Spg021313 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg021313
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribosomal L28 family
Location	scaffold6: 47503305 .. 47506253 (+)
RNA-Seq Expression	Spg021313
Synteny	Spg021313

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCCTTTTGCAAGTCTGTCGGAATATCTCTGTACAAACAGATATTAGGGTTCCGTTCGCGAGACTAAAATTCGAATTTTGGACTAGTCGCTCACTCTCAACGATCGGCACTAAGGTAACGTCACTGGATTTTCGATCAATTTTGCTTCGGCACTTTCTCAATACATGCTTCCTCTAACTCGACTTTCAGATTCCAGTTTCTGGCTTTCATTTCTTTCTCATCGTGATTCATCGGAACGGGAACGGACTCCTTGGTTTTTGTTCGTTTATGTTCTGTTTATGTTCTATGGAATTTGATCATTTTTTCTGGATTTGAGTGTGATTTGCACTTTTAATCATTTGGTTGAATGTGATGTTGTTAGTTTAACTAGCCGGCGATTAAGGTGAGTCTTGAGTGGCGTCATTTTCAGATTGCCAACTGTTTCCACTGAATATTGCTGATCATTTCCCTTTCTGTTGATGGATTTTTCTTTTTTCTGCGAAGGTTCCTTCCTGATGGATTTTTTTGTTGCTTCCTAGGAATTTACAGAACCATGGACTGAAATAAAAGGGTGCAAATTGCTGATGAAAACGTTATTCCTTCTCAAATACTGCTGCTCAAAATACAGACCCCAACCTGTATCGTTTGGAATTTCATCGAGCCATTCTCGCAGATCGTTATACTTCTGTTCCTATTTTTAGGAGTATTTTTGGATCACAGCTGATTCTGCCGACTACAAGAGAGAGCCGATAATGGCGTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAAGTTGGAGAGAACAATTTGGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATACCGGACAGCAAAGTGGTGATGAATAGGGCAAAGCGCGGTATTTATGCAGGCCGTCACATCCAGTTCGGTAACCGTGTCAGTGAAGACGGTGGCAACAAGTATAAACCTCTTTTCTCTCCATTCTTTCCTTTATTTTTCTCAAAATCTTTGGTTGAGATTCTCTCTGAATTTGGATGCATTTTACTGATTATTCATAATTAGACCATTTGTTCTTTTTAATTGCATAGCTTGATTAATTTTTTCTTACAATTGCGAGTGAAGTTGCCGATAATCGATGTACTGCCCTCTGATTGATAGCAACGAGGAAATTTGGCAGAAAATTCTTGCTGTTACTATTTTGAAAATTATGTATTTGCGTTTGTGCTTTAGATTTTTTCTTTTCAAATATGACAATATTGTTGCTTCCAAGTTCGCCGGAGGATTTATTGGATTTGACTGCTGCTCATTTTCACTTTCTAAATAGCCATGTATATAGATGAAACAATGTTCATAGATTACTGGTTCACTGTCTACCGTACTGGAATTGTGGATATTCATTCATGTGAACTTTCAAATAACGAGTAATCACCTCACCTGTTCAAGGTGATTTAGATATGTTTTTTGATGCCTTGTCATGATGAATGTTTGGGTTTGGATGGGTGGGGCTAGCATATGAGTCTATTGTGCTGCTAGAACTCTTGACCATACTGCTTGATTAGGAGTTGTAGATTTAGAACTAAGTATAGCATTCTATATACATGTCGAAACGAACCTCTAGACGAGTTGTTTGGTGCATGGCTTGGGCCAAGATGGATTTGGCTTCCTAAGCCCTGTGTTCGGTTTGAGAGAGAAACTGTTCGACCCAAGTTCAATTAAACGAACCTCTAAACGAGGTGTTTGGTGCATGACTTGGGCTAAGATGGATTTGGCTTCCTAAGCCCTATGTTCGGTTTGAGAGAGGAGCTGTTCGACCCAAGTTCAATTAGCTTTTGAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAGTCTTCAACCTGTGTTTCCTAAAATTGCACCCACATACAGCATATGATCCAAATGCCCCCCCTAGATTTTTGAGAAGAGAGAATGAACTCAAAGTTGTGTTTCCTTCTGCGTGCAAAATTCATTGCTTTTTGTTGTATGCATGGAGTTCTTAATATACATGTCTAGGGTATGCCTCTCTTTCTCTTGGAATTCAGAAATTTGAGAGCACAATGTAATCACACTTCGTTTCCTTCCTTTGTATTGGCTTTATGTTATACAACTATTCAAGGGTTCGTTACCTTTTTCAATTCTTTTGCTCACAGACCTTCATATTGACATAATCTTCTACTGATTCATATTTTCATGCGAAAATTGTTGTTGCCGTCATCATCTTCTTCGTTTTCCAATTTTGGAGTATTTACCCTTTATTTGCCGGTGCTTATAGGTCAAGAAGGACTTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACAACTCATGCCCTTCGATGCATTGACAAAGTTGGTGGGATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGATACCGAAATGGGGCTGTTTTGGAAGACAAAGATCGAGAAGCTCTATGAAGAACTTGGGCAGATGGAGGTCGTTTTCTTCTCGCCGGAGGATGAAGCTAAATTTGAACAGGGCTTTAGAGAACTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGAAAGATGTATGGTAGTTCGAGCAAACACGATCAGATTGAGGAGGGACGATCAGACCGCCATGGACCTAGCGAGGAAGCTGCAGATGGTTCCCAAGGAGGCTCACATGGTGATGATGGTCCTCAGCAGTGGGTTGCCAACGCCTAAATATTTATAGGTGACTTTTTTAAACTTGGGAGTTCAAGCCTTGACTTCTTCCTACCCCTTTCAAGATTTGTTTCCTCATTTTTAATGAAATCTTTTGTAGTTTATTTGTATTTTGTTTAATGAAAATACAGTTAGAAATGAGAATTGTTTTTGGAAATTGAGATGTTAAAACTTAAAAACTTATTGTTCAATAAAGTAGGCTAAAAATATGATTTGCCA

mRNA sequence

ATGGCGTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAAGTTGGAGAGAACAATTTGGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATACCGGACAGCAAAGTGGTGATGAATAGGGCAAAGCGCGGTATTTATGCAGGCCGTCACATCCAGTTCGGTAACCGTGTCAGTGAAGACGGTGGCAACAAGTCAAGAAGGACTTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACAACTCATGCCCTTCGATGCATTGACAAAGTTGGTGGGATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGATACCGAAATGGGGCTGTTTTGGAAGACAAAGATCGAGAAGCTCTATGAAGAACTTGGGCAGATGGAGGTCGTTTTCTTCTCGCCGGAGGATGAAGCTAAATTTGAACAGGGCTTTAGAGAACTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGAAAGATGTATGGTAGTTCGAGCAAACACGATCAGATTGAGGAGGGACGATCAGACCGCCATGGACCTAGCGAGGAAGCTGCAGATGGTTCCCAAGGAGGCTCACATGGTGATGATGGTCCTCAGCAGTGGGTTGCCAACGCCTAA

Coding sequence (CDS)

ATGGCGTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAAGTTGGAGAGAACAATTTGGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATACCGGACAGCAAAGTGGTGATGAATAGGGCAAAGCGCGGTATTTATGCAGGCCGTCACATCCAGTTCGGTAACCGTGTCAGTGAAGACGGTGGCAACAAGTCAAGAAGGACTTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACAACTCATGCCCTTCGATGCATTGACAAAGTTGGTGGGATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGATACCGAAATGGGGCTGTTTTGGAAGACAAAGATCGAGAAGCTCTATGAAGAACTTGGGCAGATGGAGGTCGTTTTCTTCTCGCCGGAGGATGAAGCTAAATTTGAACAGGGCTTTAGAGAACTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGAAAGATGTATGGTAGTTCGAGCAAACACGATCAGATTGAGGAGGGACGATCAGACCGCCATGGACCTAGCGAGGAAGCTGCAGATGGTTCCCAAGGAGGCTCACATGGTGATGATGGTCCTCAGCAGTGGGTTGCCAACGCCTAA

Protein sequence

MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMDTEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSSSKHDQIEEGRSDRHGPSEEAADGSQGGSHGDDGPQQWVANA

Homology

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BLAST of Spg021313 vs. NCBI nr
Match: XP_022145425.1 (uncharacterized protein LOC111014872 [Momordica charantia])

HSP 1 Score: 407.5 bits (1046), Expect = 7.2e-110
Identity = 204/221 (92.31%), Postives = 213/221 (96.38%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLAPGVK+SLKKCIPDSKVVMNRAKRGI+AGRHIQFGNRVS
Sbjct: 1   MAFRGKEMMKKVLKKVGEINLAPGVKESLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWK KI KLYEELGQMEVVFFSPEDEAKFEQGFRELKL+ERAARKEARR+ YGSS
Sbjct: 121 TEIGLFWKAKITKLYEELGQMEVVFFSPEDEAKFEQGFRELKLAERAARKEARRQTYGSS 180

Query: 181 SKHDQIEEGRSDRHGPSEEAADGSQGGSHGDDGPQQWVANA 222
           S HDQIEEGR+DRHG  +EAADGS+GGSHGDDG QQWVANA
Sbjct: 181 SNHDQIEEGRADRHGTGKEAADGSEGGSHGDDGSQQWVANA 221

[Close]

BLAST of Spg021313 vs. NCBI nr
Match: XP_022923524.1 (uncharacterized protein LOC111431195 [Cucurbita moschata])

HSP 1 Score: 400.6 bits (1028), Expect = 8.8e-108
Identity = 202/221 (91.40%), Postives = 213/221 (96.38%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWK KIEKLYEELGQMEVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180

Query: 181 SKHDQIEEGRSDRHGPSEEAADGSQGGSHGDDGPQQWVANA 222
           ++HDQIEEG++DR G SEE A GS+GGSHGDDGPQQ VANA
Sbjct: 181 TQHDQIEEGQADRAGSSEEVA-GSEGGSHGDDGPQQCVANA 220

[Close]

BLAST of Spg021313 vs. NCBI nr
Match: KAG6577758.1 (hypothetical protein SDJN03_25332, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 398.3 bits (1022), Expect = 4.4e-107
Identity = 201/221 (90.95%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWK KIEKLYEELGQMEVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGS 
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSL 180

Query: 181 SKHDQIEEGRSDRHGPSEEAADGSQGGSHGDDGPQQWVANA 222
           ++HDQIEEG++DR G SEE A GS+GGSHGDDGPQQ VANA
Sbjct: 181 TQHDQIEEGQADRAGSSEEVA-GSEGGSHGDDGPQQCVANA 220

[Close]

BLAST of Spg021313 vs. NCBI nr
Match: XP_038876561.1 (uncharacterized protein LOC120068991 [Benincasa hispida])

HSP 1 Score: 396.7 bits (1018), Expect = 1.3e-106
Identity = 201/221 (90.95%), Postives = 212/221 (95.93%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VMNRA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKIVMNRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWKTKIEK+YEELGQMEVVFFSPEDEAKFEQGFRELKL+ERAARKEARR+MYGSS
Sbjct: 121 TEIGLFWKTKIEKMYEELGQMEVVFFSPEDEAKFEQGFRELKLTERAARKEARRQMYGSS 180

Query: 181 SKHDQIEEGRSDRHGPSEEAADGSQGGSHGDDGPQQWVANA 222
           +KHDQI+EG+ DRHG SEEAA  S+GGSHGDDG QQ VANA
Sbjct: 181 TKHDQIKEGQEDRHGSSEEAA-SSEGGSHGDDGHQQKVANA 220

[Close]

BLAST of Spg021313 vs. NCBI nr
Match: XP_023553194.1 (uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.0 bits (1016), Expect = 2.2e-106
Identity = 199/221 (90.05%), Postives = 211/221 (95.48%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQ KRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQGKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWK KIEKLYEELGQMEVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180

Query: 181 SKHDQIEEGRSDRHGPSEEAADGSQGGSHGDDGPQQWVANA 222
           ++HDQIEEG++DR   SEE A GS+GGSHG DGPQQWV+NA
Sbjct: 181 TQHDQIEEGQADRAESSEEVA-GSEGGSHGGDGPQQWVSNA 220

[Close]

BLAST of Spg021313 vs. ExPASy Swiss-Prot
Match: P36525 (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-12
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 0


Query: 30  KKCIPDSKV----VMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G+Y G  +QFGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMDTEMGLFWKTKIEKL 135
           +R I +K+T   L+ I K GGID YL K    ++       WK +   L
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTKEKSARIKELGPTGWKLRYRVL 159

[Close]

BLAST of Spg021313 vs. ExPASy Swiss-Prot
Match: A0L5U1 (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rpmB PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-09
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSH-SQRKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KVGGIDEYLLK 114
             GG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

[Close]

BLAST of Spg021313 vs. ExPASy Swiss-Prot
Match: A9HS05 (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / CCUG 37298 / CIP 103539 / LMG 7603 / PAl5) OX=272568 GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-09
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KVGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

[Close]

BLAST of Spg021313 vs. ExPASy Swiss-Prot
Match: O60091 (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-09
Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 41  NRAKRGIYAGRHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRC 100
           ++ ++ +Y G   + GN      G+K+RR W PN   K L+S +L+    + VT+  LR 
Sbjct: 25  SKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRT 84

Query: 101 IDKVGGIDEYLLKT 115
           IDK GG+DEYL+K+
Sbjct: 85  IDKEGGLDEYLVKS 98

[Close]

BLAST of Spg021313 vs. ExPASy Swiss-Prot
Match: Q5FUP5 (50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rpmB PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.5e-09
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T  +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETTLISDILGASVRMRLSTDGIRTVE 61

Query: 103 KVGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDSFLLGTPNRKLPTE 80

[Close]

BLAST of Spg021313 vs. ExPASy TrEMBL
Match: A0A6J1CUG4 (uncharacterized protein LOC111014872 OS=Momordica charantia OX=3673 GN=LOC111014872 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.5e-110
Identity = 204/221 (92.31%), Postives = 213/221 (96.38%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGE NLAPGVK+SLKKCIPDSKVVMNRAKRGI+AGRHIQFGNRVS
Sbjct: 1   MAFRGKEMMKKVLKKVGEINLAPGVKESLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWK KI KLYEELGQMEVVFFSPEDEAKFEQGFRELKL+ERAARKEARR+ YGSS
Sbjct: 121 TEIGLFWKAKITKLYEELGQMEVVFFSPEDEAKFEQGFRELKLAERAARKEARRQTYGSS 180

Query: 181 SKHDQIEEGRSDRHGPSEEAADGSQGGSHGDDGPQQWVANA 222
           S HDQIEEGR+DRHG  +EAADGS+GGSHGDDG QQWVANA
Sbjct: 181 SNHDQIEEGRADRHGTGKEAADGSEGGSHGDDGSQQWVANA 221

[Close]

BLAST of Spg021313 vs. ExPASy TrEMBL
Match: A0A6J1E6M9 (uncharacterized protein LOC111431195 OS=Cucurbita moschata OX=3662 GN=LOC111431195 PE=3 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.3e-108
Identity = 202/221 (91.40%), Postives = 213/221 (96.38%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VMNRAKRGI+AGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWK KIEKLYEELGQMEVVFFSPEDEAKFEQGFR+LKLSERAARKEARR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180

Query: 181 SKHDQIEEGRSDRHGPSEEAADGSQGGSHGDDGPQQWVANA 222
           ++HDQIEEG++DR G SEE A GS+GGSHGDDGPQQ VANA
Sbjct: 181 TQHDQIEEGQADRAGSSEEVA-GSEGGSHGDDGPQQCVANA 220

[Close]

BLAST of Spg021313 vs. ExPASy TrEMBL
Match: A0A6J1HLI0 (uncharacterized protein LOC111465250 OS=Cucurbita maxima OX=3661 GN=LOC111465250 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.6e-102
Identity = 194/212 (91.51%), Postives = 204/212 (96.23%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGI+AGRHIQFGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIFAGRHIQFGNRVS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWK KIEKLYEELGQMEVVFFSPEDEAKFEQGFR+LKLSERAARKE RR+MYGSS
Sbjct: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKETRRRMYGSS 180

Query: 181 SKHDQIEEGRSDRHGPSEEAADGSQGGSHGDD 213
           ++ DQIEEG++DR G SEE A GS+GGSHGDD
Sbjct: 181 TQRDQIEEGQADRVGSSEEVA-GSEGGSHGDD 211

[Close]

BLAST of Spg021313 vs. ExPASy TrEMBL
Match: A0A0A0L1P8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 1.1e-100
Identity = 190/220 (86.36%), Postives = 203/220 (92.27%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWK+KIE LYEELG+MEVVFFSPEDE KFEQ F+ELKLSERAAR+EARR+MYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 SKHDQIEEGRSDRHGPSEEAADGSQGGSHGDDGPQQWVAN 221
           +K +QI+EG    +G SEEAA  S+GGSHGDD  QQWVAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

[Close]

BLAST of Spg021313 vs. ExPASy TrEMBL
Match: A0A1S3BK21 (54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.5e-94
Identity = 187/222 (84.23%), Postives = 201/222 (90.54%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDK GGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARRKMYGSS 180
           TE+GLFWK KIE LYEELG+MEVVFFSPEDEAKFEQ F++LKLSERAARKEARRK+YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 -SKHDQIEEGRSDRHGPSEEAADGSQGGSHG-DDGPQQWVAN 221
            +K +QI+EG  D +  SEEAA  S+GGSHG DD  QQWVAN
Sbjct: 181 TNKLNQIKEGGEDTNVSSEEAA-SSEGGSHGDDDSHQQWVAN 221

[Close]

BLAST of Spg021313 vs. TAIR 10
Match: AT4G31460.1 (Ribosomal L28 family )

HSP 1 Score: 284.3 bits (726), Expect = 8.6e-77
Identity = 144/208 (69.23%), Postives = 168/208 (80.77%), Query Frame = 0


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+KVVM RAKRG+YAGRHIQ+GNRVS
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRTWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKVGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDK GGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEMGLFWKTKIEKLYEELGQMEVVFFSPEDEAKFEQGFRELKLSERAARKEARR--KMYG 180
           TEMGL+WKTK+E  Y ELGQMEV FF+PEDEAK EQGF++L ++++ AR+EARR  +  G
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTFRKKG 180

Query: 181 SSSKHDQIEEGRSDRHGPSEEAADGSQG 207
             +K D  EE   +  G SE   +   G
Sbjct: 181 GGNKGD--EEASIEGGGGSESHQEDDNG 206

The following BLAST results are available for this feature:

BLAST of Spg021313 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145425.1	7.2e-110	92.31	uncharacterized protein LOC111014872 [Momordica charantia]	[more]
XP_022923524.1	8.8e-108	91.40	uncharacterized protein LOC111431195 [Cucurbita moschata]	[more]
KAG6577758.1	4.4e-107	90.95	hypothetical protein SDJN03_25332, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038876561.1	1.3e-106	90.95	uncharacterized protein LOC120068991 [Benincasa hispida]	[more]
XP_023553194.1	2.2e-106	90.05	uncharacterized protein LOC111810681 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg021313 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P36525	7.2e-12	36.70	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
A0L5U1	2.0e-09	43.66	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
A9HS05	4.4e-09	40.00	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
O60091	4.4e-09	39.19	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
Q5FUP5	7.5e-09	40.00	50S ribosomal protein L28 OS=Gluconobacter oxydans (strain 621H) OX=290633 GN=rp...	[more]

BLAST of Spg021313 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUG4	3.5e-110	92.31	uncharacterized protein LOC111014872 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1E6M9	4.3e-108	91.40	uncharacterized protein LOC111431195 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A6J1HLI0	1.6e-102	91.51	uncharacterized protein LOC111465250 OS=Cucurbita maxima OX=3661 GN=LOC111465250...	[more]
A0A0A0L1P8	1.1e-100	86.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G005030 PE=3 SV=1	[more]
A0A1S3BK21	3.5e-94	84.23	54S ribosomal protein L24, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490718...	[more]

BLAST of Spg021313 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31460.1	8.6e-77	69.23	Ribosomal L28 family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 218..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..221
None	No IPR available	PANTHER	PTHR13528:SF11	BNAC03G67590D PROTEIN	coord: 1..198
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 45..103 e-value: 3.7E-20 score: 71.8
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 1..198
IPR037147	Ribosomal protein L28/L24 superfamily	GENE3D	2.30.170.40	Ribosomal protein L28/L24	coord: 47..118 e-value: 3.7E-22 score: 80.1
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 42..110 score: 14.135883
IPR034704	L28p-like	SUPERFAMILY	143800	L28p-like	coord: 43..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg021313.1	Spg021313.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome