Spg021645 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021645
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionACT11D09.5
Locationscaffold2: 16620086 .. 16623369 (+)
RNA-Seq ExpressionSpg021645
SyntenySpg021645
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCGTTTCATTTTCATTTTCCCCCATTTTCAATCTGCGTCGCCTGGACTGCTTAGTACAGGTAAACGCAAACTACAAGCGACTCGGAGCTTTCTCCGCGACAATTTCACAAAACCTTCCGCGATCAATGATGGGTCATCATCGTCGATCTTCTTCTGTCGTTGCTAATATCCTTACCTTCTCTGGGAGATTCTCAATTCCAATGCGATTGCAGCTATTCTGTATTATTTTGCTGGTAATGTTTTATTACAGTTTGTTTGTTTTCTGTTTTCAATACATTGGGGAATTTTTGGTCGATAATTTCGTTTGTCATCGACTTTGTTCGAGATTCGCTTACGATTGTTTTTTTTTTTTGGTATTTATTGCTTTGATTCTGGTTTTTTAAGCTACTTTGTTCATGAAGTTAAATAAACCTATTATTGGAGTTGAGATTAGTGAAGTAAATAAAAGGATGATATACCCGAATTTGACATTAGTAATGATATAAAAGAAAATGATAAAACATACCGCAATTTATTGAATTGCTCTATGAGAACCACGATTGCAATGTAAATTAACAGAATATACGAAAATAGTACTGACAAATTCCGAGCATTTCGAGACAGCAGGCTTTCGTCAAAGATGGAGAAAAATGCTTTCATCAAAGGAACGTAGATTCTTGGTTTGACGTTAGTTTCAAAATGAAGCTGTACAGAATTACAAAAGATGGAGAAAGAAGGGGCGAGTATTTGAACTTGATTTTGAAATAGCCCATGATAGGATTGATTGGGATTTGTTGTTTGCACTGCAGTGCTTGAAAAGAAGGGTTTTGGGTCTAGGTGATTTAAGTGGACGAGAGGTTGTATTCAAGATACCAAATTTCATGTTTTTCTTAATGGGAAGTCAAGAGGGAGAACTAATGCTTCAAGGGGATTAAGACAAGACACTTTTCTCACTGTTTCTTGTTGGTAAGCTAGAGGAAAGACAGAAGGTTCATGTCTCACATTTGCAATTTGCTGATGACCTTGTGTTGTTTTGTAAAGATGTGGAGGTTTATATGGAGAATTTATTTAAAACAATCATAGCTTTCTAAGGTGCTTCTGACTTAAAAGTTAATTGTAAGTAAAATCAATGGCAAGTGAAATCAATATTTGAGGCCAAAAGCTGAATCTAATGGCTCATCTGCAGGATTATAAGAAGCCAAATCTACCTATACTGTATTATGGATAACCCCTTGGACGCAATCTTAAAGTTTGAATTTTGGTTACCAATCGTGGAAAAGTTAGGTAAAGATTGATAAGTTTGAAGAACTTCATGCTTTCAAAAGGTGCGAGATTAATACTGTGTGATTCAGTACTTTCTAGTACCCCCCTACGTTATGTCTCTTTTTATGATGCTAAGAAGGGTAGTAGAAATTGAGAGAAAAATGATGGAGTTCTATTAGATAGGCAGTGGGGTAGAGAGGTGAAATATTTAGTATATTGATTAAGTCTTTACCAATGGAGTGTGGGGGGTTGGGATTGGGTAACCTTAGAGAAAAAAGATGAAGGTTCTTTTGGCTAAATGGTGTTGGAGTTATGTCAAGGAACCTGGGGAGTTTTGATGTAGAGTTGTGTCAAGTATTTAGGTTCAAGATTCTGGATGGCTTACTAAAAAATGCCGGGTTCATAGAAGCTTAAGGTGGGTTATTTTAAAATTTTGGGATGCTGTTGGAATTTATTATTTTTTTAAAAATTTATTTATTTATTATTATTATTATGATTATCCAATTAGGATTGGGAAGGGCAGGAGGACTATCCTTTTGGTAATATATTTGGTGGCAGGAGGATTATCTTATTGGGGTTTTTTTTGACAAGAAAAACTTTTCATTGAAGATATGAAAGGGAATAATTGTTCAGGAAACACACTACTGAGGGAGGGGAAAAAAAGAAGGCAAAGCAAAGTAATAGCAAGCACGACAAGGAGCAATATAACCAGGCTACAAAAGAATATAAAAACCTATAATCACCAACAAAAGAATCCAAAGGCATCTACAACAAGATTAGGGACATCAAAATACTCCAGTAACCATCTCAGAAAGCTGATTATTTTTATTGGGATTCTAATTCTAGGTTGTGGAAAATTATGCCAAGAAGAAATCTAGTGGAGAGTTTGTTTGCAGAGCCGTGTGAAGGTAGAAGAATCTAGAAATTAGATCCTGCAGACGAGTTTTTAGTTAAAAAATATTTGGTAAGAGCAAAGTTTCATCAAGATAAAAGCAACAAATCTTGGTTTAGGTCCTGTTGGAAGACCAAGAGCGCTAAAATAGTTAATAATTTTATTTAGTTGGTTCAGTTGGGTAAGCTGAAACGGTAGACAAAATACTAAATTCCATCAAAATGCTCTGTATTGATTTTGAGCAGGGGTGACACCACCCTGTTCTGGACAGACAAATGGATAGAAAATGAGGCGCTAAAAGGCATTTACCCATCCATCTTTGAGATCTCTTCAAAGAAGGAAGCATCCATAGCAGATTTTTGGATCTCTTCACCGACAGCTGGCCCAGAAGGAACTTGATAGAGACTGAAATAGATGAATGAGCTCGGTTATAAGTGGTTTTATCCCATACTGCCCTCCGAAAATTAGGATACTTGGGTTGAAACTTAGAGAAGGACTGGGTCTACTTAAAAATCCCTTGCTAATCACTGTCATCAACATGTATACAAGGTATTGGTAATTTATGAGCCTATAATGATGATGAAACCCTTGGTGGAGGGGGGTTTGGGTATTGGTAATTTAAGAGCTCGTAATAGTGCTATTTTGGCTAAATGATTGTAGCGTTTCCATCTTGAGTCTAACTCCCTTTGGTACATGGTAATTGTCAGTAAATATGGTCCTTTCCCCTTGGAGTGGATTGGTAGGCAAGCTAAAGGCATTTCTAGACTACCTTGGAAAGGTATAGTTGAGGGGTTTCCTTGTTTTTTCTCAGTATGTTAGGCGTGTGGTGGGGGATGGGAGTGATATTACTTTTTTAGGAGGATAGGTGGGTGGGGGAGAGTCTTCTATGCTCTCGTTTCCTGTATGTTTTGTCTTCAATGAAAAATCATTTAGTTGTTGATGTTTTGCAAACCCTGTCTTCTTCTCCCGTTTTACGGTTTCGTCGTGCGTTGTCCGATAGAGAAACGGTGGATGTCATTGACCTCCTTTCTTTGGTGGGGGAATTTTGTTGCAATCCTGGGAGAAGGGATGTTCGTCTTTGGAGGCCTTCTCCCTTTGATGGCTTTTCTTGTAAATCTTTCTTTCTTTGCCTAGTCAACCCCGAGTGA

mRNA sequence

ATGATGGGTCATCATCGTCGATCTTCTTCTGTCGTTGCTAATATCCTTACCTTCTCTGGGAGATTCTCAATTCCAATGCGATTGCAGCTATTCTGTATTATTTTGCTGTGCTTGAAAAGAAGGGTTTTGGGTCTAGGTGATTTAAGTGGACGAGAGCTAGAGGAAAGACAGAAGGTTCATGTCTCACATTTGCAATTTGCTGATGACCTTGTGTTGTTTTGTAAAGATGTGGAGGTTGTGGAAAATTATGCCAAGAAGAAATCTAGTGGAGAGTTTGTTTGCAGAGCCGTTAAATATGGTCCTTTCCCCTTGGAGTGGATTGGTAGGCAAGCTAAAGGCATTTCTAGACTACCTTGGAAAGTTGTTGATGTTTTGCAAACCCTGTCTTCTTCTCCCGTTTTACGGTTTCGTCGTGCGTTGTCCGATAGAGAAACGGTGGATGTCATTGACCTCCTTTCTTTGGTGGGGGAATTTTGTTGCAATCCTGGGAGAAGGGATGTTCGTCTTTGGAGGCCTTCTCCCTTTGATGGCTTTTCTTGTAAATCTTTCTTTCTTTGCCTAGTCAACCCCGAGTGA

Coding sequence (CDS)

ATGATGGGTCATCATCGTCGATCTTCTTCTGTCGTTGCTAATATCCTTACCTTCTCTGGGAGATTCTCAATTCCAATGCGATTGCAGCTATTCTGTATTATTTTGCTGTGCTTGAAAAGAAGGGTTTTGGGTCTAGGTGATTTAAGTGGACGAGAGCTAGAGGAAAGACAGAAGGTTCATGTCTCACATTTGCAATTTGCTGATGACCTTGTGTTGTTTTGTAAAGATGTGGAGGTTGTGGAAAATTATGCCAAGAAGAAATCTAGTGGAGAGTTTGTTTGCAGAGCCGTTAAATATGGTCCTTTCCCCTTGGAGTGGATTGGTAGGCAAGCTAAAGGCATTTCTAGACTACCTTGGAAAGTTGTTGATGTTTTGCAAACCCTGTCTTCTTCTCCCGTTTTACGGTTTCGTCGTGCGTTGTCCGATAGAGAAACGGTGGATGTCATTGACCTCCTTTCTTTGGTGGGGGAATTTTGTTGCAATCCTGGGAGAAGGGATGTTCGTCTTTGGAGGCCTTCTCCCTTTGATGGCTTTTCTTGTAAATCTTTCTTTCTTTGCCTAGTCAACCCCGAGTGA

Protein sequence

MMGHHRRSSSVVANILTFSGRFSIPMRLQLFCIILLCLKRRVLGLGDLSGRELEERQKVHVSHLQFADDLVLFCKDVEVVENYAKKKSSGEFVCRAVKYGPFPLEWIGRQAKGISRLPWKVVDVLQTLSSSPVLRFRRALSDRETVDVIDLLSLVGEFCCNPGRRDVRLWRPSPFDGFSCKSFFLCLVNPE
Homology
[Close]
BLAST of Spg021645 vs. NCBI nr
Match: TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-09
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 136 FRRALSDRETVDVIDLLSLVGEFCCNPGRRDVRLWRPSPFDGFSCKSFFLCLVN 190
           FRRALSDRET +V+ L+SL+       GRRDV +W P P +GF CKSFF CLVN
Sbjct: 175 FRRALSDRETSNVVALISLLESHSFRLGRRDVTVWSPFPLEGFLCKSFFQCLVN 228

[Close]
BLAST of Spg021645 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-07
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 120 KVVDVLQTLS-----SSPVLRFRRALSDRETVDVIDLLSLVGEFCCNPGRRDVRLWRPSP 179
           K++ V + L+     SS  L   R+L+D E++++  LL L+    C+ GR DVR+W P+P
Sbjct: 335 KLLSVAEVLNFGEEDSSISLGLSRSLTDPESLEIAALLDLLPSVSCSSGREDVRVWIPNP 394

Query: 180 FDGFSCKSFFLCLVNP 191
             GFSC SFF  L++P
Sbjct: 395 LGGFSCSSFFQVLISP 410

[Close]
BLAST of Spg021645 vs. NCBI nr
Match: XP_022157070.1 (uncharacterized protein LOC111023880 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-06
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MMGHHRRSSSVVANILTFSGRFSIPMRLQLFCIILLCLKRR 42
          MMG+HRRSS+V AN+ +FSGRFSIPMRLQL CIILL L  R
Sbjct: 1  MMGYHRRSSTVTANLCSFSGRFSIPMRLQLLCIILLLLAAR 41

[Close]
BLAST of Spg021645 vs. NCBI nr
Match: TYK06495.1 (ACT11D09.5 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 8.4e-06
Identity = 37/92 (40.22%), Postives = 44/92 (47.83%), Query Frame = 0 

Query: 98  KYGPFPLEWIGRQAKGISRLPWKVVDVLQTLSSSPVLRFRRALSDRETVDVIDLLSLV-- 157
           K+G  P EWI R  KG  R PWK + +     S  VL      +DR      DL S +  
Sbjct: 155 KHGSHPFEWITRGVKGTFRNPWKDISIELPTFSRFVLVAWGMGNDR-----CDLSSFLTQ 214

Query: 158 GEFCCNPGRRDVRLWRPSPFDGFSCKSFFLCL 188
           G F    GRRD  +W P+P  GFSC S F  L
Sbjct: 215 GGFTVRVGRRDAHVWIPNPSRGFSCDSLFWLL 241

[Close]
BLAST of Spg021645 vs. NCBI nr
Match: TYK19487.1 (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 0 

Query: 86  KKSSGEFVCRAVKYGPFPLEWIGRQAKGISRLPWKVVDVLQTLSSSPVLRFRRALSDRET 145
           K  SG FV R + Y  F L  +G  A       W+++   +  S   +     AL  RET
Sbjct: 158 KHGSGPFVGR-ISYLRFLLSLLGLGA------GWQMI---RKRSFGKINGLGLALFVRET 217

Query: 146 VDVIDLLSLVGEFCCNPGRRDVRLWRPSPFDGFSCKSFFLCL 188
            ++  LLS +GE     G RDV +W+P+P +GF CKS F  L
Sbjct: 218 TEMASLLSFLGECDFREGGRDVPVWKPNPLEGFVCKSLFRLL 249

[Close]
BLAST of Spg021645 vs. ExPASy TrEMBL
Match: A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.1e-10
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0 

Query: 136 FRRALSDRETVDVIDLLSLVGEFCCNPGRRDVRLWRPSPFDGFSCKSFFLCLVN 190
           FRRALSDRET +V+ L+SL+       GRRDV +W P P +GF CKSFF CLVN
Sbjct: 175 FRRALSDRETSNVVALISLLESHSFRLGRRDVTVWSPFPLEGFLCKSFFQCLVN 228

[Close]
BLAST of Spg021645 vs. ExPASy TrEMBL
Match: A0A6J1DFI2 (uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019624 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-07
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 0 

Query: 120 KVVDVLQTLS-----SSPVLRFRRALSDRETVDVIDLLSLVGEFCCNPGRRDVRLWRPSP 179
           K++ V + L+     SS  L   R+L+D E++++  LL L+    C+ GR DVR+W P+P
Sbjct: 335 KLLSVAEVLNFGEEDSSISLGLSRSLTDPESLEIAALLDLLPSVSCSSGREDVRVWIPNP 394

Query: 180 FDGFSCKSFFLCLVNP 191
             GFSC SFF  L++P
Sbjct: 395 LGGFSCSSFFQVLISP 410

[Close]
BLAST of Spg021645 vs. ExPASy TrEMBL
Match: A0A6J1DS42 (uncharacterized protein LOC111023880 OS=Momordica charantia OX=3673 GN=LOC111023880 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1  MMGHHRRSSSVVANILTFSGRFSIPMRLQLFCIILLCLKRR 42
          MMG+HRRSS+V AN+ +FSGRFSIPMRLQL CIILL L  R
Sbjct: 1  MMGYHRRSSTVTANLCSFSGRFSIPMRLQLLCIILLLLAAR 41

[Close]
BLAST of Spg021645 vs. ExPASy TrEMBL
Match: A0A5D3C544 (ACT11D09.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00230 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-06
Identity = 37/92 (40.22%), Postives = 44/92 (47.83%), Query Frame = 0 

Query: 98  KYGPFPLEWIGRQAKGISRLPWKVVDVLQTLSSSPVLRFRRALSDRETVDVIDLLSLV-- 157
           K+G  P EWI R  KG  R PWK + +     S  VL      +DR      DL S +  
Sbjct: 155 KHGSHPFEWITRGVKGTFRNPWKDISIELPTFSRFVLVAWGMGNDR-----CDLSSFLTQ 214

Query: 158 GEFCCNPGRRDVRLWRPSPFDGFSCKSFFLCL 188
           G F    GRRD  +W P+P  GFSC S F  L
Sbjct: 215 GGFTVRVGRRDAHVWIPNPSRGFSCDSLFWLL 241

[Close]
BLAST of Spg021645 vs. ExPASy TrEMBL
Match: A0A5D3D7E5 (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001420 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.9e-05
Identity = 37/102 (36.27%), Postives = 51/102 (50.00%), Query Frame = 0 

Query: 86  KKSSGEFVCRAVKYGPFPLEWIGRQAKGISRLPWKVVDVLQTLSSSPVLRFRRALSDRET 145
           K  SG FV R + Y  F L  +G  A       W+++   +  S   +     AL  RET
Sbjct: 158 KHGSGPFVGR-ISYLRFLLSLLGLGA------GWQMI---RKRSFGKINGLGLALFVRET 217

Query: 146 VDVIDLLSLVGEFCCNPGRRDVRLWRPSPFDGFSCKSFFLCL 188
            ++  LLS +GE     G RDV +W+P+P +GF CKS F  L
Sbjct: 218 TEMASLLSFLGECDFREGGRDVPVWKPNPLEGFVCKSLFRLL 249

The following BLAST results are available for this feature:
BLAST of Spg021645 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK09969.11.3e-0961.11calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa][more]
XP_022151711.12.6e-0740.79uncharacterized protein LOC111019624 [Momordica charantia][more]
XP_022157070.13.8e-0675.61uncharacterized protein LOC111023880 [Momordica charantia][more]
TYK06495.18.4e-0640.22ACT11D09.5 [Cucumis melo var. makuwa][more]
TYK19487.11.2e-0436.27NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 isoform X1 [Cucumis... [more]
BLAST of Spg021645 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg021645 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CI746.1e-1061.11Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A6J1DFI21.3e-0740.79uncharacterized protein LOC111019624 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A6J1DS421.8e-0675.61uncharacterized protein LOC111023880 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5D3C5444.1e-0640.22ACT11D09.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00230 PE=4... [more]
A0A5D3D7E55.9e-0536.27NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 isoform X1 OS=Cucum... [more]
BLAST of Spg021645 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021645.1Spg021645.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003824 catalytic activity