Spg021605 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021605
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold9: 7205626 .. 7208876 (+)
RNA-Seq ExpressionSpg021605
SyntenySpg021605
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGTCTGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGGAAGAACTAAGAGGTGAGGTCTAGTTTTCTTTAAATTTAATCCATTTTCTAACAAATTTCATGAAGGAAGCTTGAGCTAAATCTGATGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACCAGGAGGATATCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGGTATGGTTGGAAAGCTTATTCCATTTTCTATAACTTTCATGAAGAATTCGTGAGCCAAAAATGACTTGAAGTAGGTTTAATTTCAAGAGAAATATAGAGGGTAGTAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATCGGTTGGGAATATTGTTTTCATTTCTTCAGGTAAGTTGTAGAGGGTTCGAAAATAAAGAGTTGGATATATAGTACATTAATTTTGGTCAAGTGTTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAAAATCTGGAAAATCTGGAAAAGTAGAATGTGAAGTGTGATTTTTGATTCAAGTGCTTAGAATTCATGAGCATGGAACGACAAAACTACTTATGGTTCTAATGCTCGGTTTTGGTTGTTTCACAGGCCAAGAGGAAGTAGGTCAAGTCTACAGACCAGGAAACTAGCTAAGACAGTGAGTGACAAAACAAATTTCGAAAATTGTTTCTAAACGATTGTTCATGAGTAGATGTTTTATATGTTTTTCTATGAATGATACATGATTTCTATGAATGGTTTCAAGCATGAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGATTATTGACTTTATGAAAAGTAGTTGAAACGATATCATTTTAAGTAAAGTATGTATTAGCAAGTACTGTTTAAAGATTTTCAGTGTTTCACGAGCAAGCTGAGTAAGCTTGAGATTTAGGAAAGATAAAGATAAGCAGGCATGTTTGAATGTTTTCATGTGATTTTCTGAGACTTTTATCGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGACGGGCCCCACTACGAAAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGAGCTAGTAACCGTTGGTTGTACTGGGCATGCCCTACACAACGTTGATTTGTCATGTTAGTTAAGATGTTTTATATAATTGATATGCCTTGTTAGATTTTAATAACGTACTTGTGGGTTATTTGAGAAAGCTTTTATGGTTACACGTTTATGTTAAACGCTTTGATTGAACATATTTATACGTTTAAAGGTTTATCACGTGTTCTGATTTGCGGATTTACAGTTTTTAAATTTAGTCACTCATTGGGCTTCGTAGCTCACTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGCTTTTGTAAGGATTGAATAATTGACGGTTTGTGTAAGTTCTAGAGGTCGTGGTTGTATAAACCCCAGTTGAATATGTTTTTGGTTGTGATATGTATATCAGGTTATTTTCTAAACCGAGTTACGTCAAGGCTGCACCCTATGTATGTCTACAGGTTTTCAGGGATTCCGCTGTGTTGTGTTTCATGTAGAATATTTTATATCTAAGATTAGAATGTTTATCAGGTTCAACGTTTCAAGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTTCCGGACTATGCTAGCAGGTGGTCCGGGAGGAGGTGTGACATTTAGTCAGCATTACCCTTAAGGCATGACTTATAGGGAGGTAATGAGTCGTCTTCTAACCTGTTTAAAAGTTCATTTTAGGCCAATCTTCAATCCTATTGAAATTTGATACGACCTAACCTCAAGTGCCAAAGATAGGTACTTTTGAGAAACTTGTTGCCTTTTGGTTGAGTCTCAGCAGTTTAAATATCTCATAAAAAAAATGCTCTAGACTCTGTTGGTCTTAAACAACATATATGTTATTCTTCATGTTTGCAGAACAAATATTGGCATCCTTTTGAAATGAACGGTTCATACATAAAAGGTAACATAATAGCCTTGTTCTTGCAAACAAGATATTGAAATCAAAATTTCTTTTAATCTTAGGAACCATATACATTAAACAATATGTAACGTTCCTGAGAGAAGAATAACTTTATGTCTCCCACTGCCTTAGCCAAGATAAACTCTTCTATTTTAACTCTAAGAGTCATCTTAACTAGTTCACAGCTTAGCGCTAGGAACTCATTCATGGAAAAGAACATACGCGATTTAGTGGGTCCTGAACTGAATATCCAGGTTGAATCACTATTCTTACTAAGCACGTATTTCAAGACGAATAAATCATATTTCAAGTCTTGGATCATGTTCTTTTTAGCCAGGCAGTTTTCTATGTTATATTTATCATGAACATTGCGAGAATGAAATAGATATAACATCTTGAGGACATATTACATTTTAAGACCGTTTCCATATCACTTACCATGATCTAGTGTTTAAAGTTTGTTTAGTTGTATGTTTTATACCAATAACGAATTTGGCGTATTAAGAGGCATTTTATAGAACCTATACTTATCGCTGAAAATAAACAAATAAACTTTAAATCGGTTGTCTAATGTTTTAACCCCTTTTCTAATCCAATGAATTTAGCAAAAGTAATTAAGCGCCCTATGATTCATAATTCTTTTGCAATGATACTTTAGAGGTTCAGAGTAACTACCACCGAGGGGTGGTCAGCTAGTCCTCCTCTGAATTGAGACATTCTCAACCAAACGTTAACACTATAATCGCTTATATCTTGTTATTTGTTTAGTTACCGTTGTTCGGTCAATGATCACAATCCCGTAAGTATTATCCTCCATTTTCAGATTCCAGAGGACGACCCCAACAATGCTACCGAATGGAAAAGCTAATGTTGGGAATGGCCCTAAGAAACCTTATCCACTTCTGGAGTTCGCGTTGTTCCAAATCCCATGTTACATCCCTCCGAATGGTGTAGTAGCTCCAGGGTATACTTAG

mRNA sequence

ATGGAAGAGTCTGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGGAAGAACTAAGAGAGCACAGAATTTTCGTGCAAACCAGGAGGATATCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGAGGGTAGTAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATCGGTTGGGAATATTGTTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCAAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCTAAACCGAGTTACGTCAAGGCTGCACCCTATGTATGTCTACAGATTCCAGAGGACGACCCCAACAATGCTACCGAATGGAAAAGCTAATGTTGGGAATGGCCCTAAGAAACCTTATCCACTTCTGGAGTTCGCGTTGTTCCAAATCCCATGTTACATCCCTCCGAATGGTGTAGTAGCTCCAGGGTATACTTAG

Coding sequence (CDS)

ATGGAAGAGTCTGGGTTCAACCTGCCTATCTCTGGTTTTTTATTCGGTTTGAGCTACACAGGAAGAACTAAGAGAGCACAGAATTTTCGTGCAAACCAGGAGGATATCTGGTTTTCTTTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGAGGGTAGTAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATCGGTTGGGAATATTGTTTTCATTTCTTCAGGCCAAGAGGAAGTAGGTCAAGTCTACAGACCAGGAAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCTAAACCGAGTTACGTCAAGGCTGCACCCTATGTATGTCTACAGATTCCAGAGGACGACCCCAACAATGCTACCGAATGGAAAAGCTAATGTTGGGAATGGCCCTAAGAAACCTTATCCACTTCTGGAGTTCGCGTTGTTCCAAATCCCATGTTACATCCCTCCGAATGGTGTAGTAGCTCCAGGGTATACTTAG

Protein sequence

MEESGFNLPISGFLFGLSYTGRTKRAQNFRANQEDIWFSLVFRAFWGVQVESEAPFEGSREARICVFCVRGISGQIGWEYCFHFFRPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLHPMYVYRFQRTTPTMLPNGKANVGNGPKKPYPLLEFALFQIPCYIPPNGVVAPGYT
Homology
[Close]
BLAST of Spg021605 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-10
Identity = 60/141 (42.55%), Postives = 72/141 (51.06%), Query Frame = 0 

Query: 30  RANQEDIWFSLVFRA--FWG-------VQVESEAPFEGSREARICVFCVRGISGQIGWEY 89
           R+N+E++  +L  R   F G        QVESEA F   R+              I +  
Sbjct: 84  RSNEEELPDTLHLRTSKFQGRNFIRESAQVESEALFGMVRKL-------------IQYPT 143

Query: 90  CFHFFRPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS--------------- 146
            F    PRG+R S QT KL KTVEIELPVPDTLPTSAESS S+SS               
Sbjct: 144 TFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFESVHVAIF 203

[Close]
BLAST of Spg021605 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 9.0e-08
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 87  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNR 141
           PRG+R SLQ  KL KTVEIELP+PDTLPTS+ESS+S+SS                YF  +
Sbjct: 91  PRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHVEIFCYFTKQ 150

[Close]
BLAST of Spg021605 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 1.5e-07
Identity = 41/76 (53.95%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 86  RPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLN 145
           RPRG+R SLQT KL KTVEIELP+PDTLPT AES  S+SS                YF N
Sbjct: 30  RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESVHVERLCYFTN 89

[Close]
BLAST of Spg021605 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 9.9e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 87  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLH 137
           PRG+R +L T KL KTVEIELPVPDTLPTSAESS+S+SS +L      +H
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVH 128

[Close]
BLAST of Spg021605 vs. NCBI nr
Match: KAA0066795.1 (uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK27942.1 uncharacterized protein E5676_scaffold384G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-05
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 87  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLHPMYVYRFQR 146
           PRG+R SLQTR+L KT  IELPVPDTLPTSAESS S+SS +L      +H    Y+ Q+
Sbjct: 64  PRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFYKGQQ 120

[Close]
BLAST of Spg021605 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.6e-10
Identity = 60/141 (42.55%), Postives = 72/141 (51.06%), Query Frame = 0 

Query: 30  RANQEDIWFSLVFRA--FWG-------VQVESEAPFEGSREARICVFCVRGISGQIGWEY 89
           R+N+E++  +L  R   F G        QVESEA F   R+              I +  
Sbjct: 84  RSNEEELPDTLHLRTSKFQGRNFIRESAQVESEALFGMVRKL-------------IQYPT 143

Query: 90  CFHFFRPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS--------------- 146
            F    PRG+R S QT KL KTVEIELPVPDTLPTSAESS S+SS               
Sbjct: 144 TFMNIWPRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSSTWLELYFESVHVAIF 203

[Close]
BLAST of Spg021605 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.3e-08
Identity = 39/70 (55.71%), Postives = 45/70 (64.29%), Query Frame = 0 

Query: 87  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLNR 141
           PRG+R SLQ  KL KTVEIELP+PDTLPTS+ESS+S+SS                YF  +
Sbjct: 91  PRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHVEIFCYFTKQ 150

[Close]
BLAST of Spg021605 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.4e-08
Identity = 41/76 (53.95%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 86  RPRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSS----------------YFLN 145
           RPRG+R SLQT KL KTVEIELP+PDTLPT AES  S+SS                YF N
Sbjct: 30  RPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFESVHVERLCYFTN 89

[Close]
BLAST of Spg021605 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 87  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLH 137
           PRG+R +L T KL KTVEIELPVPDTLPTSAESS+S+SS +L      +H
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVH 128

[Close]
BLAST of Spg021605 vs. ExPASy TrEMBL
Match: A0A5D3DWP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001370 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.9e-06
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 0 

Query: 87  PRGSRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSYFLNRVTSRLHPMYVYRFQR 146
           PRG+R SLQTR+L KT  IELPVPDTLPTSAESS S+SS +L      +H    Y+ Q+
Sbjct: 64  PRGNRPSLQTRELDKT--IELPVPDTLPTSAESSGSNSSTWLELYFESVHVEMFYKGQQ 120

The following BLAST results are available for this feature:
BLAST of Spg021605 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ96965.17.3e-1042.55uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa][more]
KAA0062263.19.0e-0855.71hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa][more]
KAA0040420.11.5e-0753.95NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0052218.19.9e-0766.00uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0066795.11.4e-0559.32uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of Spg021605 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg021605 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BET33.6e-1042.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V2F24.3e-0855.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TAS67.4e-0853.95NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UAH64.8e-0766.00CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5D3DWP36.9e-0659.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg021605 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021605.1Spg021605.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005488 binding