Spg021076 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg021076
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA polymerase II C-terminal domain phosphatase-like
Locationscaffold9: 3484577 .. 3489068 (-)
RNA-Seq ExpressionSpg021076
SyntenySpg021076
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAAAGGAAAGAGAAAAGCCCCAACAGCTCCACGCCAGTTGTTTTCTTCTTCACGCCGTCTCATCCTCCGTTTCAGCCGTTCACTGGTGCCGCCGGCTCTCTCCCGTTCACTGCTGCCGCCGCCATCATTCTTTCTTTCAATCGTGCCTCCGCAGCCTCCCTTTAGCAGTTTTACACTGATTTTGTACTCCCTTGTTGGTATTCTCCCAATCTGTCTTTCTTCTCACTTGAAAAATGTAACAACCCTTATTTCAAAAAAGAAAGGAAAACCCTCCCCCCCGATTTCCCTCCCTCTCTCTAATCTCTCTTTCTCCTTGGTCACGAATAGGTAGCGCCGCCACTGCCTCCGATCAAACTTCGGCGTCCACAGAGAGCGTCGGGAGGACTTTTCCCTCCCATCTCCAGCGTCGTGTGCGTGCGTCCGACGTAGGCAGCAGCGATAGCAAGTTCTTCCGGTGTGGGTTTTGTTTCCGTGTGTTTCCGGCGATCCGAGCGGCTCCGACGTTATTTCCTCTCAACCAACAGAGGGTTGTGAGCTCGCGCGGGGTGCTTTTTCCGGCAGTATCAGAGCGCGAACAGTAGCGTATTGGCGTGTTTCTGGCGGCACCTTCGCAGACAGCAGCTTTACTTCGCGATTTCCGGCGGTTTGAGCTGTGGGTCTTCCCCTCTGGCGAGTTTGGACGTTTATTAGGCACCACCAGCGAGTGGGTAAGTGAGATTTAAAGTAATTTTTGGCCGATTATGCGTTCTAAGTGAATAGCCATTGAGTTTGATTTGAAAATTTAATGTATCCATAGATTTGGAGGTCGTATCGTGGAAATTGGATCGAATTAGAATCCAACCAGCAAGCATGAAGTTTAATTGGGTGAGCTTTTCGATTTATTAGGTTGCTTTAAATTAGTGGACTTTTGGTTTAATATCCAATGTTAAAGTCTATTGATTTTAGAAATTTTTGTGTAGATCTGAAATTGCTAATTGTGGTCGAGGTCGACATCAATTCTGAGTTAATTGATTTTGTATAGGAAGCAATTAGCCGAGGTAAGTAACCTTACCACTGGATAGTCTTGGCTAGGCTGGACTACTTATTATTTTTTAATTATTTTCTTTTTGGGTGGATATTTCAGATGAGCATTGTGACTAATTCTCCAGCTCACTCGTCGAGCAGTGACGATTTTGCTGCATTTCTTGATGTAGCTCTAGATTCCCATTCCTCTGACTCATCGCCCGATGAAAAGGCTGAGGGTGACAATAATGTTGTTGAAAGTGAGAGGTGCAAATAATTTTTTTAAATTAATAAATTTCCATTGATCTTTTAAGTTAATAATGTCTGAAGACAGTGGTTTCGGGTTTTTTGGAATTGTAATTTTTTGGTTAATCTAATGTGTTCAATACTTCAATGTAGAATTAAGTGGGAAGTGTTTTATAGTTGCCTGGCTCTCTTTCGAATCCTCATATGGGGAAAAATAGTACAATGGGAGTTATTATGATTAAGAGTATTGGGTTCATTTTTTCAATTTCTGGACCGTCTTTTTTAGAGAATAGATTGTATTTGGTACTGTATGGCATTCCAAAATGCTTGTTGAAATAGGATTTCATGAATGGTTTAACATTACAGATTTCCCATCTGACTTTCTTGTGCTAGTCTTATATGTAGATTCTAAGCTTCTAATTAAAAACTCAGTTTTTTTTAAAAGAAAAAATTTGAAGAAACCAAATTTCTTAGAAGAATGAAAGAATAAGAGCGAACTTATTGGGCCATGGAAAAAATAAAGGGTTTAGAGGGAATAGGTTCAATCCATGATGGCCACCTAAGAAGCACAAACACTTTAGTTTGGCTAGTGTGTCCGTGTCCGACACTTGGACACTTCGACACTTGTTGGACACGTATCGAACACTTGTTAGCACAATTGGTATGTGGCAAAGTTGTACAAAGTCAATATAGGTCCATATCGAACACTTGTTAAGTATACTAAATAGACACAATAATAAATGACAAAATAATAAATTTTAAGAGTGAAATACATTAAGCTCTTTTTTTAAGCATGCAAATACATAAGTTTATTAATTTTGAATTTAAATGTATATTTTATTAAACGTATTTGTGTCGTGTTTGTGTCCTAGATTTTAAAAAGATGACGTGTCACCATGTTCGTGTCATGTCGTGTCCTGTGTTTGTATCCATGCTTCTTAGATGACCACCTTCCTAGGATTTAATATCCTATGTGTTTCCTGGCAACCAAATGTAGTAGGGTCAGACTGCTGTCCCTTGAGATTAGTCGAAGTGCACACAAGCTGGTTTGGACACTCACAGATATCAAAAAAAGAAAAAAAAAAGAAGAAGAGCAAACTGCAAAGCTGCACAAAAGAAGAAGAATATAAAATCAAGGACTAAACATTGATAACAGTGGGTTTAGTCATTTAGTTTCACTTTCATCTTATTATTTTCTTTTATAGATATCCCAAGTGGTCTAGTTTATGAAAGATCAGTTACCACATACGTAATTATTATTTTATATTAAAAGTCTAAAACTATGGTAAACAGGATTCTGCTCATAACTTCTCATTATCCAATGAGTGCCATTTGTGATTTCTTTGTTTGTAATTTGTATTCTTTTTCCTTTTGCATGAATAACAGCATTGAGTTGTGGCAAGTGGCGACTATCATTTCTGCACATAATAACGAGGGTTTGTAGGATTGGTTATAAGTTATAACCATATAACTAATTTGTGGTAGTTGTAGTTCATCTTCATTTTATCAATTTAACATGTCAAATATTTTTCATTCAATTCATTTATTTTTTTAGGATAAAACGTCGTAAAGTGGAGAAGCTGGAAAACCCAGAGGAGGACATTCTGTATGGAGTTGAAGGGCAAAGTTCAGGTAAATCAAATTGTTCCTACTTCCTACTAACCCCTTTTGTTGTCCCTCTTTTACTGGCTCTACTCTATACTTCCAATGTAGCCAATTTGTGGCTGCCACCTGTACTATACTTAACTATTTCCTCACTTCTTAGACAGCTAACTAAATGATGTATTTGCTGTGTCAGTCCTTTTTTCCCACCCTCTCTGTATATTTGTAGAGCGTTTCACTTCTGACTCTTCTGTTGCATATCGTGTTTTTGTTGGTTGCCTCCTCTTCCCTTCTTGTACGTGAATCTGATTGGTGGTTTGGCACCCTTTTTTTATCCCTCTTTGATTTGAATTGTATGAGCTTCTCTAAGAACCATATCAAGTTGGCTCCAAATGAGCTACATATATAATATAAACACCTACTTTTTTGTTTTTTGGGTAAGAAACTATTCCATAGAAAATATGAAATTACCAAGGCAGGAGAAGGAAAGCTGCATCCCTGATAACTAAAAGTGATACATATTCTCTGGCTTTATCTTACCATACGACGGGAGTTGTTCTTATGGTAGCAGTGACTGATCTTTGGTCTAAATGAAAATAGTCAAATTTAGATTCTTGGTTATTCAAGAACTAGGAATTACAGGGATGCTAGATGGATATGCATCTCAAATTTTGTGGCATCTGAATTTATGAACCATTTCAGTCCAGCAGTCCTCTGCTCACCATATATCCCTTATTTTGGTTCCTTTCTTCCTCTAGTATTGTGTCCTAATCAGTTCTGTGTAATTGTAACTTATGAACTTGAAATATAGAGGCCTTCGTGTTAAAGAAAGTATTTGACTACTTGTATCTCTGCATTGGGTTTTCTCTATTTTCTGAATTCTGCTGTTATCAATGCAGAAGTATTATCAAAGCAGCAACTATGCAGTCATCCTGGTTCATTTGGAAATATGTGTATCGTCTGTGGGCAGAGGTTGGATGAGGAAGCTGGCGTGACATTTGGGTATATACATAAGGTATATTTTCTTTACATGGATGTGTGATTATCTTCTATTCTTTGTTACGTTACAATGTATATAATGCTTGTAGTGAGGGTTTGGAAGGAACTCAAAAGGCCTTGGAGTTTACAGGATAGGCACCATTTAGAAGAGGAATTAGAAATGTTGTCAAGAGTTTTTTTTTTTATTATTTTTTTTTGGATAAGAAACAATTTTATTGATGTATGAAAATACAAAAAAAGGGGGAAGGAGAAAGCCCCGAACCAATGGAGTTACAATAAACATCTCCAATTAGTCAAAAGTGATCTTAAACTATAAGAGGAAAAAAGAGAATTCAATTTACACCAAGATAATGCATGGAAAAGAACATTGCCAAAAAGAACTAGATATGGCTTTTTCTTAGATTCAAAAGTTCGATGGTTTCTTTCTATCCAAATCGACCATAAGAATGCCCGAATCATATTCTGCGAAAGAAGCTCTTTTGTGCTTTAAAATGGATGATCCAAAAGTAGAGATGATAAAAGCATGAGTGGATCCTTTGGAAGAGCGATCTCCCAATTAAAAGCTAATCTCAACTCGTTCCAAAAATTTTGAGCTACCGGACAACAAATGAAAATATGAGATTGAGTCTCCAGATCGG

mRNA sequence

ATGAATAAAGGAAAGAGAAAAGCCCCAACAGCTCCACGCCAGTTGTTTTCTTCTTCACGCCGTCTCATCCTCCGTTTCAGCCGTTCACTGGTGCCGCCGGCTCTCTCCCGTTCACTGCTGCCGCCGCCATCATTCTTTCTTTCAATCGTGCCTCCGCAGCCTCCCTTTAGCAGTTTTACACTGATTTTGTACTCCCTTGTTGGTAGCGCCGCCACTGCCTCCGATCAAACTTCGGCGTCCACAGAGAGCGTCGGGAGGACTTTTCCCTCCCATCTCCAGCGTCGTGTGCGTGCGTCCGACGTAGGCAGCAGCGATAGCAAGTTCTTCCGGTGTGGGTTTTGTTTCCGTGTGTTTCCGGCGATCCGAGCGGCTCCGACGTTATTTCCTCTCAACCAACAGAGGGTTGTGAGCTCGCGCGGGGTGCTTTTTCCGGCAGCACCACCAGCGAGTGGGAAGCAATTAGCCGAGATGAGCATTGTGACTAATTCTCCAGCTCACTCGTCGAGCAGTGACGATTTTGCTGCATTTCTTGATGTAGCTCTAGATTCCCATTCCTCTGACTCATCGCCCGATGAAAAGGCTGAGGGTGACAATAATGTTGTTGAAAGTGAGAGGATAAAACGTCGTAAAGTGGAGAAGCTGGAAAACCCAGAGGAGGACATTCTGTATGGAGTTGAAGGGCAAAGTTCAGAAGTATTATCAAAGCAGCAACTATGCAGTCATCCTGGTTCATTTGGAAATATGTGTATCGTCTGTGGGCAGAGGTTGGATGAGGAAGCTGGCGTGACATTTGGGTATATACATAAGGTATATTTTCTTTACATGGATGTGTGA

Coding sequence (CDS)

ATGAATAAAGGAAAGAGAAAAGCCCCAACAGCTCCACGCCAGTTGTTTTCTTCTTCACGCCGTCTCATCCTCCGTTTCAGCCGTTCACTGGTGCCGCCGGCTCTCTCCCGTTCACTGCTGCCGCCGCCATCATTCTTTCTTTCAATCGTGCCTCCGCAGCCTCCCTTTAGCAGTTTTACACTGATTTTGTACTCCCTTGTTGGTAGCGCCGCCACTGCCTCCGATCAAACTTCGGCGTCCACAGAGAGCGTCGGGAGGACTTTTCCCTCCCATCTCCAGCGTCGTGTGCGTGCGTCCGACGTAGGCAGCAGCGATAGCAAGTTCTTCCGGTGTGGGTTTTGTTTCCGTGTGTTTCCGGCGATCCGAGCGGCTCCGACGTTATTTCCTCTCAACCAACAGAGGGTTGTGAGCTCGCGCGGGGTGCTTTTTCCGGCAGCACCACCAGCGAGTGGGAAGCAATTAGCCGAGATGAGCATTGTGACTAATTCTCCAGCTCACTCGTCGAGCAGTGACGATTTTGCTGCATTTCTTGATGTAGCTCTAGATTCCCATTCCTCTGACTCATCGCCCGATGAAAAGGCTGAGGGTGACAATAATGTTGTTGAAAGTGAGAGGATAAAACGTCGTAAAGTGGAGAAGCTGGAAAACCCAGAGGAGGACATTCTGTATGGAGTTGAAGGGCAAAGTTCAGAAGTATTATCAAAGCAGCAACTATGCAGTCATCCTGGTTCATTTGGAAATATGTGTATCGTCTGTGGGCAGAGGTTGGATGAGGAAGCTGGCGTGACATTTGGGTATATACATAAGGTATATTTTCTTTACATGGATGTGTGA

Protein sequence

MNKGKRKAPTAPRQLFSSSRRLILRFSRSLVPPALSRSLLPPPSFFLSIVPPQPPFSSFTLILYSLVGSAATASDQTSASTESVGRTFPSHLQRRVRASDVGSSDSKFFRCGFCFRVFPAIRAAPTLFPLNQQRVVSSRGVLFPAAPPASGKQLAEMSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHKVYFLYMDV
Homology
[Close]
BLAST of Spg021076 vs. NCBI nr
Match: XP_038890381.1 (RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Benincasa hispida] >XP_038890382.1 RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-46
Identity = 102/113 (90.27%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLEN 216
           MS+ TNSPAHSSSSDDFAAFLDVALDSHSSDSSP EKAEGDNN  ESERIKRRKVEKLEN
Sbjct: 1   MSLATNSPAHSSSSDDFAAFLDVALDSHSSDSSPYEKAEGDNN-AESERIKRRKVEKLEN 60

Query: 217 PEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
            EEDILYGVE QSSE +SKQQLCSHPGSFGNMCI+CGQRLDEE+GVTFGYIHK
Sbjct: 61  SEEDILYGVEEQSSEAISKQQLCSHPGSFGNMCIICGQRLDEESGVTFGYIHK 112

[Close]
BLAST of Spg021076 vs. NCBI nr
Match: KAG7037160.1 (RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.5 bits (493), Expect = 1.2e-45
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLEN 216
           MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN
Sbjct: 20  MSLVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPNEKAEGHNN-VETERIKRHKVEKLEN 79

Query: 217 PEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
             EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRLDEE+GVTFGYIHK
Sbjct: 80  SGEDILYGVEEHSSEVLSKQQLCSHPGSFGNMCIICGQRLDEESGVTFGYIHK 131

[Close]
BLAST of Spg021076 vs. NCBI nr
Match: XP_023525838.1 (RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.5 bits (493), Expect = 1.2e-45
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLEN 216
           MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN
Sbjct: 1   MSLVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPNEKAEGHNN-VETERIKRHKVEKLEN 60

Query: 217 PEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
             EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRLDEE+GVTFGYIHK
Sbjct: 61  SGEDILYGVEEHSSEVLSKQQLCSHPGSFGNMCIICGQRLDEESGVTFGYIHK 112

[Close]
BLAST of Spg021076 vs. NCBI nr
Match: KAG6607512.1 (RNA polymerase II C-terminal domain phosphatase-like 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.5 bits (493), Expect = 1.2e-45
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLEN 216
           MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN
Sbjct: 283 MSLVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPNEKAEGHNN-VETERIKRHKVEKLEN 342

Query: 217 PEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
             EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRLDEE+GVTFGYIHK
Sbjct: 343 SGEDILYGVEEHSSEVLSKQQLCSHPGSFGNMCIICGQRLDEESGVTFGYIHK 394

[Close]
BLAST of Spg021076 vs. NCBI nr
Match: XP_022133134.1 (RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Momordica charantia])

HSP 1 Score: 193.7 bits (491), Expect = 2.1e-45
Identity = 102/116 (87.93%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL-- 216
           MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER+KRRKVE+L  
Sbjct: 1   MSLVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPEEKAEGDNN-VESERMKRRKVEELEG 60

Query: 217 -ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
            E P+EDI YGVE QSSEVLSKQQLCSHPGSFGNMCI+CGQRLDEE+GVTFGYIHK
Sbjct: 61  SEEPQEDISYGVEEQSSEVLSKQQLCSHPGSFGNMCIMCGQRLDEESGVTFGYIHK 115

[Close]
BLAST of Spg021076 vs. ExPASy Swiss-Prot
Match: Q00IB6 (RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana OX=3702 GN=CPL4 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.1e-16
Identity = 58/115 (50.43%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 157 MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKL 216
           MS+ ++SP H SSSSDD AAFLD  LDS S  SS P E+ E +++V     +KR+K+E L
Sbjct: 1   MSVASDSPVHSSSSSDDLAAFLDAELDSASDASSGPSEEEEAEDDV--ESGLKRQKLEHL 60

Query: 217 ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
           E               E  S +  C HPGSFGNMC VCGQ+L EE GV+F YIHK
Sbjct: 61  E---------------EASSSKGECEHPGSFGNMCFVCGQKL-EETGVSFRYIHK 97

[Close]
BLAST of Spg021076 vs. ExPASy TrEMBL
Match: A0A6J1BUF9 (RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3673 GN=LOC111005808 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 9.9e-46
Identity = 102/116 (87.93%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL-- 216
           MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER+KRRKVE+L  
Sbjct: 1   MSLVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPEEKAEGDNN-VESERMKRRKVEELEG 60

Query: 217 -ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
            E P+EDI YGVE QSSEVLSKQQLCSHPGSFGNMCI+CGQRLDEE+GVTFGYIHK
Sbjct: 61  SEEPQEDISYGVEEQSSEVLSKQQLCSHPGSFGNMCIMCGQRLDEESGVTFGYIHK 115

[Close]
BLAST of Spg021076 vs. ExPASy TrEMBL
Match: A0A6J1BV42 (RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3673 GN=LOC111005808 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 9.9e-46
Identity = 102/116 (87.93%), Postives = 109/116 (93.97%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL-- 216
           MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESER+KRRKVE+L  
Sbjct: 1   MSLVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPEEKAEGDNN-VESERMKRRKVEELEG 60

Query: 217 -ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
            E P+EDI YGVE QSSEVLSKQQLCSHPGSFGNMCI+CGQRLDEE+GVTFGYIHK
Sbjct: 61  SEEPQEDISYGVEEQSSEVLSKQQLCSHPGSFGNMCIMCGQRLDEESGVTFGYIHK 115

[Close]
BLAST of Spg021076 vs. ExPASy TrEMBL
Match: A0A6J1ID30 (RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita maxima OX=3661 GN=LOC111471991 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-45
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLEN 216
           MS+VTNSPAHSSSSDDFAAFLDVALDSHSSDS P+EKAEG NN VE+ERIKR KVEKLEN
Sbjct: 1   MSLVTNSPAHSSSSDDFAAFLDVALDSHSSDSLPNEKAEGHNN-VETERIKRHKVEKLEN 60

Query: 217 PEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
             EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRLDEE+GVTFGYIHK
Sbjct: 61  SGEDILYGVEEHSSEVLSKQQLCSHPGSFGNMCIICGQRLDEESGVTFGYIHK 112

[Close]
BLAST of Spg021076 vs. ExPASy TrEMBL
Match: A0A6J1GC38 (RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita moschata OX=3662 GN=LOC111452801 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.4e-45
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKLEN 216
           MS+VTNS AHSSSSDDFAAFLDVALDSHSSDSSP+EKAEG NN VE+ERIKR KVEKLEN
Sbjct: 1   MSLVTNSLAHSSSSDDFAAFLDVALDSHSSDSSPNEKAEGHNN-VETERIKRHKVEKLEN 60

Query: 217 PEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
             EDILYGVE  SSEVLSKQQLCSHPGSFGNMCI+CGQRLDEE+GVTFGYIHK
Sbjct: 61  SGEDILYGVEEHSSEVLSKQQLCSHPGSFGNMCIICGQRLDEESGVTFGYIHK 112

[Close]
BLAST of Spg021076 vs. ExPASy TrEMBL
Match: A0A6J1CJQ5 (RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3673 GN=LOC111012040 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.9e-44
Identity = 100/116 (86.21%), Postives = 107/116 (92.24%), Query Frame = 0 

Query: 157 MSIVTNSPAHSSSSDDFAAFLDVALDSHSSDSSPDEKAEGDNNVVESERIKRRKVEKL-- 216
           MS+VT+SPAHSSSSDDFAAFLDVALDSHSSDSSP+EKAEGDNN VESERIKRRKVEKL  
Sbjct: 1   MSLVTDSPAHSSSSDDFAAFLDVALDSHSSDSSPEEKAEGDNN-VESERIKRRKVEKLEG 60

Query: 217 -ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
            E P+EDI+Y VE QSSEVLSKQQLC HPGSFGNMCI+CGQRLD E+GVTFGYIHK
Sbjct: 61  SEEPQEDIMYRVEEQSSEVLSKQQLCGHPGSFGNMCIICGQRLDGESGVTFGYIHK 115

[Close]
BLAST of Spg021076 vs. TAIR 10
Match: AT5G58003.1 (C-terminal domain phosphatase-like 4 )

HSP 1 Score: 87.8 bits (216), Expect = 1.5e-17
Identity = 58/115 (50.43%), Postives = 71/115 (61.74%), Query Frame = 0 

Query: 157 MSIVTNSPAH-SSSSDDFAAFLDVALDSHSSDSS-PDEKAEGDNNVVESERIKRRKVEKL 216
           MS+ ++SP H SSSSDD AAFLD  LDS S  SS P E+ E +++V     +KR+K+E L
Sbjct: 1   MSVASDSPVHSSSSSDDLAAFLDAELDSASDASSGPSEEEEAEDDV--ESGLKRQKLEHL 60

Query: 217 ENPEEDILYGVEGQSSEVLSKQQLCSHPGSFGNMCIVCGQRLDEEAGVTFGYIHK 270
           E               E  S +  C HPGSFGNMC VCGQ+L EE GV+F YIHK
Sbjct: 61  E---------------EASSSKGECEHPGSFGNMCFVCGQKL-EETGVSFRYIHK 97

The following BLAST results are available for this feature:
BLAST of Spg021076 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038890381.11.1e-4690.27RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Benincasa his... [more]
KAG7037160.11.2e-4589.38RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita argyrosperma s... [more]
XP_023525838.11.2e-4589.38RNA polymerase II C-terminal domain phosphatase-like 4 [Cucurbita pepo subsp. pe... [more]
KAG6607512.11.2e-4589.38RNA polymerase II C-terminal domain phosphatase-like 4, partial [Cucurbita argyr... [more]
XP_022133134.12.1e-4587.93RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1 [Momordica cha... [more]
BLAST of Spg021076 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q00IB62.1e-1650.43RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana O... [more]
BLAST of Spg021076 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BUF99.9e-4687.93RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3... [more]
A0A6J1BV429.9e-4687.93RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3... [more]
A0A6J1ID302.9e-4588.50RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita maxima OX=3661... [more]
A0A6J1GC388.4e-4588.50RNA polymerase II C-terminal domain phosphatase-like OS=Cucurbita moschata OX=36... [more]
A0A6J1CJQ51.9e-4486.21RNA polymerase II C-terminal domain phosphatase-like OS=Momordica charantia OX=3... [more]
BLAST of Spg021076 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58003.11.5e-1750.43C-terminal domain phosphatase-like 4 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23081:SF28BNAC03G12630D PROTEINcoord: 158..270
IPR039189CTD phosphatase Fcp1PANTHERPTHR23081RNA POLYMERASE II CTD PHOSPHATASEcoord: 158..270

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg021076.1Spg021076.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain
cellular_component GO:0005634 nucleus
molecular_function GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity