTQIIQGGEGLEIQ 64
           I+EAR++LL   QRK+++QVNS+    NN  C T++GNM   EK  STQII+G EG    
Sbjct: 245 IIEARNILLEMHQRKKRAQVNSDHISTNNSVCGTKEGNMPPGEKAISTQIIKGSEG---- 304

Query: 65  DGDGDGETTNKQLEKADSKTCRDAKERVGPEGLSFSDIEDDGTDLSGRFSVTNPPRTSSS 124
                       LEKADS++ RDAKER G E +SFSD+E+DG+D SGRFSVT  P     
Sbjct: 305 ------------LEKADSESSRDAKERFGLEDISFSDMENDGSDFSGRFSVTKSP----- 364

Query: 125 TEASDWVQLRENLDSKLDQQRPWKQDRDSEAGDSSDWFNVDEFD 169
            E+  WV+L  NLDSKL Q    KQDRDSE G+SSDWFNVDEFD
Sbjct: 365 AESGGWVKLHGNLDSKLVQHTTSKQDRDSE-GESSDWFNVDEFD 386

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6587879.11.4e-5273.65hypothetical protein SDJN03_16444, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023002875.14.0e-5272.62uncharacterized protein LOC111496608 [Cucurbita maxima][more]
XP_022925051.15.2e-5273.05uncharacterized protein LOC111432412 [Cucurbita moschata][more]
KAG7021764.15.2e-5273.05hypothetical protein SDJN02_15491 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023530961.16.8e-5273.05uncharacterized protein LOC111793348 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KQ701.9e-5272.62uncharacterized protein LOC111496608 OS=Cucurbita maxima OX=3661 GN=LOC111496608... [more]
A0A6J1EB502.5e-5273.05uncharacterized protein LOC111432412 OS=Cucurbita moschata OX=3662 GN=LOC1114324... [more]
A0A6J1H9V92.7e-4668.67uncharacterized protein LOC111461455 OS=Cucurbita moschata OX=3662 GN=LOC1114614... [more]
A0A6J1JB795.1e-4567.07uncharacterized protein LOC111485208 OS=Cucurbita maxima OX=3661 GN=LOC111485208... [more]
A0A6J1BYC02.9e-3254.88uncharacterized protein LOC111006850 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..58
NoneNo IPR availablePANTHERPTHR31923BSD DOMAIN-CONTAINING PROTEINcoord: 5..164
NoneNo IPR availablePANTHERPTHR31923:SF9BSD DOMAIN-CONTAINING PROTEINcoord: 5..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021801.1Spg021801.1mRNA