Spg021289 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021289
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
Locationscaffold6: 48318020 .. 48319205 (+)
RNA-Seq ExpressionSpg021289
SyntenySpg021289
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTAATTTGCTGTGGTGGAAGAAAAAGCCTCCGGAAATGGAAGCGGAAGGAATCGTGGAGCATCGAAGATCGATTGCGGCTCCATCCATATTTTTGATCGTCATTGCTTTTCAGTTTCTCGGTAAATGGCTGGAGAACCTGAAGAAGGTTCGCCTTTTCCCTTAATTTTCTGTTTTCCGTCGGAATCTTTTTCATGATCGTATTTTCTATCGTTCTGCTTGCGTATCAATCCTAAACTTGTTGATTATAGTTGAATTTTGACGTGTACCTCAAATTTCGGGCTGTAGTGTTTCAGTTTTCCGTAGACAGGCTTAAGAATGTATTATATCCAACTGGGCTTCGCGAAGTTCACGTATTGGATTGGAGGCACGGTGATTTGATTAGTTTAGCGACGTGATGTATTCAATTTGGAGATCTATTGATGTTTTCAGTCTTAATATCTAAGAGTTTGCTGTGTTATAATTGTTATCCGTCCTATCTTGGCAACTTGTTTGTTTGAAACAATCGTGTTTCGATCGTGAATGTACTTTTCAGGGAGGTTCGAACAATCAGGTGGAAATGGAGCTGCGAAAATCAATAAAGCAGCTTCTGAGGGAGGCAAGCACCTTATCTCAGTGAGTAAATTTTTCTAGCTCGGATCAACATTAAACATTGCATAATTCGACTCAAATTCCTCATTCAGTATGACTTTATAATTCTTATGACTATCCTGGGGGTCACGTTTATTTGCCTTTATGTTAATGTAGACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAAGAACTGGCAAATTGTGAGGCTAATTAATCGATCCCCTAAAATCTCAAATTTTCCTTCAATTTACTTTTTCTGTTTTTTGACTAATGAGTTGCTTGACGAATATTGTGAAATGCTTTGTACCACTACTTATCAATAACCGGTAGGGAAATAATTTTTCTATTGTATGGTAAGGTTTGTTATATGAATCATTGATGCATGAGCAGTTTTGAGATGTTGCGTGGAGTATTGACTGCTATGTGATATAGGAATCTCGAGATTAGAAGCTTGAGCAACCATTGAAAAGAATGTTTCTCAATTTTTTTAAGAAAAGGTTTATAGGCTCCAAACTAATCGTAAGATGGGTGTGTATGCTGGTATTTTTTTTTTTTTTTTGAAACCAAG

mRNA sequence

ATGGAAGCGGAAGGAATCGTGGAGCATCGAAGATCGATTGCGGCTCCATCCATATTTTTGATCGTCATTGCTTTTCAGTTTCTCGGTAAATGGCTGGAGAACCTGAAGAAGTTGAATTTTGACGTGTACCTCAAATTTCGGGCTGTAGTGTTTCAGTTTTCCGTAGACAGGCTTAAGAATGTATTATATCCAACTGGGCTTCGCGAAGGAGGTTCGAACAATCAGGTGGAAATGGAGCTGCGAAAATCAATAAAGCAGCTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAAGAACTGGCAAATTGTGAGGCTAATTAA

Coding sequence (CDS)

ATGGAAGCGGAAGGAATCGTGGAGCATCGAAGATCGATTGCGGCTCCATCCATATTTTTGATCGTCATTGCTTTTCAGTTTCTCGGTAAATGGCTGGAGAACCTGAAGAAGTTGAATTTTGACGTGTACCTCAAATTTCGGGCTGTAGTGTTTCAGTTTTCCGTAGACAGGCTTAAGAATGTATTATATCCAACTGGGCTTCGCGAAGGAGGTTCGAACAATCAGGTGGAAATGGAGCTGCGAAAATCAATAAAGCAGCTTCTGAGGGAGGCAAGCACCTTATCTCAACCATCTACATTTGCACAAGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAAGAACTGGCAAATTGTGAGGCTAATTAA

Protein sequence

MEAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKNVLYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELANCEAN
Homology
[Close]
BLAST of Spg021289 vs. NCBI nr
Match: XP_023007643.1 (uncharacterized protein LOC111500212 [Cucurbita maxima])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 80/118 (67.80%), Postives = 83/118 (70.34%), Query Frame = 0 

Query: 2   EAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKNV 61
           EAEGIVEHR SIAAP IFLIVIAFQFL +WLE+LKK                        
Sbjct: 6   EAEGIVEHRSSIAAPCIFLIVIAFQFLARWLEHLKK------------------------ 65

Query: 62  LYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                   GGSN+QVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 66  --------GGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 91

[Close]
BLAST of Spg021289 vs. NCBI nr
Match: XP_022923433.1 (uncharacterized protein LOC111431128 [Cucurbita moschata] >KAG6577814.1 Guided entry of tail-anchored proteins factor 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015853.1 Tail-anchored protein insertion receptor WRB [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 79/118 (66.95%), Postives = 83/118 (70.34%), Query Frame = 0 

Query: 2   EAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKNV 61
           EAEGIVEHR SIAAP IFL+VIAFQFL +WLE+LKK                        
Sbjct: 4   EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKK------------------------ 63

Query: 62  LYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                   GGSN+QVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 64  --------GGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]
BLAST of Spg021289 vs. NCBI nr
Match: XP_023552250.1 (uncharacterized protein LOC111809975 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 4.3e-27
Identity = 78/118 (66.10%), Postives = 83/118 (70.34%), Query Frame = 0 

Query: 2   EAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKNV 61
           EAEGIVEHR S+AAP IFL+VIAFQFL +WLE+LKK                        
Sbjct: 4   EAEGIVEHRSSLAAPCIFLVVIAFQFLARWLEHLKK------------------------ 63

Query: 62  LYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                   GGSN+QVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 64  --------GGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]
BLAST of Spg021289 vs. NCBI nr
Match: XP_022971588.1 (uncharacterized protein LOC111470261 [Cucurbita maxima])

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-26
Identity = 79/119 (66.39%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 1   MEAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKN 60
           MEAE IVEHR SI APSIFLIVIAFQFL  WL++LKK                       
Sbjct: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKK----------------------- 60

Query: 61  VLYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                     GSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 61  ---------RGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 87

[Close]
BLAST of Spg021289 vs. NCBI nr
Match: XP_008448478.1 (PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 8.0e-26
Identity = 77/119 (64.71%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 1   MEAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKN 60
           MEAEGIVEH  SIAAP IF IVI FQFL +WLE+LKK                       
Sbjct: 3   MEAEGIVEHGSSIAAPFIFFIVIGFQFLARWLEHLKK----------------------- 62

Query: 61  VLYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                    GGSN+QVE+ELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 63  ---------GGSNSQVELELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]
BLAST of Spg021289 vs. ExPASy Swiss-Prot
Match: Q1H5D2 (Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-17
Identity = 57/118 (48.31%), Postives = 65/118 (55.08%), Query Frame = 0 

Query: 1   MEAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKN 60
           ME E ++E R  +AAP  F++V+ FQ L KWL+ LKK                       
Sbjct: 1   MEGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKK----------------------- 60

Query: 61  VLYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELA 119
                     GS N  E ELR  IKQLLREAS LSQP+TFAQAAKLRR AA KEKELA
Sbjct: 61  ---------KGSKNTRESELRTEIKQLLREASALSQPATFAQAAKLRRSAATKEKELA 86

[Close]
BLAST of Spg021289 vs. ExPASy TrEMBL
Match: A0A6J1L884 (uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 9.2e-28
Identity = 80/118 (67.80%), Postives = 83/118 (70.34%), Query Frame = 0 

Query: 2   EAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKNV 61
           EAEGIVEHR SIAAP IFLIVIAFQFL +WLE+LKK                        
Sbjct: 6   EAEGIVEHRSSIAAPCIFLIVIAFQFLARWLEHLKK------------------------ 65

Query: 62  LYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                   GGSN+QVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 66  --------GGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 91

[Close]
BLAST of Spg021289 vs. ExPASy TrEMBL
Match: A0A6J1E9M6 (uncharacterized protein LOC111431128 OS=Cucurbita moschata OX=3662 GN=LOC111431128 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 79/118 (66.95%), Postives = 83/118 (70.34%), Query Frame = 0 

Query: 2   EAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKNV 61
           EAEGIVEHR SIAAP IFL+VIAFQFL +WLE+LKK                        
Sbjct: 4   EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKK------------------------ 63

Query: 62  LYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                   GGSN+QVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 64  --------GGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]
BLAST of Spg021289 vs. ExPASy TrEMBL
Match: A0A6J1I7A9 (uncharacterized protein LOC111470261 OS=Cucurbita maxima OX=3661 GN=LOC111470261 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.7e-26
Identity = 79/119 (66.39%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 1   MEAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKN 60
           MEAE IVEHR SI APSIFLIVIAFQFL  WL++LKK                       
Sbjct: 1   MEAEEIVEHRNSIVAPSIFLIVIAFQFLAGWLDHLKK----------------------- 60

Query: 61  VLYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                     GSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 61  ---------RGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 87

[Close]
BLAST of Spg021289 vs. ExPASy TrEMBL
Match: A0A1S3BKE1 (uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.9e-26
Identity = 77/119 (64.71%), Postives = 81/119 (68.07%), Query Frame = 0 

Query: 1   MEAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKN 60
           MEAEGIVEH  SIAAP IF IVI FQFL +WLE+LKK                       
Sbjct: 3   MEAEGIVEHGSSIAAPFIFFIVIGFQFLARWLEHLKK----------------------- 62

Query: 61  VLYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                    GGSN+QVE+ELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 63  ---------GGSNSQVELELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 89

[Close]
BLAST of Spg021289 vs. ExPASy TrEMBL
Match: A0A0A0L4T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 8.7e-26
Identity = 77/119 (64.71%), Postives = 80/119 (67.23%), Query Frame = 0 

Query: 1   MEAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKN 60
           ME EGIVEHR SIAAP IF IVI FQFL KWLE+LKK                       
Sbjct: 1   MEPEGIVEHRSSIAAPFIFFIVIGFQFLAKWLEHLKK----------------------- 60

Query: 61  VLYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN 120
                     GSN+QVEMELRKSIKQLL+EASTLSQPSTFAQAAKLRRLAAAKEKELAN
Sbjct: 61  ---------RGSNSQVEMELRKSIKQLLKEASTLSQPSTFAQAAKLRRLAAAKEKELAN 87

[Close]
BLAST of Spg021289 vs. TAIR 10
Match: AT4G16444.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-18
Identity = 57/118 (48.31%), Postives = 65/118 (55.08%), Query Frame = 0 

Query: 1   MEAEGIVEHRRSIAAPSIFLIVIAFQFLGKWLENLKKLNFDVYLKFRAVVFQFSVDRLKN 60
           ME E ++E R  +AAP  F++V+ FQ L KWL+ LKK                       
Sbjct: 1   MEGEKLIEDRGFLAAPLTFVVVVVFQLLSKWLDQLKK----------------------- 60

Query: 61  VLYPTGLREGGSNNQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELA 119
                     GS N  E ELR  IKQLLREAS LSQP+TFAQAAKLRR AA KEKELA
Sbjct: 61  ---------KGSKNTRESELRTEIKQLLREASALSQPATFAQAAKLRRSAATKEKELA 86

The following BLAST results are available for this feature:
BLAST of Spg021289 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023007643.11.9e-2767.80uncharacterized protein LOC111500212 [Cucurbita maxima][more]
XP_022923433.12.5e-2766.95uncharacterized protein LOC111431128 [Cucurbita moschata] >KAG6577814.1 Guided e... [more]
XP_023552250.14.3e-2766.10uncharacterized protein LOC111809975 [Cucurbita pepo subsp. pepo][more]
XP_022971588.13.6e-2666.39uncharacterized protein LOC111470261 [Cucurbita maxima][more]
XP_008448478.18.0e-2664.71PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo][more]
BLAST of Spg021289 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1H5D22.4e-1748.31Protein GET1 OS=Arabidopsis thaliana OX=3702 GN=GET1 PE=1 SV=1[more]
BLAST of Spg021289 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1L8849.2e-2867.80uncharacterized protein LOC111500212 OS=Cucurbita maxima OX=3661 GN=LOC111500212... [more]
A0A6J1E9M61.2e-2766.95uncharacterized protein LOC111431128 OS=Cucurbita moschata OX=3662 GN=LOC1114311... [more]
A0A6J1I7A91.7e-2666.39uncharacterized protein LOC111470261 OS=Cucurbita maxima OX=3661 GN=LOC111470261... [more]
A0A1S3BKE13.9e-2664.71uncharacterized protein LOC103490650 OS=Cucumis melo OX=3656 GN=LOC103490650 PE=... [more]
A0A0A0L4T98.7e-2664.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002280 PE=3 SV=1[more]
BLAST of Spg021289 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16444.11.7e-1848.31FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..123
NoneNo IPR availablePANTHERPTHR1176030S/40S RIBOSOMAL PROTEIN S3coord: 46..118
NoneNo IPR availablePANTHERPTHR11760:SF44BNAC07G33680D PROTEINcoord: 46..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021289.1Spg021289.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016020 membrane
molecular_function GO:0005488 binding