Spg021236 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg021236
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-type domain-containing protein
Location	scaffold6: 48030585 .. 48031082 (+)
RNA-Seq Expression	Spg021236
Synteny	Spg021236

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACTTCGTCGGTGTCCGAGACAGACCGAGGCTCAAGCAGGCAACCCCGTCTCCTCGCGGTGGCGATTCGAGCCTTCGACTGAGGGTGAAGGAGGAGTCTGTGGCACTTGATGATTGTGTAGCTCTTGCGAGTCCTGGAAAGGCGTTGCAGGGCGAGAGATGTTGCGTGTGCTTGTCGAGTATGGGTCGGGATGGGGAGGAGGGGATTGAAACGAGTGTTCTTCCTTGCTTCCACGAGTTTCATAAGGTATGTGTCGATCGGTGGTTCGAGGAGTGTCGGAGAACTTGTCCGATATGTCGGTATTCGATGGAAGGTGGAGAGAATAGTCATAAGAATGGGAGTCAGATACTCACAGATGAGATGGTTATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGAGCACTTTTCGTTTGTTAGATCCTCCAAAAGCACTTCAAGCTTGGCAGTGCTTCCTTTTGA

mRNA sequence

ATGGTTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACTTCGTCGGTGTCCGAGACAGACCGAGGCTCAAGCAGGCAACCCCGTCTCCTCGCGGTGGCGATTCGAGCCTTCGACTGAGGGTGAAGGAGGAGTCTGTGGCACTTGATGATTGTGTAGCTCTTGCGAGTCCTGGAAAGGCGTTGCAGGGCGAGAGATGTTGCGTGTGCTTGTCGAGTATGGGTCGGGATGGGGAGGAGGGGATTGAAACGAGTGTTCTTCCTTGCTTCCACGAGTTTCATAAGATCCTCCAAAAGCACTTCAAGCTTGGCAGTGCTTCCTTTTGA

Coding sequence (CDS)

ATGGTTTTCAACAAGGTCTTCTTCTTCTTCTACAACAACTTCGTCGGTGTCCGAGACAGACCGAGGCTCAAGCAGGCAACCCCGTCTCCTCGCGGTGGCGATTCGAGCCTTCGACTGAGGGTGAAGGAGGAGTCTGTGGCACTTGATGATTGTGTAGCTCTTGCGAGTCCTGGAAAGGCGTTGCAGGGCGAGAGATGTTGCGTGTGCTTGTCGAGTATGGGTCGGGATGGGGAGGAGGGGATTGAAACGAGTGTTCTTCCTTGCTTCCACGAGTTTCATAAGATCCTCCAAAAGCACTTCAAGCTTGGCAGTGCTTCCTTTTGA

Protein sequence

MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKALQGERCCVCLSSMGRDGEEGIETSVLPCFHEFHKILQKHFKLGSASF

Homology

[Close]

BLAST of Spg021236 vs. NCBI nr
Match: KAG6577791.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-25
Identity = 65/97 (67.01%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCV-ALASPGK 60
          MVFNK+FFFFYNN +G R  P LKQATP PR  DSSLR       +  DDCV AL+SP K
Sbjct: 1  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLR------PMTPDDCVAALSSPEK 60

Query: 61 ALQGERCCVCLSSMG-RDGEEGIETSVLPCFHEFHKI 96
          AL+GE CCVCLS MG +D +EGI TSVLPC HEFHKI
Sbjct: 61 ALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKI 91

[Close]

BLAST of Spg021236 vs. NCBI nr
Match: KAG7015830.1 (Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 65/97 (67.01%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCV-ALASPGK 60
          MVFNK+FFFFYNN +G R  P LKQATP PR  DSSLR          DDCV AL+SP K
Sbjct: 1  MVFNKLFFFFYNNLIGFRTSPTLKQATPLPRSADSSLR------PTTPDDCVAALSSPEK 60

Query: 61 ALQGERCCVCLSSMG-RDGEEGIETSVLPCFHEFHKI 96
          AL+GE CCVCLS MG +D +EGI TSVLPC HEFHKI
Sbjct: 61 ALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKI 91

[Close]

BLAST of Spg021236 vs. NCBI nr
Match: XP_022145297.1 (E3 ubiquitin-protein ligase SDIR1-like [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKA 60
          MVFN+VFFFFY NF+G R RP+LKQ T  P GGDS+LR  V++ES  + DCV L+S GKA
Sbjct: 1  MVFNRVFFFFY-NFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDES-RIPDCVTLSSSGKA 60

Query: 61 LQGER-CCVCLSSMGRDGEEGIETSVLPCFHEFHKI 96
          L+GE  CCVCLSS+    EEGIETSVLPC HEFHK+
Sbjct: 61 LEGEMCCCVCLSSI----EEGIETSVLPCLHEFHKV 90

[Close]

BLAST of Spg021236 vs. NCBI nr
Match: XP_038906276.1 (E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 64/102 (62.75%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPG 60
          MVFNKVFFFFYNNF+G R R R KQATP P GG+ SLR       +  DDC  V L+SP 
Sbjct: 1  MVFNKVFFFFYNNFMGFRSRLRCKQATPLPHGGNLSLR------PITPDDCAIVTLSSPE 60

Query: 61 KALQGERCCVCLSSMG-----RDGEEGIETSVLPCFHEFHKI 96
          KAL+GE CCVCLSSMG     RD   G  TSVLPC HEFHK+
Sbjct: 61 KALEGETCCVCLSSMGNKDGDRDKGVGTSTSVLPCLHEFHKV 96

[Close]

BLAST of Spg021236 vs. NCBI nr
Match: KAA0052944.1 (E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa] >TYK11400.1 E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.5e-23
Identity = 65/103 (63.11%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRP-RLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASP 60
          MVFNKVFFFFYNNF+G R RP R KQATP P GG+SSLR       +  DDC  +AL+S 
Sbjct: 1  MVFNKVFFFFYNNFIGFRSRPTRFKQATPLPHGGNSSLR------PMPTDDCTIIALSSL 60

Query: 61 GKALQGERCCVCLSSMGR---DGEEGI--ETSVLPCFHEFHKI 96
           KAL+GE CCVCLSSMG    DG++G+   TSVLPC HEFHK+
Sbjct: 61 EKALEGETCCVCLSSMGNTDGDGDKGVGNGTSVLPCLHEFHKV 97

[Close]

BLAST of Spg021236 vs. ExPASy TrEMBL
Match: A0A0A0L4W7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26
Identity = 64/100 (64.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASPG 60
          M+FNKVFFFFYNN +G R RPR KQATP PR G+SSLR       +  DDC  +AL+S  
Sbjct: 1  MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLR------PLPTDDCTILALSSLE 60

Query: 61 KALQGERCCVCLSSMG---RDGEEGIETSVLPCFHEFHKI 96
          KAL+GE CCVCLSSMG   RDG++G+ TSVLPC HEFHK+
Sbjct: 61 KALEGETCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKV 94

[Close]

BLAST of Spg021236 vs. ExPASy TrEMBL
Match: A0A6J1CW69 (E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC111014786 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKA 60
          MVFN+VFFFFY NF+G R RP+LKQ T  P GGDS+LR  V++ES  + DCV L+S GKA
Sbjct: 1  MVFNRVFFFFY-NFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDES-RIPDCVTLSSSGKA 60

Query: 61 LQGER-CCVCLSSMGRDGEEGIETSVLPCFHEFHKI 96
          L+GE  CCVCLSS+    EEGIETSVLPC HEFHK+
Sbjct: 61 LEGEMCCCVCLSSI----EEGIETSVLPCLHEFHKV 90

[Close]

BLAST of Spg021236 vs. ExPASy TrEMBL
Match: A0A5D3CJ45 (E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00530 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.0e-24
Identity = 65/103 (63.11%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRP-RLKQATPSPRGGDSSLRLRVKEESVALDDC--VALASP 60
          MVFNKVFFFFYNNF+G R RP R KQATP P GG+SSLR       +  DDC  +AL+S 
Sbjct: 1  MVFNKVFFFFYNNFIGFRSRPTRFKQATPLPHGGNSSLR------PMPTDDCTIIALSSL 60

Query: 61 GKALQGERCCVCLSSMGR---DGEEGI--ETSVLPCFHEFHKI 96
           KAL+GE CCVCLSSMG    DG++G+   TSVLPC HEFHK+
Sbjct: 61 EKALEGETCCVCLSSMGNTDGDGDKGVGNGTSVLPCLHEFHKV 97

[Close]

BLAST of Spg021236 vs. ExPASy TrEMBL
Match: W9SMW3 (E3 ubiquitin-protein ligase Arkadia OS=Morus notabilis OX=981085 GN=L484_026635 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.2e-08
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKA 60
          MV NK F     NF+ ++ +PRLK+A  S    + ++ L+++E    LD+  A +S G  
Sbjct: 1  MVLNK-FLSVICNFISLKGQPRLKEAPASWEVIEPNVELKLEE---GLDESAAESSTG-- 60

Query: 61 LQGERCCVCLSSMGRDGEEGIETSVLPCFHEFHK 95
           +GE CCVCLS++    EEG ETS+LPC H+FHK
Sbjct: 61 AEGEFCCVCLSTL---EEEGEETSLLPCQHKFHK 85

[Close]

BLAST of Spg021236 vs. ExPASy TrEMBL
Match: A0A803PEM7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 1  MVFNKVFFFFYNNFVGVRDRPRLKQATPSPRGGDSSLRLRVKEESVALDDCVALASPGKA 60
          MVFN +    YNNF+ ++ +PR+K+   S    + ++  +V E   AL +    +  G  
Sbjct: 1  MVFNSLLSTLYNNFMSLKPQPRMKEPPASCDVDEVNVEHKVDE---ALAESATDSITG-- 60

Query: 61 LQGERCCVCLSSMGRDGEEGIETSVLPCFHEFHK 95
           +GE CCVCLS +     EG ETS+LPC HEFHK
Sbjct: 61 -EGEFCCVCLSRL-----EGEETSILPCMHEFHK 83

The following BLAST results are available for this feature:

BLAST of Spg021236 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577791.1	7.7e-25	67.01	Protein goliath, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7015830.1	1.0e-24	67.01	Protein goliath, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022145297.1	5.0e-24	66.67	E3 ubiquitin-protein ligase SDIR1-like [Momordica charantia]	[more]
XP_038906276.1	1.5e-23	62.75	E3 ubiquitin-protein ligase RNF167-like [Benincasa hispida]	[more]
KAA0052944.1	1.5e-23	63.11	E3 ubiquitin-protein ligase RNF13 [Cucumis melo var. makuwa] >TYK11400.1 E3 ubiq...	[more]

BLAST of Spg021236 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg021236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4W7	3.4e-26	64.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 P...	[more]
A0A6J1CW69	2.4e-24	66.67	E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5D3CJ45	7.0e-24	63.11	E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
W9SMW3	9.2e-08	43.62	E3 ubiquitin-protein ligase Arkadia OS=Morus notabilis OX=981085 GN=L484_026635 ...	[more]
A0A803PEM7	2.1e-07	40.43	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Spg021236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 59..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg021236.1	Spg021236.1	mRNA