Spg020985 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020985
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionGeranylgeranyl transferase type-2 subunit beta
Locationscaffold9: 563663 .. 568475 (+)
RNA-Seq ExpressionSpg020985
SyntenySpg020985
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGGCGGGATCCCTTTGTTCAAGCCCCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAGGAGTGAATTCCTTCTTGCACGACTATGTCCCCAGCTATCTACCCGTTCCTATCCCTGAAATGGGAGGCTTATTGAGTCGGCGATACTGAGCCACTCTCACCTATGCAAATCTAAGGATAAGCCCGAATAAACAGGAGTTCATAGTTAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCACATGAAATAGTCAGTCTCGTCAGTAAACGGTGTTATAAAGCGAGAGTGACTTATTTCTCGGTCCTGGTCTTATGCAAACTCATTGCATAGGACGCCCCCACTCACATGTCTCTACATGGACGATTTAGGATCACATCGTCTATACCATCTATAAAGTGGGTCGCGTCTCATAGTGTCCAGAATAAGGTACCCAACCCTATCCCTATACTATAGACCGTTTTGGCTATTACTTAAGCTTGATCCACTTTTATGTCTCTACATAAAGCTCAAGTGTTCATCCTATAGCCATGGATCTTAGTTTATTGGATTTGGGTTATTATATGTGCAATTTACTTTATTCAGTAATAACTTTACTGATTTAATCTCGATAACGCCTTTATCGAATAAGTATATAATTCGTTTAACATTCACTATCTACGAGTTTTAGGACACCAATCCCAACATTGACTACGTCTTAGGGCCTCAGGTAGACTTATTAAATTTCTTTAGTCTTACATAGCTAGAGTGTGTTCCGTCCCCATCTCAGGACTGATAAAACTTAGTTACCAGGCACGTTTCACGTGTGTTCTATTAGTTGACTGTTAGAGCTCAGTTTCAGGCACGCTAGCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGCTTATGATCAGGCACGTTGTTCGTGCGCCAGTTGGCACCAGGCATGTTTACATGCGTCAGTTGCTCCACCGTATTTTTATTTTTCATTCAGGGGTGTTGTGTTGGGATAGGTGTAGTTCTGCTAGAGGTGGCCAGCTAGTCTCTAGTTTACTTACCTTAACCGACTGACCCACACAACACTCTAGTTGGCACAGGTTGGGGATAGGTCAACACCCTAGACAGAGCATGATTATGTGATCAGTTTGGCCCTAGGGTTAGAAACCCGAATGTTAAATTCAGTTAGGTCCCTATGACGCTAAGACCCAGGAATTCAGGAATTCAGGAAATTCAGTTTCAAGCTAATAGATCCCAAGTTCAGTTTCAGCTCTTAAGTGGCTACTTACTGAGTATATTCGTATATACTCACCCATGTTATTTGTCTTTCCTTTTCAGGTGGTACTTGAGGGCGCTGGCGATAGGCGAGAGTCGTGGCTTGGCTGGCTATGGGACTACAGCTGCAAATTTTGTCATCTTCCTTAGACATTCAGTTCTTTCCTTTTTAATATCAGTTCCATGTGGAACCGTAGTTTTTAAACAATTGTTTTTGTTTCATTCCGGACTCATTCAATTACTTTCATTTCATTGTTTGACTGAGGAATGTATTCACGTTTTGGGCCCTATTTTAATTAAATGAAAAATATCGTTATTTTCGCATTAAAGTTTTACAAAGTTTTCCGTACTCATACATGTAGTAGCAACCCCTTTGTACGTTTTTATTCCCTCTCTAGTCGGGTCGTTACAAGCATCGGCAGCTAGCTCCACGCCACTCGGCACGTCGCTCGATCGAGCAGCCGTGCGCTCGTGGCGCCTCGACTCCCCAACTCAAGCACACGCCTCGCAGCACGTCACCATTGCCGATCCCACCCCACAACCGATGCAACGCCCGAGGTCCAAGAATGCCCACCGTCGATGGCAGTGCAGCTCCCTTGGACCTCCGGCACATGCCTCGGGGCACAAGCCCAAGGCGACATGCAACATCGCAACATCCTGCACCCAACGAGGTTCATGTCGTGCGTCGAGGCACCCGATCCCACCCCACCATGCACGTTCCGCCGCCACGTCGTCTGCCCTCCGCGAGGAGCCCCGAGGCTGGCACGCAGCACCGCAACATCCCACACCCGACGAGGTTCATGCCGCACGCCCAAAGGCATCCGACCCCGCCCCATCGTGCACGTTCCGCCGCCGTGCCGCCCGCCCTCCCCGGGCCTCCGGGCGGATGCCCGAGGACTGCAAGCAACACCGCAACATCCCACGCCCGACAAGGTTCATGCCGCACGCCCGAAGGCACCCGACCCCACCCCACAGTGCACATTCAGCCACCGCGCCGCCCGCCCTCCTCGGACCTCCGACCGCCACGCCCACGCCCCAAGCATATGCCCATGTACGGCGCATTGTGCTTGGGGCGTGGGCGTGGCGACATAGGGGTACCCATGCAGGCAGGTCGCCCCCCTTTATTATGCTTGTGTGTCGGTTTACACTTCATTGTAGCTAATTAGTGAAAATATGTACGAATTAAGACAAGTGTTTGCATTTTACATTCATATAAGTGAATGAAGATCACAAAATTTGAATAATAATAAAACTTTAAGGTGCTGTTTTCAAACTTCAAAAACATGAAACGTTGAAGAAAAATATTGTGTAATCCAATTTGAGGGCCAAAACGGCCGTATTTTGGATTGAATGGTCGGACAAGCCGCCATGGCGGCTTGCCAGCATGTAGATCTCGAAAAGTTACATGGAATAAAAAAAAAATTCATCCAATTTGGTCAACCGAGCTAAAAGTTATGGCTTTTCAAAGTTTCAACTTAATTCCAACTAGTTTTTGGAGGTATTAGAGGTACAAATCCGTTAACAATTTACTCATTTTGACATACAGTGGAACTCGCTCTCGTTCGTTCTCCCCTGCGTTCATCTTTGCATATCTTTAGCTGGACTCCTACCAGGTTTCAACCCATTCTTTGACTCGATTCCGTTATTTCTTGAAATTGATCACTGTCACTGAGATTATAATTTCCCTGTTCGTCGTGATTCTTGTTTATCAATTCAAAATCTTCTATAGGTTAGTTACTCTCATAGTCGAGTAAATTGAAGGTTAAGTCGAATTCCTTCTCGATCAAGGAGGACATATACATTTAGTTTTTTCCCAATCATTGTTTTCTTGTTGTTCGTGAGATTCTGTAAACTGAACATTTACTGATCCTTACAAAATTCGAGTATTCGTTATGTTTATTGAGTTTTACTTTCTTAGCATCGATTTCCATGAATTAATAAGCTAATTATGCCAGGACTTGACAGATGGGGGAACTGGCAACTGAGAAGCATGTTAAGTACATCATATCTGTTGAAAAGGTGCGTTTTCCATTCATAGATCTCATGCTTTTTAGCTCATTGCTTGGTTATCGTGTTCTTCTATGTGCTTTTAAAGTACATTTCTATCTGTTTATTCTATGTATCCCATCTTAGGTCGTTTTATGCACAGAAAAAGGATGATTTTCAATCCGTGGTGATGGAACATCTAAGAATGAATGGTGCTTACTGGGGTCTGACTGCACTGGATATTCTTGGAAAGCTCAACACTGTGGATGCTGATGAGGTTGTTTCATGGGTCATGTCATGCCAACACGAGTCAGGTAAGTTCCCCACAAAATTTACCGTCTTAGTTTGTGCCTCTGGGTGATGTTTGTCTTGAACAAAGTGGCTATTCAATTGCATCTTCGTTGCATTGAATTGAGGATTGGTTACCTGATTCTTAACTGAATCAATGAAATTACTTGGGTGTTGTGTGGGCATTGTCGCATTGAGTTATATGTAACAAAAGCAGAAAAGTGATGCTTGATTGTGCAGGTGGTTTTGCTGGCAACGTTGGACATGATCCACACATACTTTACACCCTTAGTGCTGTGCAAGTCTTGGCACTTTTTGACAAGTTGGATGTTTTAGATGTTGATAAGGTGACAAATTGTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAATGAATGTAAACAAATTTTATACTTGTATTTAATAAAGTGTTATTTAGTTTCTGCAATAAAATGTTATTGTTAAAAATTGCACTATTTGACCCAAATCCAATAAACTAAGATCCAAGGTTGTTTATGTAACTTGAACTAGTATGTGGGGACATACGGGGATCGATGTTCAAGTAACAACCTAAAAAGGTCTATAGTATAGGGATAAGGTTGGGTACCTTATCCTGGTGACACTATGGATACGGCCCGCTTTGTATTATGATACAAACGTTATGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTTAACCACTAACTGTAACACCGTTAGTTGGCTTGGTTTCTATTTCACTAGGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCATGTTCACGAGGAGTTGTCCTTTGATTTGTATGGGTGAGAGTGGCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTCTAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGACTTGAACAATGGGCCCAACCCTCTGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGGGGACTTAAGGACAAAGATGTAAACCAGGGGTAAAACGGTAATTTGACCCAGCTGGGATACGAACACACGTGAAGGACTGACTTGTAGTATTGGTCGATATCCGTGGACACAGAAATATTCTGCAGTGAGAAGAGTGCAGCTGAGGGTCTTTAG

mRNA sequence

ATGAGAGGGCGGGATCCCTTTGTTCAAGCCCCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAGGAGTGAATTCCTTCTTGCACGACTATGTCCCCAGCTATCTACCCGTTCCTATCCCTGAAATGGGAGGCTTATTGAGCACGCTAGCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGCTTATGATCAGGCACGTTGTTCGTGCGCCAGTTGGCACCAGGCATGTTTACATGCGTCAGTGGTACTTGAGGGCGCTGGCGATAGGCGAGAGTCGTGGCTTGGCTGGCTATGGGACTACAGCTGCAAATTTTGTCATCTTCCTTAGACATTCAGTTCTTTCCTTTTTAATATCAGTTCCATTCGGGTCGTTACAAGCATCGGCAGCTAGCTCCACGCCACTCGGCACGTCGCTCGATCGAGCAGCCGTGCGCTCGTGGCGCCTCGACTCCCCAACTCAAGCACACGCCTCGCAGCACGTCACCATTGCCGATCCCACCCCACAACCGATGCAACGCCCGAGGTCCAAGAATGCCCACCGTCGATGGCAGTGCAGCTCCCTTGGACCTCCGGCACATGCCTCGGGGCACAAGCCCAAGGCGACATGCAACATCGCAACATCCTGCACCCAACGAGGTTCATGTCGTGCGTCGAGGCACCCGATCCCACCCCACCATGCACGTTCCGCCGCCACGTCGTCTGCCCTCCGCGAGGAGCCCCGAGGCTGGCACGCAGCACCGCAACATCCCACACCCGACGAGGTTCATGCCGCACGCCCAAAGGCATCCGACCCCGCCCCATCGTGCACGTTCCGCCGCCGTGCCGCCCGCCCTCCCCGGGCCTCCGGGCGGATGCCCGAGGACTGCAAGCAACACCGCAACATCCCACGCCCGACAAGGTTCATGCCGCACGCCCGAAGGCACCCGACCCCACCCCACAGTGCACATTCAGCCACCGCGCCGCCCGCCCTCCTCGGACCTCCGACCGCCACGCCCACGCCCCAAGCATATGCCCATGTACGGCGCATTGTGCTTGGGGCGTGGGCGTGGCGACATAGGGGTACCCATGCAGGCAGGTCGCCCCCCTTTATTATGCTTGTGTTGGAACTCGCTCTCGTTCGTTCTCCCCTGCGTTCATCTTTGCATATCTTTAGCTGGACTCCTACCAGGTCGTTTTATGCACAGAAAAAGGATGATTTTCAATCCGTGGTGATGGAACATCTAAGAATGAATGGTGCTTACTGGGGTCTGACTGCACTGGATATTCTTGGAAAGCTCAACACTGTGGATGCTGATGAGGTTGTTTCATGGGTCATGTCATGCCAACACGAGTCAGGTGGTTTTGCTGGCAACGTTGGACATGATCCACACATACTTTACACCCTTAGTGCTGTGCAAGTCTTGGCACTTTTTGACAAGTTGGATGTTTTAGATGTTGATAAGGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCATGTTCACGAGGAGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGAGGGTCTTTAG

Coding sequence (CDS)

ATGAGAGGGCGGGATCCCTTTGTTCAAGCCCCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTATCCCTAATTCGGGTAGGAGTGAATTCCTTCTTGCACGACTATGTCCCCAGCTATCTACCCGTTCCTATCCCTGAAATGGGAGGCTTATTGAGCACGCTAGCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGCTTATGATCAGGCACGTTGTTCGTGCGCCAGTTGGCACCAGGCATGTTTACATGCGTCAGTGGTACTTGAGGGCGCTGGCGATAGGCGAGAGTCGTGGCTTGGCTGGCTATGGGACTACAGCTGCAAATTTTGTCATCTTCCTTAGACATTCAGTTCTTTCCTTTTTAATATCAGTTCCATTCGGGTCGTTACAAGCATCGGCAGCTAGCTCCACGCCACTCGGCACGTCGCTCGATCGAGCAGCCGTGCGCTCGTGGCGCCTCGACTCCCCAACTCAAGCACACGCCTCGCAGCACGTCACCATTGCCGATCCCACCCCACAACCGATGCAACGCCCGAGGTCCAAGAATGCCCACCGTCGATGGCAGTGCAGCTCCCTTGGACCTCCGGCACATGCCTCGGGGCACAAGCCCAAGGCGACATGCAACATCGCAACATCCTGCACCCAACGAGGTTCATGTCGTGCGTCGAGGCACCCGATCCCACCCCACCATGCACGTTCCGCCGCCACGTCGTCTGCCCTCCGCGAGGAGCCCCGAGGCTGGCACGCAGCACCGCAACATCCCACACCCGACGAGGTTCATGCCGCACGCCCAAAGGCATCCGACCCCGCCCCATCGTGCACGTTCCGCCGCCGTGCCGCCCGCCCTCCCCGGGCCTCCGGGCGGATGCCCGAGGACTGCAAGCAACACCGCAACATCCCACGCCCGACAAGGTTCATGCCGCACGCCCGAAGGCACCCGACCCCACCCCACAGTGCACATTCAGCCACCGCGCCGCCCGCCCTCCTCGGACCTCCGACCGCCACGCCCACGCCCCAAGCATATGCCCATGTACGGCGCATTGTGCTTGGGGCGTGGGCGTGGCGACATAGGGGTACCCATGCAGGCAGGTCGCCCCCCTTTATTATGCTTGTGTTGGAACTCGCTCTCGTTCGTTCTCCCCTGCGTTCATCTTTGCATATCTTTAGCTGGACTCCTACCAGGTCGTTTTATGCACAGAAAAAGGATGATTTTCAATCCGTGGTGATGGAACATCTAAGAATGAATGGTGCTTACTGGGGTCTGACTGCACTGGATATTCTTGGAAAGCTCAACACTGTGGATGCTGATGAGGTTGTTTCATGGGTCATGTCATGCCAACACGAGTCAGGTGGTTTTGCTGGCAACGTTGGACATGATCCACACATACTTTACACCCTTAGTGCTGTGCAAGTCTTGGCACTTTTTGACAAGTTGGATGTTTTAGATGTTGATAAGGATGACCTAGACAACTCAGTCTCAATCCTGAGTGGATTATGGACTCATGTTCACGAGGAGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGAGGGTCTTTAG

Protein sequence

MRGRDPFVQAPESALKGTTSLLSLIRVGVNSFLHDYVPSYLPVPIPEMGGLLSTLACALSVQDGVELMIRHVVRAPVGTRHVYMRQWYLRALAIGESRGLAGYGTTAANFVIFLRHSVLSFLISVPFGSLQASAASSTPLGTSLDRAAVRSWRLDSPTQAHASQHVTIADPTPQPMQRPRSKNAHRRWQCSSLGPPAHASGHKPKATCNIATSCTQRGSCRASRHPIPPHHARSAATSSALREEPRGWHAAPQHPTPDEVHAARPKASDPAPSCTFRRRAARPPRASGRMPEDCKQHRNIPRPTRFMPHARRHPTPPHSAHSATAPPALLGPPTATPTPQAYAHVRRIVLGAWAWRHRGTHAGRSPPFIMLVLELALVRSPLRSSLHIFSWTPTRSFYAQKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDKDDLDNSVSILSGLWTHVHEELSFDLYGEKSAAEGL
Homology
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BLAST of Spg020985 vs. NCBI nr
Match: XP_038898589.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida] >XP_038898590.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida] >XP_038898592.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida] >XP_038898593.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida] >XP_038898594.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida] >XP_038898595.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida] >XP_038898596.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida] >XP_038898597.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 189.5 bits (480), Expect = 7.3e-44
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 395 RSFYAQKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFA 454
           RSF AQ+KDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVD DEVVSWVMSCQHESGGFA
Sbjct: 10  RSFCAQRKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDVDEVVSWVMSCQHESGGFA 69

Query: 455 GNVGHDPHILYTLSAVQVLALFDKLDVLDVDKD 488
           GNVGHDPHILYTLSAVQVLALFDKLDVLDVDKD
Sbjct: 70  GNVGHDPHILYTLSAVQVLALFDKLDVLDVDKD 102

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BLAST of Spg020985 vs. NCBI nr
Match: XP_022153059.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-43
Identity = 99/134 (73.88%), Postives = 104/134 (77.61%), Query Frame = 0 

Query: 382 LRSSLHIFSWTPTRSFYAQKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVS 441
           LRS L   S+   RSFYAQ+KDDFQSVVMEHLRMNGAYWGLT LDILGKLNTVD DEVVS
Sbjct: 8   LRSMLST-SYLLKRSFYAQRKDDFQSVVMEHLRMNGAYWGLTTLDILGKLNTVDVDEVVS 67

Query: 442 WVMSCQHESGGFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSIL 501
           WVMSCQHESGGFAGN+ HDPHILYTLSAVQVLALFDKLDVLDVDK       L N     
Sbjct: 68  WVMSCQHESGGFAGNIEHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSF 127

Query: 502 SG-LWTHVHEELSF 510
           SG +W  V    S+
Sbjct: 128 SGDIWGEVDSRFSY 140

[Close]
BLAST of Spg020985 vs. NCBI nr
Match: XP_038898579.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038898581.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038898582.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038898583.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038898584.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038898585.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038898586.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida] >XP_038898587.1 geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-41
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           ++KDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVD DEVVSWVMSCQHESGGFAGNVGH
Sbjct: 18  KRKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDVDEVVSWVMSCQHESGGFAGNVGH 77

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDKD 488
           DPHILYTLSAVQVLALFDKLDVLDVDKD
Sbjct: 78  DPHILYTLSAVQVLALFDKLDVLDVDKD 105

[Close]
BLAST of Spg020985 vs. NCBI nr
Match: XP_038898588.1 (geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-41
Identity = 91/116 (78.45%), Postives = 95/116 (81.90%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           ++KDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVD DEVVSWVMSCQHESGGFAGNVGH
Sbjct: 18  KRKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDVDEVVSWVMSCQHESGGFAGNVGH 77

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPHILYTLSAVQVLALFDKLDVLDVDK       L N     SG +W  V    S+
Sbjct: 78  DPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVSLQNEDGSFSGDIWGEVDSRFSY 133

[Close]
BLAST of Spg020985 vs. NCBI nr
Match: XP_022991640.1 (geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita maxima] >XP_022991641.1 geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita maxima] >XP_022991642.1 geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita maxima])

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-41
Identity = 91/116 (78.45%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           ++KDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQH+SGGFAGNVGH
Sbjct: 18  KRKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHQSGGFAGNVGH 77

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPHILYTLSAVQVLALFDKLDVLDVDK       L N     SG +W  V    S+
Sbjct: 78  DPHILYTLSAVQVLALFDKLDVLDVDKVTDYVVGLQNEDGSFSGDIWGEVDSRFSY 133

[Close]
BLAST of Spg020985 vs. ExPASy Swiss-Prot
Match: Q9LHL5 (Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702 GN=RGTB2 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.4e-36
Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           +KK+ F+SVVM+HLRMNGAYWGLT L +L KL +V  DEVVSWVM+CQHESGGFAGN GH
Sbjct: 21  KKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGFAGNTGH 80

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPH+LYTLSAVQ+LALFDKL++LDV+K       L N     SG +W  V    S+
Sbjct: 81  DPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDTRFSY 136

[Close]
BLAST of Spg020985 vs. ExPASy Swiss-Prot
Match: Q84J75 (Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702 GN=RGTB1 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.8e-35
Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           +KK+ F+SVVM+HLRMNGAYWGLT LD+L KL  V  +EV+SW+M+CQHESGGFAGN GH
Sbjct: 26  KKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWLMTCQHESGGFAGNTGH 85

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPHILYTLSAVQ+LALFDK+++LD+ K       L N     SG +W  +    S+
Sbjct: 86  DPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDTRFSY 141

[Close]
BLAST of Spg020985 vs. ExPASy Swiss-Prot
Match: P53611 (Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGTB PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 2.4e-26
Identity = 46/89 (51.69%), Postives = 74/89 (83.15%), Query Frame = 0 

Query: 398 YAQKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNV 457
           Y  KKDD++  + E+LRM+G YWGLT +D++G+L+ ++ +E+++++ SCQHE GG + ++
Sbjct: 30  YGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASI 89

Query: 458 GHDPHILYTLSAVQVLALFDKLDVLDVDK 487
           GHDPH+LYTLSAVQ+L L+D ++V+DV+K
Sbjct: 90  GHDPHLLYTLSAVQILTLYDSINVIDVNK 118

[Close]
BLAST of Spg020985 vs. ExPASy Swiss-Prot
Match: Q5E9B3 (Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 3.2e-26
Identity = 45/89 (50.56%), Postives = 74/89 (83.15%), Query Frame = 0 

Query: 398 YAQKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNV 457
           Y  KKDD++  + E+LRM+G YWGLT +D++G+L+ ++ +E+++++ SCQHE GG + ++
Sbjct: 30  YGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKSCQHECGGISASI 89

Query: 458 GHDPHILYTLSAVQVLALFDKLDVLDVDK 487
           GHDPH+LYTLSAVQ+L L+D ++V+D++K
Sbjct: 90  GHDPHLLYTLSAVQILTLYDSINVIDINK 118

[Close]
BLAST of Spg020985 vs. ExPASy Swiss-Prot
Match: P53612 (Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabggtb PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 9.3e-26
Identity = 46/89 (51.69%), Postives = 72/89 (80.90%), Query Frame = 0 

Query: 398 YAQKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNV 457
           Y  KKDD++  + E+LRM+G YWGLT +D++G+L+ ++ +E++ ++ SCQHE GG + ++
Sbjct: 38  YGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREEILVFIKSCQHECGGISASI 97

Query: 458 GHDPHILYTLSAVQVLALFDKLDVLDVDK 487
           GHDPH+LYTLSAVQ+L L+D + V++VDK
Sbjct: 98  GHDPHLLYTLSAVQILTLYDSVHVINVDK 126

[Close]
BLAST of Spg020985 vs. ExPASy TrEMBL
Match: A0A6J1DHW7 (Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN=LOC111020651 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.0e-44
Identity = 99/134 (73.88%), Postives = 104/134 (77.61%), Query Frame = 0 

Query: 382 LRSSLHIFSWTPTRSFYAQKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVS 441
           LRS L   S+   RSFYAQ+KDDFQSVVMEHLRMNGAYWGLT LDILGKLNTVD DEVVS
Sbjct: 8   LRSMLST-SYLLKRSFYAQRKDDFQSVVMEHLRMNGAYWGLTTLDILGKLNTVDVDEVVS 67

Query: 442 WVMSCQHESGGFAGNVGHDPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSIL 501
           WVMSCQHESGGFAGN+ HDPHILYTLSAVQVLALFDKLDVLDVDK       L N     
Sbjct: 68  WVMSCQHESGGFAGNIEHDPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSF 127

Query: 502 SG-LWTHVHEELSF 510
           SG +W  V    S+
Sbjct: 128 SGDIWGEVDSRFSY 140

[Close]
BLAST of Spg020985 vs. ExPASy TrEMBL
Match: A0A6J1JME6 (Geranylgeranyl transferase type-2 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111488198 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.6e-42
Identity = 91/116 (78.45%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           ++KDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQH+SGGFAGNVGH
Sbjct: 18  KRKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHQSGGFAGNVGH 77

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPHILYTLSAVQVLALFDKLDVLDVDK       L N     SG +W  V    S+
Sbjct: 78  DPHILYTLSAVQVLALFDKLDVLDVDKVTDYVVGLQNEDGSFSGDIWGEVDSRFSY 133

[Close]
BLAST of Spg020985 vs. ExPASy TrEMBL
Match: A0A0A0K723 (Geranylgeranyl transferase type-2 subunit beta OS=Cucumis sativus OX=3659 GN=Csa_7G433280 PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-41
Identity = 91/116 (78.45%), Postives = 96/116 (82.76%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           +KKDDFQSVVMEHLRMNGAYWGLTALDILGKL+TVDADEVVSWVMSCQHESGGF+GNVGH
Sbjct: 18  KKKDDFQSVVMEHLRMNGAYWGLTALDILGKLDTVDADEVVSWVMSCQHESGGFSGNVGH 77

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPHILYTLSAVQVLALFDKLDVLDVDK       L N     SG +W  V    S+
Sbjct: 78  DPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDSRFSY 133

[Close]
BLAST of Spg020985 vs. ExPASy TrEMBL
Match: A0A1S3CDW8 (Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo OX=3656 GN=LOC103499776 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.1e-41
Identity = 91/116 (78.45%), Postives = 95/116 (81.90%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           ++KDDFQSVVMEHLRMNGAYWGLTALDILGKLN VDADEVVSWVMSCQHESGGFAGNVGH
Sbjct: 18  KRKDDFQSVVMEHLRMNGAYWGLTALDILGKLNIVDADEVVSWVMSCQHESGGFAGNVGH 77

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPHILYTLSAVQVLALFDKLDVLDVDK       L N     SG +W  V    S+
Sbjct: 78  DPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDSRFSY 133

[Close]
BLAST of Spg020985 vs. ExPASy TrEMBL
Match: A0A5A7UX72 (Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002240 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.1e-41
Identity = 91/116 (78.45%), Postives = 95/116 (81.90%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           ++KDDFQSVVMEHLRMNGAYWGLTALDILGKLN VDADEVVSWVMSCQHESGGFAGNVGH
Sbjct: 18  KRKDDFQSVVMEHLRMNGAYWGLTALDILGKLNIVDADEVVSWVMSCQHESGGFAGNVGH 77

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPHILYTLSAVQVLALFDKLDVLDVDK       L N     SG +W  V    S+
Sbjct: 78  DPHILYTLSAVQVLALFDKLDVLDVDKVTNYVVGLQNEDGSFSGDIWGEVDSRFSY 133

[Close]
BLAST of Spg020985 vs. TAIR 10
Match: AT3G12070.1 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-37
Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           +KK+ F+SVVM+HLRMNGAYWGLT L +L KL +V  DEVVSWVM+CQHESGGFAGN GH
Sbjct: 21  KKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGFAGNTGH 80

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPH+LYTLSAVQ+LALFDKL++LDV+K       L N     SG +W  V    S+
Sbjct: 81  DPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDTRFSY 136

[Close]
BLAST of Spg020985 vs. TAIR 10
Match: AT3G12070.2 (RAB geranylgeranyl transferase beta subunit 2 )

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-37
Identity = 74/116 (63.79%), Postives = 88/116 (75.86%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           +KK+ F+SVVM+HLRMNGAYWGLT L +L KL +V  DEVVSWVM+CQHESGGFAGN GH
Sbjct: 21  KKKESFESVVMDHLRMNGAYWGLTTLALLDKLGSVSEDEVVSWVMTCQHESGGFAGNTGH 80

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPH+LYTLSAVQ+LALFDKL++LDV+K       L N     SG +W  V    S+
Sbjct: 81  DPHVLYTLSAVQILALFDKLNILDVEKVSNYIAGLQNEDGSFSGDIWGEVDTRFSY 136

[Close]
BLAST of Spg020985 vs. TAIR 10
Match: AT5G12210.2 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 152.9 bits (385), Expect = 7.0e-37
Identity = 71/117 (60.68%), Postives = 88/117 (75.21%), Query Frame = 0 

Query: 399 AQKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVG 458
           A+KK+ F+SVVM+HLRMNGAYWGLT LD+L KL  V  +EV+SW+M+CQHESGGFAGN G
Sbjct: 24  AEKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWLMTCQHESGGFAGNTG 83

Query: 459 HDPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           HDPHILYTLSAVQ+LALFDK+++LD+ K       L N     SG +W  +    S+
Sbjct: 84  HDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDTRFSY 140

[Close]
BLAST of Spg020985 vs. TAIR 10
Match: AT5G12210.1 (RAB geranylgeranyl transferase beta subunit 1 )

HSP 1 Score: 151.0 bits (380), Expect = 2.7e-36
Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = 0 

Query: 400 QKKDDFQSVVMEHLRMNGAYWGLTALDILGKLNTVDADEVVSWVMSCQHESGGFAGNVGH 459
           +KK+ F+SVVM+HLRMNGAYWGLT LD+L KL  V  +EV+SW+M+CQHESGGFAGN GH
Sbjct: 26  KKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWLMTCQHESGGFAGNTGH 85

Query: 460 DPHILYTLSAVQVLALFDKLDVLDVDK-----DDLDNSVSILSG-LWTHVHEELSF 510
           DPHILYTLSAVQ+LALFDK+++LD+ K       L N     SG +W  +    S+
Sbjct: 86  DPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDTRFSY 141

The following BLAST results are available for this feature:
BLAST of Spg020985 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038898589.17.3e-4496.77geranylgeranyl transferase type-2 subunit beta 1-like isoform X3 [Benincasa hisp... [more]
XP_022153059.11.2e-4373.88geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Momordica char... [more]
XP_038898579.12.0e-4196.59geranylgeranyl transferase type-2 subunit beta 1-like isoform X1 [Benincasa hisp... [more]
XP_038898588.12.0e-4178.45geranylgeranyl transferase type-2 subunit beta 1-like isoform X2 [Benincasa hisp... [more]
XP_022991640.12.0e-4178.45geranylgeranyl transferase type-2 subunit beta 1-like [Cucurbita maxima] >XP_022... [more]
BLAST of Spg020985 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LHL54.4e-3663.79Geranylgeranyl transferase type-2 subunit beta 2 OS=Arabidopsis thaliana OX=3702... [more]
Q84J753.8e-3560.34Geranylgeranyl transferase type-2 subunit beta 1 OS=Arabidopsis thaliana OX=3702... [more]
P536112.4e-2651.69Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens OX=9606 GN=RABGGT... [more]
Q5E9B33.2e-2650.56Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus OX=9913 GN=RABGGTB ... [more]
P536129.3e-2651.69Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus OX=10090 GN=Rabgg... [more]
BLAST of Spg020985 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DHW76.0e-4473.88Geranylgeranyl transferase type-2 subunit beta OS=Momordica charantia OX=3673 GN... [more]
A0A6J1JME69.6e-4278.45Geranylgeranyl transferase type-2 subunit beta OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A0A0K7231.6e-4178.45Geranylgeranyl transferase type-2 subunit beta OS=Cucumis sativus OX=3659 GN=Csa... [more]
A0A1S3CDW82.1e-4178.45Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A5A7UX722.1e-4178.45Geranylgeranyl transferase type-2 subunit beta OS=Cucumis melo var. makuwa OX=11... [more]
BLAST of Spg020985 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G12070.13.2e-3763.79RAB geranylgeranyl transferase beta subunit 2 [more]
AT3G12070.23.2e-3763.79RAB geranylgeranyl transferase beta subunit 2 [more]
AT5G12210.27.0e-3760.68RAB geranylgeranyl transferase beta subunit 1 [more]
AT5G12210.12.7e-3660.34RAB geranylgeranyl transferase beta subunit 1 [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001330PFTB repeatPFAMPF00432Prenyltranscoord: 435..475
e-value: 2.7E-10
score: 39.8
NoneNo IPR availableGENE3D1.50.10.20coord: 394..513
e-value: 1.7E-25
score: 91.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..316
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..204
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..324
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..179
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..300
NoneNo IPR availablePANTHERPTHR11774:SF13GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT BETAcoord: 399..487
IPR045089Prenyltransferase subunit betaPANTHERPTHR11774GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNITcoord: 399..487
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidSUPERFAMILY48239Terpenoid cyclases/Protein prenyltransferasescoord: 399..483

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020985.1Spg020985.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0018344 protein geranylgeranylation
cellular_component GO:0005968 Rab-protein geranylgeranyltransferase complex
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004663 Rab geranylgeranyltransferase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008318 protein prenyltransferase activity