Spg020841 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020841
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	syndetin isoform X1
Location	scaffold10: 29458030 .. 29460722 (-)
RNA-Seq Expression	Spg020841
Synteny	Spg020841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTACTTTTTGAGAAGAGTTAAGTTTTGGTTTAAAGTCAGTAAAAGATTTAAGTTGAATTATTTTGGATAATCAAAGCCCTTCCCTATTTATTTAAATTGATTATTTTTGTTTGGAGTTTAAAAAGAAGAGGAAAGGAAAAGAAAGAAAAAAAAAAAGCCCTAGAAAGCATCTTCCTCCCTCTCATTCGCGTGAACCACCCTCCCTCTCTTCTCCTTCTTTCCCTCTCTTCTCCTTCTTGCCGTGAGAACCAACCCAGCGTCGCCGCTCCTGTTCCGCTGCCGCCGTTCTTCCCGTCACCGTCGTCTCCCCTTCCCCTTTCGTGCGCGACCGCACCCATGAGACCCACGAGATTTTAAGTTGAACCCCGCACCCGTCGCCGTCGTCTCCGATTCCTCTTTCCTCTTTCGGGTGTTGGAGAGTGGGTGTCGGGCAGCAGCGTTTTCAGCCATTGGTTGCATTTTTCCGGTGGTTTCAGCGGTGTTCAACATTGGGTAAGCAAAAAAATCTAGAGTGTTTGAGTCGATTGGGGTGATTAATCGATACCCAACTGTTTCTTAATCATTTCCTCCATTTTTCTGGCAAGCAGAATTGTGGACAGCAACGTTTTCCTCAATTTTTGGGTGAATTTGTGTATCTCCAGCGGTGGGTAAGAGTTTTTAAGTTGATTTTGGGTTGGTTATTATGTGTAACCAAATACCCATTGATTTTAGTTTCCAATTTGGATTTACTATCGTTTATTTATTTATTTATTAGTACTTTTCTATTTATTTTGTTTGAACTGCTGGTAGTTAGAATCAGATTTTGTTGTTGCTCGCTTTCCTTCATTTGGTGGCTTTTCTGTTGGGCATTTAAATATTTTATTTTAAAAAGCATGTTTTTGATTCAGGGTTCAATTGAACATACTCCTAACATGAAGCAACGAGAAGATAATTATAATCTTAATTTAGGAGAGACAGAGGAGTCAATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAGCATCAACCAGTGGCTCTCCCTGGTATCATCTGAAAAAAGATGCTATAAGTTTTATTTCCCAAACCCTACAAAGAGGCCGTAAGAACCTTTGGCAACTAACTACAAGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACGAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACGTAAGTTCACCCTCTTGCTCAACTTTTCCATACTTCTGGTCTACAATTGTTTATATAAGCAGCGTTTGTAGTTTGTGGGATTTGAAATATAGTTGAGTTTTTCCTTTAGTTTCATAGTTTACTTGGTTGTATGGCTATCCTGCAGTTACGGTAGCCATACAAATCGATGAGTTTGTGTGATTTAAAGTTTGTTTGGATGAATTTATGGGATGTGGACTAAGTGAGTGAATTAGACATGTCTTTTGGCTTCTAAAGGTTAGTTTGAGTGAGTTTGTGTGATTTGAAGTGTGTTTGGATGAGTTTGGGGGATTTGAATTTCTTTTGGGTGGCTTGGGTGCGTGTTTGACTTTTAAGGGTCAGTTTAGGTGAGTTTGTGGGATTTGAAATGTGTTTTAGTAAGTTTATTAGATGTGAATTGAGTATGAGTAAATTAGGAACTTTTGGATGAGTTTGTGGGATTTAAAATTTGTTTGGGTGAGTTAGACATGTGTTTGACTTTTATGGGTCAATTTAGGTGGGATTGTATGCTTTGAAGTGTGTTTAGGTGAGTTTGGGAGAACTAGAGTAGTTAAGGTGAATTTAAAGTATCCAATAAAGCTTTCGAGTAACATTTGATTATAATTTTGTTTAAGTAGTTGTATTAGTTTTCATTCACTCACAGGTCATGTTAGTTTCTTAATGAAAAGTCCTTTGTTTCTTAGGAAAGAAATGAAGTTTAGTTCATTGAAATCAAATTGTATTAGTTTCAACTTGTTGAACTCGTAGAGATTTGTATTTTTACAAATCAAATGTGTGGCTGCTAAGCAACTAATTAACAAAGGTTTTGTTTTCCATGCACACCTCAACCTTTCGACCATCCATTGCTTTTAAGTTTCACTTGGATAACATGAGTATTTGCATACCTTTTCAAATATTTTCTGTATTATAAAATTCTAGGTCATTCTAAATTCGAGATGATTCGGTTGGACCCTGAGTATTAACTATGATATCGTTAGTCTTTTCAATATCTAATGCTTATTTGTATTTAAACTATCAGGAGTAGACATCTCTACGCTTAGTGGAATCATCAATGTATTTGAGAAAGTCAACATATGACACAGGAGGCTTAAGGAGGTAGCCATCGCAAACATGTCTTTCACCATCCCTCCAGTTCACTTGGTTGGTCTTTAGTTCAAAGTTGAAATATTTTAGAGTTGTACTTATTTTGTTTAGCAATTTTGCTTTTTCTTTGTAAATTGGATCATGGACGTGATTTGTAGATGGACAGAAAGTTTCATGTATATACACTATTATATTTTATTAATTAAATATATGTTCGTTGAGT

mRNA sequence

ATGAAGCAACGAGAAGATAATTATAATCTTAATTTAGGAGAGACAGAGGAGTCAATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAGCATCAACCAGTGGCTCTCCCTGGTATCATCTGAAAAAAGATGCTATAAGTTTTATTTCCCAAACCCTACAAAGAGGCCGTAAGAACCTTTGGCAACTAACTACAAGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACGAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACGAGTAG

Coding sequence (CDS)

ATGAAGCAACGAGAAGATAATTATAATCTTAATTTAGGAGAGACAGAGGAGTCAATGACCAATGTCTCTTCTATCGGGACTACAGGAATTATGAATTCTGTTTACATGGATGGAGGTGATCCCAATAGGGAGTCCCGGGCAGATAGCAGTACAGCATCAACCAGTGGCTCTCCCTGGTATCATCTGAAAAAAGATGCTATAAGTTTTATTTCCCAAACCCTACAAAGAGGCCGTAAGAACCTTTGGCAACTAACTACAAGTCGTGTGTCAGTACTGCTTTCTTCTGCTGCTGTTTGTTCAACGAGCATTCATCAATTTTTGAAAAACTATGAAGATCTCAATGTCTTCTTATTGGCTGGAGAAGCCTTCTGTGGAGTTGAAGCAGTTGAGTTTAGGCAAAAGTTGAAGGTTGTTTGTGAAAACTATTATGTGGCTTTCCATAAGCAGAGTATGCACGAGTAG

Protein sequence

MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFHKQSMHE

Homology

[Close]

BLAST of Spg020841 vs. NCBI nr
Match: XP_022152900.1 (syndetin isoform X1 [Momordica charantia])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 136/152 (89.47%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MKQ++D+Y LNLG+TEE  TNVSS+GTTGIMNSVYMD  DP+RESR DSSTASTSGSPWY
Sbjct: 423 MKQQDDSYVLNLGDTEELTTNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTSGSPWY 482

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 483 HLRKDAISFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 542

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 543 EAFCGVEAVEFRQKLKSVCENYYVAFHKQSMH 574

[Close]

BLAST of Spg020841 vs. NCBI nr
Match: XP_022152901.1 (syndetin isoform X2 [Momordica charantia])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 136/152 (89.47%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MKQ++D+Y LNLG+TEE  TNVSS+GTTGIMNSVYMD  DP+RESR DSSTASTSGSPWY
Sbjct: 423 MKQQDDSYVLNLGDTEELTTNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTSGSPWY 482

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 483 HLRKDAISFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 542

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 543 EAFCGVEAVEFRQKLKSVCENYYVAFHKQSMH 574

[Close]

BLAST of Spg020841 vs. NCBI nr
Match: XP_038895533.1 (syndetin isoform X1 [Benincasa hispida])

HSP 1 Score: 271.2 bits (692), Expect = 5.6e-69
Identity = 134/152 (88.16%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MKQ EDN+++NLG+TEE   NVSS+G+TGI NSVYMDGGD NRESR DSSTASTSGSPWY
Sbjct: 424 MKQPEDNHDINLGDTEELTINVSSMGSTGITNSVYMDGGDSNRESRTDSSTASTSGSPWY 483

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 484 HLRKDAIHFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 543

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 544 EAFCGVEAVEFRQKLKTVCENYYVAFHKQSMH 575

[Close]

BLAST of Spg020841 vs. NCBI nr
Match: XP_038895534.1 (syndetin isoform X2 [Benincasa hispida])

HSP 1 Score: 271.2 bits (692), Expect = 5.6e-69
Identity = 134/152 (88.16%), Postives = 143/152 (94.08%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MKQ EDN+++NLG+TEE   NVSS+G+TGI NSVYMDGGD NRESR DSSTASTSGSPWY
Sbjct: 239 MKQPEDNHDINLGDTEELTINVSSMGSTGITNSVYMDGGDSNRESRTDSSTASTSGSPWY 298

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 299 HLRKDAIHFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 358

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 359 EAFCGVEAVEFRQKLKTVCENYYVAFHKQSMH 390

[Close]

BLAST of Spg020841 vs. NCBI nr
Match: XP_008462106.1 (PREDICTED: syndetin [Cucumis melo])

HSP 1 Score: 259.6 bits (662), Expect = 1.7e-65
Identity = 127/152 (83.55%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MK +EDNY++ LG++EES  +VSS+G+TGI +S+YMD GD  RESR DSS ASTSGSPWY
Sbjct: 424 MKHQEDNYDIKLGDSEESTIDVSSMGSTGITHSIYMDEGDSIRESRTDSSAASTSGSPWY 483

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 484 HLRKDAIDFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 543

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Sbjct: 544 EAFCGVEAVEFRQKLKIVCENYYVAFHKQSMH 575

[Close]

BLAST of Spg020841 vs. ExPASy TrEMBL
Match: A0A6J1DJ46 (syndetin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.1e-70
Identity = 136/152 (89.47%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MKQ++D+Y LNLG+TEE  TNVSS+GTTGIMNSVYMD  DP+RESR DSSTASTSGSPWY
Sbjct: 423 MKQQDDSYVLNLGDTEELTTNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTSGSPWY 482

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 483 HLRKDAISFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 542

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 543 EAFCGVEAVEFRQKLKSVCENYYVAFHKQSMH 574

[Close]

BLAST of Spg020841 vs. ExPASy TrEMBL
Match: A0A6J1DF95 (syndetin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.1e-70
Identity = 136/152 (89.47%), Postives = 145/152 (95.39%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MKQ++D+Y LNLG+TEE  TNVSS+GTTGIMNSVYMD  DP+RESR DSSTASTSGSPWY
Sbjct: 423 MKQQDDSYVLNLGDTEELTTNVSSMGTTGIMNSVYMDDDDPDRESRMDSSTASTSGSPWY 482

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAISF+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 483 HLRKDAISFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 542

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK VCENYYVAFHKQSMH
Sbjct: 543 EAFCGVEAVEFRQKLKSVCENYYVAFHKQSMH 574

[Close]

BLAST of Spg020841 vs. ExPASy TrEMBL
Match: A0A5D3CVZ5 (Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00300 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.1e-66
Identity = 127/152 (83.55%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MK +EDNY++ LG++EES  +VSS+G+TGI +S+YMD GD  RESR DSS ASTSGSPWY
Sbjct: 454 MKHQEDNYDIKLGDSEESTIDVSSMGSTGITHSIYMDEGDSIRESRTDSSAASTSGSPWY 513

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 514 HLRKDAIDFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 573

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Sbjct: 574 EAFCGVEAVEFRQKLKIVCENYYVAFHKQSMH 605

[Close]

BLAST of Spg020841 vs. ExPASy TrEMBL
Match: A0A5A7VC68 (Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00950 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.1e-66
Identity = 127/152 (83.55%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MK +EDNY++ LG++EES  +VSS+G+TGI +S+YMD GD  RESR DSS ASTSGSPWY
Sbjct: 458 MKHQEDNYDIKLGDSEESTIDVSSMGSTGITHSIYMDEGDSIRESRTDSSAASTSGSPWY 517

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 518 HLRKDAIDFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 577

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Sbjct: 578 EAFCGVEAVEFRQKLKIVCENYYVAFHKQSMH 609

[Close]

BLAST of Spg020841 vs. ExPASy TrEMBL
Match: A0A1S3CG39 (syndetin OS=Cucumis melo OX=3656 GN=LOC103500532 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 8.1e-66
Identity = 127/152 (83.55%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MKQREDNYNLNLGETEESMTNVSSIGTTGIMNSVYMDGGDPNRESRADSSTASTSGSPWY 60
           MK +EDNY++ LG++EES  +VSS+G+TGI +S+YMD GD  RESR DSS ASTSGSPWY
Sbjct: 424 MKHQEDNYDIKLGDSEESTIDVSSMGSTGITHSIYMDEGDSIRESRTDSSAASTSGSPWY 483

Query: 61  HLKKDAISFISQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAG 120
           HL+KDAI F+SQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVF+LAG
Sbjct: 484 HLRKDAIDFVSQTLQRGRKNLWQLTTSRVSVLLSSAAVCSTSIHQFLKNYEDLNVFILAG 543

Query: 121 EAFCGVEAVEFRQKLKVVCENYYVAFHKQSMH 153
           EAFCGVEAVEFRQKLK+VCENYYVAFHKQSMH
Sbjct: 544 EAFCGVEAVEFRQKLKIVCENYYVAFHKQSMH 575

[Close]

BLAST of Spg020841 vs. TAIR 10
Match: AT2G27900.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). )

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-41
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 28  TGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTS 87
           +G  +SV +       ESR      S+S SPWY+L+K++ +F+S+TLQRGR+NLWQLTTS
Sbjct: 474 SGTSSSVQLASNIAIDESRNSEDRVSSSESPWYYLRKESAAFVSETLQRGRRNLWQLTTS 533

Query: 88  RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFH 147
           RVSVLLSS    STSIHQFLKNYEDL++F+LAGEAFCG E V+FR+KLK VCENY+ AFH
Sbjct: 534 RVSVLLSSPGASSTSIHQFLKNYEDLSIFILAGEAFCGFEVVDFREKLKGVCENYFTAFH 593

Query: 148 KQSMH 153
           +QSMH
Sbjct: 594 RQSMH 598

[Close]

BLAST of Spg020841 vs. TAIR 10
Match: AT2G27900.2 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-41
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = 0


Query: 28  TGIMNSVYMDGGDPNRESRADSSTASTSGSPWYHLKKDAISFISQTLQRGRKNLWQLTTS 87
           +G  +SV +       ESR      S+S SPWY+L+K++ +F+S+TLQRGR+NLWQLTTS
Sbjct: 474 SGTSSSVQLASNIAIDESRNSEDRVSSSESPWYYLRKESAAFVSETLQRGRRNLWQLTTS 533

Query: 88  RVSVLLSSAAVCSTSIHQFLKNYEDLNVFLLAGEAFCGVEAVEFRQKLKVVCENYYVAFH 147
           RVSVLLSS    STSIHQFLKNYEDL++F+LAGEAFCG E V+FR+KLK VCENY+ AFH
Sbjct: 534 RVSVLLSSPGASSTSIHQFLKNYEDLSIFILAGEAFCGFEVVDFREKLKGVCENYFTAFH 593

Query: 148 KQSMH 153
           +QSMH
Sbjct: 594 RQSMH 598

The following BLAST results are available for this feature:

BLAST of Spg020841 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152900.1	1.5e-69	89.47	syndetin isoform X1 [Momordica charantia]	[more]
XP_022152901.1	1.5e-69	89.47	syndetin isoform X2 [Momordica charantia]	[more]
XP_038895533.1	5.6e-69	88.16	syndetin isoform X1 [Benincasa hispida]	[more]
XP_038895534.1	5.6e-69	88.16	syndetin isoform X2 [Benincasa hispida]	[more]
XP_008462106.1	1.7e-65	83.55	PREDICTED: syndetin [Cucumis melo]	[more]

BLAST of Spg020841 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg020841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJ46	7.1e-70	89.47	syndetin isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1	[more]
A0A6J1DF95	7.1e-70	89.47	syndetin isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020518 PE=4 SV=1	[more]
A0A5D3CVZ5	8.1e-66	83.55	Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00300 PE=4 ...	[more]
A0A5A7VC68	8.1e-66	83.55	Syndetin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00950 PE=4 ...	[more]
A0A1S3CG39	8.1e-66	83.55	syndetin OS=Cucumis melo OX=3656 GN=LOC103500532 PE=4 SV=1	[more]

BLAST of Spg020841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27900.1	1.8e-41	64.00	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (Int...	[more]
AT2G27900.2	1.8e-41	64.00	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (Int...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..57
None	No IPR available	PANTHER	PTHR13258:SF4	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN-RELATED	coord: 33..151
IPR040047	Syndetin	PANTHER	PTHR13258	UNCHARACTERIZED	coord: 33..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020841.1	Spg020841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032456	endocytic recycling
biological_process	GO:0042147	retrograde transport, endosome to Golgi
cellular_component	GO:0005829	cytosol
cellular_component	GO:1990745	EARP complex