Spg021661 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021661
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionABC transporter B family member 26, chloroplastic
Locationscaffold2: 17473222 .. 17478735 (-)
RNA-Seq ExpressionSpg021661
SyntenySpg021661
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATGGATTTGGCTCGGGCATTCAACGGATTGGACGACGACGAGTCAGGGCGAGTCATCGTGCTCTCTGGTTTAGGTCGAGCATTATGTTCCTATGTAAACCTTAATGCAACGGAGGACGTCTTCAAGGGAGATGCGAAGGATGTTGAATCCCATCCGGTTGTGCAAATGGAACGCTGCCGGAAGCCGATCATCAGAGCGATTGCAGGTTTGCCATCACCGCTGGGTTTTAGCGATTGCAGGTTTTCATTTTACTAAGTTCACCCATTTTTTTGTGCGCTCGGGCTATTCTTATTATTTGCTAGCGTTATGGCAATTGCGATTTAGAATCAAGAATGTGTGATTTTCTGAAATCTATTGGCAATGATGTTCTAGTGAAATTTCTAATTTCAGGACAAATCTATGGCAGATTTAGGATATTTCCTTCATGGGTATTATCTCAGAAACTCCAAAGGATCATCAGAGTTAATAAAGCTCCTGAAGTATCCCTAACGACCTTTTTCACCGCTCTTCGAAGATTGAACAAGCCCTAGTGAATTTTTAGTCACAAATTCGGTGCAATGGGACAGATCTAGTACTCCGAGAAGTATTTCAATGATACCTATGAGTACAGGTCTATGGTTTCTCATCGTCATCTGTTTTTCGATTCAAGATTTTTGTTTCTCTGGCTTTTTCCATTGCGGTTGGTTGATTTTCATGGTTTTTTGTTTTCGTCTGTTATATAGGCATGTGGTGTTTCCTCCTGAAGTAGCGAAACTTCTTCCTAAGAATCGCCTTCTTTCTGAAGTAAGTAATACTTCATGATTCTCCTGTATATTAAAATTTCTTGTGTGGAATCCTGTTCCGGTGATTGGTAATGAAATTTAAATGGATACTCATGATTCTTGTGTATCAGAATTTCTTGTACAAAATCTCGTTCTGCTAATCGGATATGAAATAAAATTGAAAGAGAGATATCTAATACTGAGAGCCCTAGCGATTTCTCAATTCAAGAACATTCCAAAACTTGGAATCATAGATTGTGGTGCATAATCATCAGGTGCATTTCCTCTAATTGATTTTGATTGTGATACAATGTGAATAGTTAGAATTCTGTGTAATTTGATTGCGTGGTGATGGTCAGAATGAATGGCGAGCGATTGGGGTTCAGTAGAGTCGAGGATGGGTGTATTATGCAATTCATCGCCTAGAGCCGCACATCATGTTGCTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCACAGTAGATTCTGGCTAATTGATAGGTTTATTATCTTTTCTATATAGGTACACTATATTTTGTCTAGAACACTAATGAAATATATTAAAAAAAAATCAGGTGTTTGTGGCTTGTTGTGTAGTGTAGTTGCTTCTCCAATTCGGAGAAGCTCTGTGGCCCAATCATAAGCCCACATTGTTGATGAATTTGTGGATCTAAATTGCTTTGGTGAATCATGGGGTTGAAGGAGGTGAATTGTTGAAGAAAAAAAATATTTACTATTATGTTTTCGCAAAAATGATAATTAAAAAAAAGTGTTCCTTTCGGAGGATGAAATTGTTTTAAAGCACTAATTTGTTCTCTTACTTTCTCTTTTTGCCCATGTGTTAGGCTATTTGAATACTGGTTAGTACCAGAACTTTTTGCAATAAACCTTCACATGAGAAGTTGCTGCAATTTCATTGTTATGTTTTAGTTGTTATTATAAGTTTTTTAGCATTTTGTCAGATTTATAGTCCCAAAGAAATTGTATTTAGGAAGGGGCTAGCTTGAAAATCGGAATAAGAATTTAGGATGAGGAAAATGTTTGCAGTAAAAGTTCATGAAAAGTTCTTAGAGATTTCTTAGAAAACTGGAAATTAGTTACTCTTACTCGTTTATTCTTTGGGAAGCTTGAAAATAGGAACCTAAGAAACAAGAATGCTGCTTGAAAAGGGCTATAGCCTGAGGAAAGTGAGGAGAGTGCTTTTTGACAGAAATTGAGAGTGCTTTTTGACAGAAATTGAGAGTGCTTTTTGACAGAAATTGATAAAGACTCTTTTTGACAGAAATTGAGAAAAGCTGGAGACAGTCTTTGTTTAAGGCAAGATGCAGAAGATGTTTGCTGGAAGTTTGAAGAGTCAATATCAAACTTACAACTCATATCAATGTAAGCCAGATAGAAACATCTTTTATGTTTCAAGTTTTGGAATCATTTTCTTTATGAATTTTGCTACTTTAAGATTACCAAAGGAGTGGGATGGATCCAATACAAGAGACGACTTGTGAATTCTCAATTGTGAATGAGAAACTCTTTTTGGCCACTTTAAGGTCAGGAGGTTGTACATAATTTTTAGAGGTAAAAAACATGAATTTAAAGAAAGAAAACAAAGAAATGCTTGTAGACAGAAAATAATATGGATAAAAATGCAATGTTGTGTTGTGTATAGATAAAATCCTCTGAATATGGTCGAGATTGAATTGGACTCCAATTCATAATTGTATATCTTTTTGTGTTGGCTTAAGAAAATAATAGGTCATTTGAGATAATGGTTGAATGAATTTATCATTGAACTGAGGAAGGTGAACACTCCCTAAACTCTTCTCTTATATTTACAATAAAGTTTTATTTGTTTTGTTAATTGTATACTTAGATGTTTTTAATTATTCTAATAATTTAGATTTAACTATGGTGTTTATTGTTAAGTCAAGATGTACACACAATACTATCTTTTTTTTTAAAGAGAAAAAATTCTTGTTATGTTACATTTCCATTGAAGTTAGACTAAAATACAACAAAAATTCTCACGTGTGGGAATTTAGCAAATTGAACATTCTTGCCGCAACCCAACAAAACTCAAACTAAGTGTCATTTGGCCGACCTAAAATAGAATGGTGTTATATGTTGTTGGATTAGATTTCTTTTTAACTGAGGAACTTGATTTCGTGTTTAGATTATAAGCTTGATGGACATTGGTGCTCGTATCTAACTTGTCTATGATTAAAGTTTTCTATGTGTGTTTAATTGTCATTTTAATAGCAGTCAATCTTTTTTTTATTGTTTTTGTTGGATATAATTATGCTTAGGAGTGAATTAGACTAAGAACCTTAAATGCGAGGATGTTCATATTGTTCACGTGAACTCTTAGACACCTAATAGTAAGAAGCTGTGATATGTAACCTTTGTTAAACATTAATTTTTGAAGTTTAACAAATCTTTGAAAATGTTTTCTTATGAGATTTATTTCAACTCCTTTTTAAAGATTAAGTTTATCAATTTTTACTTTTGGAAAATAATGACTATGCAACTTTTTTCTTCACTCAGTTATATACTTTGATTACATTGTAAGGTTTAGTTCACTGTCAAAGGTGAAGCACTTGGTTACTCAACTAAAATTGCATCAAGATATGTAAACATAAATTGAACTAAAGTTATCTTTGAAAGATATTGCTTGATATTGGATTTGATATCTTATGTAATTGTTTTATGTGGCTTTTTTTGTTGTTATTGTGGTCAATAGGGAGATACCCTGTTCTTCCATTTGGAATCAGATGTAATGAGAAGATTGCTTGCTATCTCACCCTTAGAGGTGAGATGGTGATGCAAATTTTGGAATGTGGGTTGAAGGTTAAGGAGTACGAGTTGCATCACAGGAACTTCAGTGACATTGGATGCTTTGGCTTGGTATTCAGGAGCACATCGATTTTGGAATCTAAGTAAGCCTTTGTACTTCTGAATATCCTTCAAGTTATGCTCCAAAAATTTGTATGAAAATCACTAAAATAGAGTGTGATTACCTCCTTTCACTAAGAGCATGTTTGAGGTACACTTTTTGAAATAGTTTTATATTTTGGTTTGAATAACTAGTGTTTAAGAGCTATAATTGGAGGGCTTGTAAAAGTTTAGATTATTGCTTCATCAGGAAAAAAAAGGTTTAGATTATTGTGAGTTTGAAGTCACTATTTGCAAGCCAAATTTTTCTTAAGAACGTCTTTGGGTTGTTCTATAAAACAAGTCATCCATAAAAACAAACTGAAATTGTGTTAGACAAATAGAAAATTGTTGTTTAAAAAGGCTCTCAAATATCTCTAACTGTTTTCTAAACAATTGTTTTAATCTTTTGAAATAAAAATTCAATAAAGTCATATTTGAATTAATGTTTTCGGTGATTCCTTTTTCTTAATAATAACCTTTAAAACATCATTCAATCTTAATTCTTCAAGTGGTTTTGTTATTTTCCCATCAAAAAGACGTTTTGAAAACAAAGTCAATAAATTGTGTAAAAAATTTTCCAAACAAGCCTTGAACATCATCCACATATATTGCTTGAGGTAGATGTGTTTCAAACTTCTAACATGCTTCCTCCCTCCCCTTCCCTTCCGAATTTCTTGAAGAACCATACAAAAGTATCCAAGCTATTGCAAAAAGCTTAATTGGTTCGCTTATACCTGTGAAGGTAAATAACTTCTACAATTGCCCATAATTTTATTCATTTATAGTTTTGCAAAAAGTTTGTTTTGAGCTTCATAACTAAATTTTTATGAAATATGTTTATGTATATTTATAGGCTTCATAACTAAACTCTTGTGTATCTTTCTTTGTTACTCGAAGGCTCAATTAGTGAAGATCAAAATCAACTCTCTTTGGTCGATGTTATCTTGACGGCTTTGAGGAGATTCTAAGCTCTGTTTCACGTGTCAAGTGAGAAGTTTGCTCTGTTTTTGGTGGTTGGGTTTTAATCTTGGCTTTTTCTAGTTCAATGTGTTTTGTTGGGTAGTTGTTTTATTAGCTTAAGTTTGAGATTTTTGGTTAGGGAGTTTCTAAGTGGTTGTTTTTGCCATTGAATGGAGCTCATGGTGAGACTTGAACCTTGGCCTTTTATCCTTTATGAAATTTGGGTAAATGTATGAGTTTTCTTTGGTTAGAAAGCATGCTAATGGTTGTGTTCTGAATCCATCTTATGCGGGTAAAAAATTATTATTTTCTTTACCTCTCTTCAAACATGGTATGGTGTGACTTTCTTCAATGACTGGAGGTCTCTCATAAACTGCATGTCAAGAGAATAAGAGAAACACTTTATTTTGCACTTCTCCTACAGGTTCTGAATAATAAGAAGCCAACTTCTATAACTTTATTTTCTTACTGGTGCAATTCATCAAGTTGCTTCAAATCTCTCTCTTTCAATATAATTTATTTGGGAATACTTTTGCTTGTAGGATATATCATTTTTTGACAGTGAAACTGTTGGTGACCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCCAGGTTTTCTTTTGTGAACCAATAACTGATGCCTTGCAAAGTTACTAATTCTTAATCTTAAACTTCTCTTTTTCCCAGGGGGGTGGTGCTTTGATCTATTTGCTTCTTTTGTCAAAGCCTCTTGGTTTATGCACACTGATGATATGCTTCACTTTAGGAGTTATTATGCTATTGTATGGCCGGTAA

mRNA sequence

ATGAGTGGGATGGATCCAATACAAGAGACGACTTGTGAATTCTCAATTGTGAATGAGAAACTCTTTTTGGCCACTTTAAGGTCAGGAGGGAGATACCCTGTTCTTCCATTTGGAATCAGATGTAATGAGAAGATTGCTTGCTATCTCACCCTTAGAGGTGAGATGGTGATGCAAATTTTGGAATGTGGGTTGAAGGTTAAGGAGTACGAGTTGCATCACAGGAACTTCAGTGACATTGGATGCTTTGGCTTGGTATTCAGGAGCACATCGATTTTGGAATCTAATGAAACTGTTGGTGACCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCCAGGGGGGTGGTGCTTTGATCTATTTGCTTCTTTTGTCAAAGCCTCTTGGTTTATGCACACTGATGATATGCTTCACTTTAGGAGTTATTATGCTATTGTATGGCCGGTAA

Coding sequence (CDS)

ATGAGTGGGATGGATCCAATACAAGAGACGACTTGTGAATTCTCAATTGTGAATGAGAAACTCTTTTTGGCCACTTTAAGGTCAGGAGGGAGATACCCTGTTCTTCCATTTGGAATCAGATGTAATGAGAAGATTGCTTGCTATCTCACCCTTAGAGGTGAGATGGTGATGCAAATTTTGGAATGTGGGTTGAAGGTTAAGGAGTACGAGTTGCATCACAGGAACTTCAGTGACATTGGATGCTTTGGCTTGGTATTCAGGAGCACATCGATTTTGGAATCTAATGAAACTGTTGGTGACCTTACAAGTAGGCTTGGAGCTGATTGCCAGCAAGTGTCGAGAGTCATTGGAAATGATCTTAATTTGATATTACGCAACATTCTCCAGGGGGGTGGTGCTTTGATCTATTTGCTTCTTTTGTCAAAGCCTCTTGGTTTATGCACACTGATGATATGCTTCACTTTAGGAGTTATTATGCTATTGTATGGCCGGTAA

Protein sequence

MSGMDPIQETTCEFSIVNEKLFLATLRSGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFGLVFRSTSILESNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICFTLGVIMLLYGR
Homology
[Close]
BLAST of Spg021661 vs. NCBI nr
Match: XP_008446165.1 (PREDICTED: ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-26
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 95  NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICFT 154
           NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMIC T
Sbjct: 230 NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICST 289

Query: 155 LGVIMLLYGR 165
           LG IML+YGR
Sbjct: 290 LGAIMLVYGR 299

[Close]
BLAST of Spg021661 vs. NCBI nr
Match: XP_022945847.1 (ABC transporter B family member 26, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-26
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 84  LVFRSTSILESNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKP 143
           L+ +  S  +S ETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLL+LSKP
Sbjct: 220 LLLQDISFFDS-ETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLILSKP 279

Query: 144 LGLCTLMICFTLGVIMLLYGR 165
           LGLCTL+ICFTLG IML+YGR
Sbjct: 280 LGLCTLIICFTLGAIMLVYGR 299

[Close]
BLAST of Spg021661 vs. NCBI nr
Match: XP_008446166.1 (PREDICTED: ABC transporter B family member 26, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-26
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 95  NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICFT 154
           NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMIC T
Sbjct: 42  NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICST 101

Query: 155 LGVIMLLYGR 165
           LG IML+YGR
Sbjct: 102 LGAIMLVYGR 111

[Close]
BLAST of Spg021661 vs. NCBI nr
Match: XP_022945848.1 (ABC transporter B family member 26, chloroplastic isoform X2 [Cucurbita moschata])

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-26
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 84  LVFRSTSILESNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKP 143
           L+ +  S  +S ETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLL+LSKP
Sbjct: 38  LLLQDISFFDS-ETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLILSKP 97

Query: 144 LGLCTLMICFTLGVIMLLYGR 165
           LGLCTL+ICFTLG IML+YGR
Sbjct: 98  LGLCTLIICFTLGAIMLVYGR 117

[Close]
BLAST of Spg021661 vs. NCBI nr
Match: XP_004135488.1 (ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis sativus] >KGN51761.1 hypothetical protein Csa_007938 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-26
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 95  NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICFT 154
           NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMIC T
Sbjct: 230 NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICST 289

Query: 155 LGVIMLLYGR 165
           LG IML+YGR
Sbjct: 290 LGAIMLVYGR 299

[Close]
BLAST of Spg021661 vs. ExPASy Swiss-Prot
Match: Q8RY46 (ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCB26 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.7e-23
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0 

Query: 84  LVFRSTSILESNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKP 143
           L+F+  S  +S +TVGDLTSRLG+DCQQVSRVIGNDLN+I RN+LQG GALIYLL+LS P
Sbjct: 219 LLFQDISFFDS-QTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWP 278

Query: 144 LGLCTLMICFTLGVIMLLYG 164
           LGLCTL+IC  L  +M +YG
Sbjct: 279 LGLCTLVICCILAAVMFVYG 297

[Close]
BLAST of Spg021661 vs. ExPASy Swiss-Prot
Match: P42795 (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg021661 vs. ExPASy Swiss-Prot
Match: P42794 (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg021661 vs. ExPASy Swiss-Prot
Match: P46287 (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-16
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RG+  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg021661 vs. ExPASy Swiss-Prot
Match: A2YDY2 (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-16
Identity = 40/56 (71.43%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFS+ GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFG 105

[Close]
BLAST of Spg021661 vs. ExPASy TrEMBL
Match: A0A5A7SWM5 (ABC transporter B family member 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001400 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 95  NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICFT 154
           NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMIC T
Sbjct: 230 NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICST 289

Query: 155 LGVIMLLYGR 165
           LG IML+YGR
Sbjct: 290 LGAIMLVYGR 299

[Close]
BLAST of Spg021661 vs. ExPASy TrEMBL
Match: A0A0A0KVH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598690 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 95  NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICFT 154
           NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMIC T
Sbjct: 230 NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICST 289

Query: 155 LGVIMLLYGR 165
           LG IML+YGR
Sbjct: 290 LGAIMLVYGR 299

[Close]
BLAST of Spg021661 vs. ExPASy TrEMBL
Match: A0A6J1G219 (ABC transporter B family member 26, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449968 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 84  LVFRSTSILESNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKP 143
           L+ +  S  +S ETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLL+LSKP
Sbjct: 220 LLLQDISFFDS-ETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLILSKP 279

Query: 144 LGLCTLMICFTLGVIMLLYGR 165
           LGLCTL+ICFTLG IML+YGR
Sbjct: 280 LGLCTLIICFTLGAIMLVYGR 299

[Close]
BLAST of Spg021661 vs. ExPASy TrEMBL
Match: A0A6J1G250 (ABC transporter B family member 26, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449968 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 68/81 (83.95%), Postives = 74/81 (91.36%), Query Frame = 0 

Query: 84  LVFRSTSILESNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKP 143
           L+ +  S  +S ETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLL+LSKP
Sbjct: 38  LLLQDISFFDS-ETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLILSKP 97

Query: 144 LGLCTLMICFTLGVIMLLYGR 165
           LGLCTL+ICFTLG IML+YGR
Sbjct: 98  LGLCTLIICFTLGAIMLVYGR 117

[Close]
BLAST of Spg021661 vs. ExPASy TrEMBL
Match: A0A1S3BEE3 (ABC transporter B family member 26, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488972 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.4e-26
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 0 

Query: 95  NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICFT 154
           NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMIC T
Sbjct: 42  NETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKPLGLCTLMICST 101

Query: 155 LGVIMLLYGR 165
           LG IML+YGR
Sbjct: 102 LGAIMLVYGR 111

[Close]
BLAST of Spg021661 vs. TAIR 10
Match: AT1G70610.1 (transporter associated with antigen processing protein 1 )

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-24
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 0 

Query: 84  LVFRSTSILESNETVGDLTSRLGADCQQVSRVIGNDLNLILRNILQGGGALIYLLLLSKP 143
           L+F+  S  +S +TVGDLTSRLG+DCQQVSRVIGNDLN+I RN+LQG GALIYLL+LS P
Sbjct: 219 LLFQDISFFDS-QTVGDLTSRLGSDCQQVSRVIGNDLNMIFRNVLQGTGALIYLLILSWP 278

Query: 144 LGLCTLMICFTLGVIMLLYG 164
           LGLCTL+IC  L  +M +YG
Sbjct: 279 LGLCTLVICCILAAVMFVYG 297

[Close]
BLAST of Spg021661 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 87.8 bits (216), Expect = 8.7e-18
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg021661 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 87.8 bits (216), Expect = 8.7e-18
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg021661 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 87.8 bits (216), Expect = 8.7e-18
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28  SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
           S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 50  SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 105

[Close]
BLAST of Spg021661 vs. TAIR 10
Match: AT5G45775.1 (Ribosomal L5P family protein )

HSP 1 Score: 87.8 bits (216), Expect = 8.7e-18
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 28 SGGRYPVLPFGIRCNEKIACYLTLRGEMVMQILECGLKVKEYELHHRNFSDIGCFG 84
          S  RY V  FGIR NEKIACY+T+RGE  MQ+LE GLKVKEYEL  RNFSD GCFG
Sbjct: 40 SKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFG 95

The following BLAST results are available for this feature:
BLAST of Spg021661 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446165.12.8e-2695.71PREDICTED: ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis... [more]
XP_022945847.12.8e-2683.95ABC transporter B family member 26, chloroplastic isoform X1 [Cucurbita moschata... [more]
XP_008446166.12.8e-2695.71PREDICTED: ABC transporter B family member 26, chloroplastic isoform X2 [Cucumis... [more]
XP_022945848.12.8e-2683.95ABC transporter B family member 26, chloroplastic isoform X2 [Cucurbita moschata... [more]
XP_004135488.12.8e-2695.71ABC transporter B family member 26, chloroplastic isoform X1 [Cucumis sativus] >... [more]
BLAST of Spg021661 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RY466.7e-2370.00ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana OX=370... [more]
P427951.2e-1673.2160S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2[more]
P427941.2e-1673.2160S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2[more]
P462872.7e-1671.4360S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1[more]
A2YDY23.6e-1671.4360S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S... [more]
BLAST of Spg021661 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SWM51.4e-2695.71ABC transporter B family member 26 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A0A0KVH91.4e-2695.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598690 PE=4 SV=1[more]
A0A6J1G2191.4e-2683.95ABC transporter B family member 26, chloroplastic isoform X1 OS=Cucurbita moscha... [more]
A0A6J1G2501.4e-2683.95ABC transporter B family member 26, chloroplastic isoform X2 OS=Cucurbita moscha... [more]
A0A1S3BEE31.4e-2695.71ABC transporter B family member 26, chloroplastic isoform X2 OS=Cucumis melo OX=... [more]
BLAST of Spg021661 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G70610.14.8e-2470.00transporter associated with antigen processing protein 1 [more]
AT2G42740.18.7e-1873.21ribosomal protein large subunit 16A [more]
AT3G58700.18.7e-1873.21Ribosomal L5P family protein [more]
AT4G18730.18.7e-1873.21ribosomal protein L16B [more]
AT5G45775.18.7e-1873.21Ribosomal L5P family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011527ABC transporter type 1, transmembrane domainPFAMPF00664ABC_membranecoord: 94..164
e-value: 4.5E-8
score: 33.1
IPR011527ABC transporter type 1, transmembrane domainPROSITEPS50929ABC_TM1Fcoord: 94..164
score: 13.28318
IPR022803Ribosomal protein L5 domain superfamilyGENE3D3.30.1440.10coord: 19..115
e-value: 3.3E-12
score: 48.3
IPR022803Ribosomal protein L5 domain superfamilySUPERFAMILY55282RL5-likecoord: 30..92
NoneNo IPR availablePANTHERPTHR24222ABC TRANSPORTER B FAMILYcoord: 84..164
NoneNo IPR availablePANTHERPTHR24222:SF64ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTICcoord: 84..164
IPR036640ABC transporter type 1, transmembrane domain superfamilySUPERFAMILY90123ABC transporter transmembrane regioncoord: 95..164

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021661.1Spg021661.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0140359 ABC-type transporter activity
molecular_function GO:0005524 ATP binding