Spg020914 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020914
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 1691791 .. 1694129 (-)
RNA-Seq ExpressionSpg020914
SyntenySpg020914
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCTTTCAAAGGTCTACCATTACAACATATGCGGCAGAAGAAATACGTGAGGCACTAAAAGAAAGTCGATCGATGGATGTAAGTTATCTATATCGGCTTTTAAAGTCGCTTACTTGTTTACGCGCGCATACCCCAAAATCTGATTATTGTCATGTTCATATAAATACGAAGATATACCCTGTTGACCGAGTGTAGTTCCAAGTTCATGATAAATACAAGCAATTCGAAGTAAATATCAACAACCGAAGTTGCACGTGCAGGAGGTGGGATCTAGATCTTATCCCGTGTGCCCATGCATGCATAGCTATTTGTCGTAAGGGTTTGGGCATCGATACATTTGTTCACGAGTTTTACCTTAACTCAAACCTCCAAAAGATGTATAGTGCAAACGTGCATCCTATTGGATCCATGAGGCACGATTCTGTCACATCAACAGCTGAGGTTAACACAGTTCACCCGCCCAATTCAAAACGTGCTGCTGGAAGGCCAAAAAAGAAGAGGATTAGACATCATAGTGAGAGAATACAGAGTCAAAGGTGTGGATGTTGTGGGCAGCTAGGACATAATCGTAGGCGATGCAATAATCCCATCACTTGATGAGTTGCCTTTTTGTTTCCATTTTTGTACAGTTCGGGTGGTTAAAGATTTGAATAGCGGTAAAATAATTCAATGCAGATATGAATAATTGTTTCTCTTACATATCATCCATCTTTTAAAAATAAGGGTTCTATATGTCGGTGTCACAAGTATTTTTGGTGGGGGAGACCTCTTGTTTTTAAAGTATATTCATTTGTATGATTCAAGCAACACGAGCGTTACAGGGGGTATATTGGGATATCCCACCATTTGGTGATGGAGTTACATTATACAACAATTTAAACAGTAGCATACCTACCTAGATCACAGACGGCAAAATCAAAAAGCAATACGTTCACTATATAACTTGACAAACACTAGCGTCACAGAGTATATTTTGGTATCCACCAGAGCGCCCTAGCATATGGACATGCAATATACAACAAAATCTATCAGTGACTATCACTGATAGACTTTAATTAATCGGAGTCTATCAGTGATAGTCACTGATAGACTCTGAATAATCGGAGTCTATCAGTAGACTGATAGATTCTAATCAATCAGAGTCTATCGTTGATAAACTCTGATAATCGAAGTCTATCAGATAGATTCTAATTAACCAGAGTCTATCAATGTCTATCAGTAATATACTCTGATAGATTTTGCTATATTTTTCATTCCTTTTACATTGTGCTATTATTGCAATTATATAATTCTTATTTGCCACCCACTGCAAATTCTCTTAATGCTATGGTACTATGCTCAATGTCGGTAGTGTCTCGAAGTTACTACCGGCATCTCAACGTTGTAAACATACACGCGCCTTCAATTCTGTCTGAAGCATCTCAATGCTAGGACTAGCGTCTCAACGTTGTCGCCTTTACTATAAATGCTAATTTTCATTTAGGTCAAAAATGTTCTCTAGATTCTTAGCCACTTTCAGATCGTTTTTAAGCTTCTCCTTACTGATTTTTCTTGTAATTATTCTAGTTCCGGAATTTCTTTTCCAAACCATGGAGTTTTGCCACACTACCCCAATGGCTGGCTAAGTTCTCGTGTCAATTCAGAGGTTTGTCGAGCTTAATATTGTAGGGCTCGTTTGCTAACGTTTCCATTTCCCGTTTCTTGTTTCTGGTTTCTTATTTCCTGTTTCTTGTTTCTTGTTTTTTAAGAACTAAAAACAGAAACATGTTTGATAACTATTTCTGTTTCTTGTTTCTCTAAAAAAAGAAACAGAAACAGATATGTGTTTGATAATTGTTTCCTGTTTCTTGATTTTTAGTTGAAATAAAATTTGGTACATATAATATAAAAATTATATATAACATACATTAAAATTATAGTCAGAGGTTGTCGATATCGAAGGTCGGCAGCGACCGGTAGTCGGAGGTCGATGGTGGTGGCCGATAGTCGGAGGTCGACATCGTAGTCGGAGGTCGAAGGTCGCGACCGGTCGGCGGAGGTTGGTCAGTGGAGGTCAGTGGAGGTCGGTGGCGGTCGGTTAGCGGAGGTCGGCGACACCTAGTTGTTGGAGGTCGACGAGCCTGGTAGTAAGAGGTTGACAGTAGCGGTCGGTCAGCAAAGGTCGATGGCGGCCGGTAGTCGGAGATTGATGGTAGCGGTCGGTCGCAGGCTGTAGTCACAGGTCGACGATGGCGACTGAAGGACGAAGGTGGACGACGACTGATAGTCGTAGGTCGAAGGTGGCAGTCGGTCGACGGAGGCCGACAGTCGAAGGTCGACGGTGGCGCCCGGTAG

mRNA sequence

ATGCAAGCTTTCAAAGCTATTTGTCGTAAGGGTTTGGGCATCGATACATTTGTTCACGAGTTTTACCTTAACTCAAACCTCCAAAAGATGTATAGTGCAAACGTGCATCCTATTGGATCCATGAGGCACGATTCTGTCACATCAACAGCTGAGGTTAACACAGTTCACCCGCCCAATTCAAAACGTGCTGCTGGAAGGCCAAAAAAGAAGAGGATTAGACATCATAGTGAGAGAATACAGAGTCAAAGTTCCGGAATTTCTTTTCCAAACCATGGAGTTTTGCCACACTACCCCAATGGCTGGCTAAGTTCTCGTGTCAATTCAGAGTCGGAGATTGATGGTAGCGGTCGGTCGCAGGCTGTAGTCACAGGTCGACGATGGCGACTGAAGGACGAAGGTGGACGACGACTGATAGTCGTAGGTCGAAGGTGGCAGTCGGTCGACGGAGGCCGACAGTCGAAGGTCGACGGTGGCGCCCGGTAG

Coding sequence (CDS)

ATGCAAGCTTTCAAAGCTATTTGTCGTAAGGGTTTGGGCATCGATACATTTGTTCACGAGTTTTACCTTAACTCAAACCTCCAAAAGATGTATAGTGCAAACGTGCATCCTATTGGATCCATGAGGCACGATTCTGTCACATCAACAGCTGAGGTTAACACAGTTCACCCGCCCAATTCAAAACGTGCTGCTGGAAGGCCAAAAAAGAAGAGGATTAGACATCATAGTGAGAGAATACAGAGTCAAAGTTCCGGAATTTCTTTTCCAAACCATGGAGTTTTGCCACACTACCCCAATGGCTGGCTAAGTTCTCGTGTCAATTCAGAGTCGGAGATTGATGGTAGCGGTCGGTCGCAGGCTGTAGTCACAGGTCGACGATGGCGACTGAAGGACGAAGGTGGACGACGACTGATAGTCGTAGGTCGAAGGTGGCAGTCGGTCGACGGAGGCCGACAGTCGAAGGTCGACGGTGGCGCCCGGTAG

Protein sequence

MQAFKAICRKGLGIDTFVHEFYLNSNLQKMYSANVHPIGSMRHDSVTSTAEVNTVHPPNSKRAAGRPKKKRIRHHSERIQSQSSGISFPNHGVLPHYPNGWLSSRVNSESEIDGSGRSQAVVTGRRWRLKDEGGRRLIVVGRRWQSVDGGRQSKVDGGAR
Homology
[Close]
BLAST of Spg020914 vs. NCBI nr
Match: XP_022157216.1 (uncharacterized protein LOC111023978 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-06
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 6   AICRKGLGIDTFVHEFYLNSNLQKMYSANVHPIGSMRHDSVTSTAEVNTVHPPNSKRAAG 65
           AI R+GL + +FVH+FY    LQ +YS NVHPIG + +       +   + PPN KR+AG
Sbjct: 149 AISRRGLELHSFVHKFYHVKTLQLLYSWNVHPIGQIENILPPVQPDDTGILPPNVKRSAG 208

Query: 66  RPKKKRI 73
           RP+KKR+
Sbjct: 209 RPRKKRL 215

[Close]
BLAST of Spg020914 vs. ExPASy TrEMBL
Match: A0A6J1DXB4 (uncharacterized protein LOC111023978 OS=Momordica charantia OX=3673 GN=LOC111023978 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-07
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 0 

Query: 6   AICRKGLGIDTFVHEFYLNSNLQKMYSANVHPIGSMRHDSVTSTAEVNTVHPPNSKRAAG 65
           AI R+GL + +FVH+FY    LQ +YS NVHPIG + +       +   + PPN KR+AG
Sbjct: 149 AISRRGLELHSFVHKFYHVKTLQLLYSWNVHPIGQIENILPPVQPDDTGILPPNVKRSAG 208

Query: 66  RPKKKRI 73
           RP+KKR+
Sbjct: 209 RPRKKRL 215

The following BLAST results are available for this feature:
BLAST of Spg020914 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157216.11.9e-0647.76uncharacterized protein LOC111023978 [Momordica charantia][more]
BLAST of Spg020914 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg020914 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXB49.0e-0747.76uncharacterized protein LOC111023978 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
BLAST of Spg020914 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020914.1Spg020914.1mRNA