Spg021471 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021471
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Locationscaffold9: 6217877 .. 6221519 (+)
RNA-Seq ExpressionSpg021471
SyntenySpg021471
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGCATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCAGTTGCTTCACTATCCATCCAACAGCTTCAAGATATGATCACAAACTATATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGAATTCCAAACCTTATACTAAGAGGATTGATAACTTGAGAACGCCAATCGGGTATCAGCCACCGAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAGCATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGGTACACGAGGGGACCTACTAGTCAAACAGTTCATTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAATAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACAGCACTAGATGAACCATTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAACCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAAAAAACCAAGACCTTATACTCCCTAACATGAGGAAAGAAGGAAGGAATGACGAAGAGACTATAGAAGAATCTATGGTTGTAAACACAACCCTTCCCAAGTTGTCTTCAAAGGAAAAACGACAAACAAATGGAACGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTATCCTTTCCTCGATGCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAGAAAGTTGATGATCCTAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGCAGAGAAGTAAAAAGTTTTCTCAACCTCGACAACCGGTGACTGCGAAGGAACTCTTCTCCAGAACTTTCCACAAAAAAAGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTGGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCGGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTATCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGAAAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTAAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGAGGAAGATAAGGGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGATGAGTGCAAAAAAATTTTGAACTACGTTATGACTTGATCCCTTTACGTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAGGTTCAGTCTCTGCAAATAAAAAAAATGTAACAAATATTGAAGCGCGATAAGACAAATTGAAGAAACTCATCACTACTGGGGGCAACACAGCAAATGGAAGTTGTGCACCGTTATGAATGTGAAGCTACGAGTTGGATGAATAAAAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTCCGGTGTTCCACTCACCCTAAGTTCGCAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGCTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAGGTTCGAAAGGTTCTCACGCGCTCCGATGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTTCTCACGCAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTCCGCTGCAGTTCCTACTTCTCCAAGTTCGAAGGTTCTCAGGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCGGAGGTTCTCACACTGTTTCTTCCTCATGTTGTTTCGCTGCAGTTCCTTCTCTCCAAATTTGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCATTTCGTTGCAGTTCATTCTCTTAGAGTTCGAAGGTTCTCACGCTGTTTCGCTGTAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACATTGCTGCGTTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCGCTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTTGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCACGTTCGAAGGTTCTCACGCTGCACTACTTCGCTGTTCCTTCTCCAAGTTTGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGCTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTGTGCTGCTTTTTTCTCCAAGTTTGA

mRNA sequence

ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGCATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAAACTTTCCACAAAAAAAGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTGGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCGGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTATCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGAAAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGCTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAGGTTCGAAAGGTTCTCACGCGCTCCGATGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTTCTCACGCAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTCCGCTGCAGTTCCTACTTCTCCAAGTTCGAAGGTTCTCAGGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCGGAGGTTCTCACACTGTTTCTTCCTCATGTTGTTTCGCTGCAGTTCCTTCTCTCCAAATTTGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCTCAATTCCTTCTCTCCAAGTTCGAAGGTTCTCACATTGCTGCGTTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCGCTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTTGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGCTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTGTGCTGCTTTTTTCTCCAAGTTTGA

Coding sequence (CDS)

ATGAACAACTTTTACACGGGTTCTACTACCTATTGTTGCTTCAATGAAATGAGGTTGCAAGAAGATAAAGCTCCTATCATTGCAAGCGGTGAAATAACATTGCAGGGGGCATGTACTGATGGCAAGTTTCTTGTGAAGTATAACCCCTTGTTCGAGCCTGATTCTGACATAGTGACTGTCATGATGACTGAGACAAGAACTACGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAAACTTTCCACAAAAAAAGAAAAAGAAAACTTTGCAACTTCCTACTGCATCGACGTGGAAGAAGTTGACAATTCCAAGAAGGGTGAACAAAGGACCTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTGTGGTGTCCACCTCCACTCGACCTTCGGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTATCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGATAGAAAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCAAATTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGCTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTCCGCTGCAGTTCCTTCCTCCAGGTTCGAAAGGTTCTCACGCGCTCCGATGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCAAAGTTCTCGAAGGTTCTCACGCAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAAGTTCGAAGCACACGCTCCGCTGCAGTTCCTACTTCTCCAAGTTCGAAGGTTCTCAGGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCGGAGGTTCTCACACTGTTTCTTCCTCATGTTGTTTCGCTGCAGTTCCTTCTCTCCAAATTTGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCTCAATTCCTTCTCTCCAAGTTCGAAGGTTCTCACATTGCTGCGTTGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGTGTTTCGCTGTAGTTCCTTCTCTCCAAGGTTCTCATGCGCTGCGTTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTTTCACACACTTTGATACAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTACGCTGCTTCCTTCTCCAAGTTTGAAGGTTCTCATGCTACGCTAGAATGCGTTGCTGTGCTACTTTCTTCTTTAAGTTCGAAGGATCCCACATTGCGCTGTTGTGTTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTGTGCTGCTTTTTTCTCCAAGTTTGA

Protein sequence

MNNFYTGSTTYCCFNEMRLQEDKAPIIASGEITLQGACTDGKFLVKYNPLFEPDSDIVTVMMTETRTTEERMAEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESKLSTKKEKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLINTEGSLKFLPPKFEGSHALRCSSFLPNSKVLTRSAAVPSSKFEGSHALRCSSFLQVRRFSRAPLQFLPPGSKGSHALRCCSSFLQVRRFSRASLQFLLPKFEGSHALRCSSFSPSSKVLTRFAAVPSSKFSKVLTQGSHALRCSSFLQSSKHTLRCSSYFSKFEGSQVASLQFFPPSSEVLTLFLPHVVSLQFLLSKFEGSHAFRCSSFSPSLKVHALRCSSFSQFLLSKFEGSHIAALQFLLSSLKVLTCFAVVPSLQGSHALRCSSFSPSSKVFTHFDTVPSLQVRRFSRYAASFSKFEGSHATLECVAVLLSSLSSKDPTLRCCVASFTKFEGSHAALLCCFFLQV
Homology
[Close]
BLAST of Spg021471 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-33
Identity = 86/129 (66.67%), Postives = 100/129 (77.52%), Query Frame = 0 

Query: 128 EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVS 187
           EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST  R SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 188 TSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLIN 247
           TSKK R STS FDRLK+TNDQ +R++++L  K F+E   D K+ S +PSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 248 TEGSLKFLP 257
           TEGSL   P
Sbjct: 240 TEGSLTVKP 248

[Close]
BLAST of Spg021471 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 8.6e-33
Identity = 84/129 (65.12%), Postives = 99/129 (76.74%), Query Frame = 0 

Query: 128 EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVS 187
           EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST  R SAF+RLS+S
Sbjct: 61  EEVDNSNEIKQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 120

Query: 188 TSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLIN 247
           TSKK R STS FDRLK+TNDQ +R++++L  K F+E   D K+ S +PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDIN 180

Query: 248 TEGSLKFLP 257
           TEGSL   P
Sbjct: 181 TEGSLTVKP 189

[Close]
BLAST of Spg021471 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-32
Identity = 88/142 (61.97%), Postives = 105/142 (73.94%), Query Frame = 0 

Query: 115 EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVST 174
           E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST
Sbjct: 528 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTST 587

Query: 175 STRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSI 234
             R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++++L  K F+E   D K+ + +
Sbjct: 588 YARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRV 647

Query: 235 PSRMKRKFSVLINTEGSLKFLP 257
           PSRMKRK SV INTEGSL   P
Sbjct: 648 PSRMKRKLSVDINTEGSLTVKP 665

[Close]
BLAST of Spg021471 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-32
Identity = 88/142 (61.97%), Postives = 105/142 (73.94%), Query Frame = 0 

Query: 115 EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVST 174
           E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST
Sbjct: 528 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTST 587

Query: 175 STRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSI 234
             R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++++L  K F+E   D K+ + +
Sbjct: 588 YARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRV 647

Query: 235 PSRMKRKFSVLINTEGSLKFLP 257
           PSRMKRK SV INTEGSL   P
Sbjct: 648 PSRMKRKLSVDINTEGSLTVKP 665

[Close]
BLAST of Spg021471 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-32
Identity = 85/132 (64.39%), Postives = 102/132 (77.27%), Query Frame = 0 

Query: 128 EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVS 187
           EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   EEENQC  ST TR SAF+ LS+S
Sbjct: 463 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSIS 522

Query: 188 TSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLIN 247
           TSKK R STS FDRLK+ NDQ +R++++L VK F+E   D K+ S +PSRMKRK SV IN
Sbjct: 523 TSKKDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDIN 582

Query: 248 TEGSLKFLPPKF 260
           TEGSL  + P+F
Sbjct: 583 TEGSL-IVKPRF 593

[Close]
BLAST of Spg021471 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.4e-34
Identity = 86/129 (66.67%), Postives = 100/129 (77.52%), Query Frame = 0 

Query: 128 EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVS 187
           EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EEENQC  ST  R SAF+RLS+S
Sbjct: 120 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 179

Query: 188 TSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLIN 247
           TSKK R STS FDRLK+TNDQ +R++++L  K F+E   D K+ S +PSRMKRK SV IN
Sbjct: 180 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDIN 239

Query: 248 TEGSLKFLP 257
           TEGSL   P
Sbjct: 240 TEGSLTVKP 248

[Close]
BLAST of Spg021471 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.2e-33
Identity = 84/129 (65.12%), Postives = 99/129 (76.74%), Query Frame = 0 

Query: 128 EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVS 187
           EEVDNS + +QRTS+FDRIKP TTR  VFQR+SMA  EEENQC  ST  R SAF+RLS+S
Sbjct: 61  EEVDNSNEIKQRTSIFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYARTSAFKRLSIS 120

Query: 188 TSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLIN 247
           TSKK R STS FDRLK+TNDQ +R++++L  K F+E   D K+ S +PSRMKRK SV IN
Sbjct: 121 TSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHSRVPSRMKRKLSVDIN 180

Query: 248 TEGSLKFLP 257
           TEGSL   P
Sbjct: 181 TEGSLTVKP 189

[Close]
BLAST of Spg021471 vs. ExPASy TrEMBL
Match: A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.1e-33
Identity = 85/132 (64.39%), Postives = 102/132 (77.27%), Query Frame = 0 

Query: 128 EEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVSTSTRPSAFQRLSVS 187
           EEVDNS + +QRTSVFDRIKP TTR SVFQR+S+   EEENQC  ST TR SAF+ LS+S
Sbjct: 463 EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSIS 522

Query: 188 TSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSIPSRMKRKFSVLIN 247
           TSKK R STS FDRLK+ NDQ +R++++L VK F+E   D K+ S +PSRMKRK SV IN
Sbjct: 523 TSKKDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDIN 582

Query: 248 TEGSLKFLPPKF 260
           TEGSL  + P+F
Sbjct: 583 TEGSL-IVKPRF 593

[Close]
BLAST of Spg021471 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.1e-33
Identity = 88/142 (61.97%), Postives = 105/142 (73.94%), Query Frame = 0 

Query: 115 EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVST 174
           E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST
Sbjct: 528 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTST 587

Query: 175 STRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSI 234
             R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++++L  K F+E   D K+ + +
Sbjct: 588 YARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRV 647

Query: 235 PSRMKRKFSVLINTEGSLKFLP 257
           PSRMKRK SV INTEGSL   P
Sbjct: 648 PSRMKRKLSVDINTEGSLTVKP 665

[Close]
BLAST of Spg021471 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 7.1e-33
Identity = 88/142 (61.97%), Postives = 105/142 (73.94%), Query Frame = 0 

Query: 115 EKENFATSYCIDVEEVDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMAATEEENQCVVST 174
           E +N   SY    EEVDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE+NQC  ST
Sbjct: 528 EVDNNYDSY----EEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTST 587

Query: 175 STRPSAFQRLSVSTSKKSRSSTSIFDRLKVTNDQPRRKIENLDVKLFNEVGSDKKLQSSI 234
             R SAF+RLS+STSKK R STS FDRLK+TNDQ +R++++L  K F+E   D K+ + +
Sbjct: 588 YARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRV 647

Query: 235 PSRMKRKFSVLINTEGSLKFLP 257
           PSRMKRK SV INTEGSL   P
Sbjct: 648 PSRMKRKLSVDINTEGSLTVKP 665

The following BLAST results are available for this feature:
BLAST of Spg021471 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0044978.11.3e-3366.67retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0050734.18.6e-3365.12gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... [more]
TYK08944.11.5e-3261.97retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0055462.11.5e-3261.97retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0040811.11.5e-3264.39retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Spg021471 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg021471 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TQ066.4e-3466.67Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3BBF94.2e-3365.12Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7TGM17.1e-3364.39Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7UI097.1e-3361.97Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3CCI87.1e-3361.97Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of Spg021471 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021471.1Spg021471.1mRNA