Spg020825 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020825
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Cysteinyl-tRNA synthetase
Location	scaffold10: 28411338 .. 28416485 (-)
RNA-Seq Expression	Spg020825
Synteny	Spg020825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGACCTTTCTTTCCAGTTCAGTCATTCTTTCTTCGCTTGTACCTATGTCGACCATCATTACAGACATCACGTCAGGATCTGATGTCTCCTTTGCCTGCTCAGAAGATGAAGTAGAATAGTCAAATAAAGGATTTTCCTGCATGACCATCCTGCCTTGGTTTGGCTCTACCATTTGAGTTCATATCATATTTGCAATGATAGAGGCTTGTTCTTCTTCTGATTTCTGGATTTCCTTGGAGCGTCCGCGAGTAACTGGTCCCACGTAGGAGTCGCTTGAAGTCTTGGAAGCAACTTTCTTGGATGCCATCGTTTCTTTAGAACTTTTTTCGTAGATCTTTAATGAGAGAAAGAGATGAAAGGTAGAGAGGTCCAAACTATTGAATTCTGAGAGCTTTCTTCAGAGTCTTCTGTATATGTGTAGTGGAGTACAAACTGTTAACACGAGATTTCAGGAGAGAAATTTGATTCGTGAAACGACTTCAAATATGTATTGATTTCTGTATATGTGTAGTGGAGTACAATCTCTAGTTACAATCCTTTGATGTTTTCTCTCACAAACTCAAGTTAGCTTGATCTACAGAGTCTTCAGGAAGCTTTAGTCTTCAGAGTCCTGAAGGTTTTTTCTTCAGAAGGATTTGAATTCTGAGAGCTTTCGCTTCTTCCTTTCTCCCTGCCCTCCCCAAATGAGAGGTCTTGCCTCCTATTTATAGAGTTTTCCAAAGGCCCTTTGTGGGCTTGGGCTTGGTTGCATTTGGGCCCATTCATAGGCTTGGACTTAAAATGCATTTGGGCCCATTCATGGGCTTGGTCTTATCAAATTTGGACTTCTGACCCAATTACATTATGGAATTCGGGTTTAAATTGAACCCAATTCAATCTATTTCATGAAATTAGCATATTTTAATTTCACGAACTTAGACAAATTATTTGAAGAAAAATTTCTATGCCAACAATCACAAACAAATAAAATAATCATTTACTTGCACGTAAAGATCGTGTCTTGAAGAGATGACCCAATTTGTTCAACGAGGTAGTCTTCTCTCTCTAAGAGATGACTTCATGATACGTGGTGAAGTCGTCTCTGAAAGAGGCAATCTCGTGTTTAAAACAACAATACCTAAAAATAAGTTAAAAAAATATTTTCCAAAAGTAAGTTTTAAAAATAATAATATAAAACTTCTAAAAAAAATAATAATAATATAAAATAATATTCCCCACCAGTCCACCCCTTACTTTCTTCCCCATATCTCCCTCTTTGCTACAATTGTATGTCGATAAAAGTGATAAAAGGGAAAAAAACGTCATTATAATAAATTGAAAAGAAAACTTCTCTCTTATGTTTTTATACATAGAAGACATAGACAAATATATATGATTAAATTATTGTTATTGTTTTAAATTAACTATAAATAATTAAATTCAAACTTTTATAAAAATAAAAATAAAAATACTATTATTTAATTCAAATTTAAAACTTCGTTTTATCCACCCAGTTCGACAATCCAACGAACCCAGTATATCAAAAGAGGGAAAAAAAAAAACAAGAAGAAATAGAGAGAGTAGCGTGTGCGTTGAGTTTATTTTTCTGCTAATTTTGTATGTTAATTAAATAAGACAATTGCGGATTTTTATTTTATATTTTATTTTATTATTTTTTACAACATTGGGGATCAATTTTGTAGGGTGATGGAAATTGGAAAGCATAGGAGGCAGTAGTGGGAGCTTCACTAAGATAGGTTCTTTTGGTCAGCACACAAATGATTATATTATGTGGGTGGAAAATAATGTATGAAACTACTATTGTATCCTTTTATTATCTTACATGGTTCAAAATTCCAAGAAATTTACAGTTGGAGAGTAAGTTGAGTTCTGCCAACTTAAGCATAATTTGATTAGTTAGATATTATATTATAACATAACAATTGCAACAATTAAAAGAAAAAAGACAGTGATTTGTGATCCACCACAAAGGCATTGGGCTTCAATGATTCCAATATCTTTTTGGAAGTTGTGCCTTTAGAACTTCTGGGCCAAAGTTTGAGAGGAAAATTTCAATCTTTGACATATTTGGTTCAAAGTTAGAACTCTTCATTTGTCCACCCATCTTTTTATAAGTTTTGCCAAAGCGAGCATAGCTAAGTGGTAATTGACATGTACTTTCGACCAAGAGGTCAGAGGTTCGAATCTCCCCACCCCCAAATATTGATATACTAAAAAAAAAAAATCTTTTTACAAGTTTTTCTTTTTGGTTGAATCTTTTCAATATTGGAAATTTTAACTTTAACCCCTGTTTAGAATCCTTAAATTTGAGATGAATTTCAAATTAAATTTGCTGATTTCAAATCTTTTTTTTTTTTAATCCATTCCAAATAGCTCGAATTTGGCAGAATTTTAAACTTAAAAAATTTGATTCCAATTTTAACCCTCAACTCTTTTTCTTTTATTCGATAAGCTTCCCATCATATCGACTCTCACTACCTCTTCCCAGACTCAAAGCCATTTGACGCAAGCACACAGTCAAGGTTATAGATTTCTATTTTATTTGCTCTTGTATTTTGCCATTTTTAAAAAACTTATAATGGTAATTATAATCTTTTCAATGTAGCTTTACGATTCCAACCAGATTTTATAGTCAAGCAAACTAAATCAAAGGTAAGTTTTTTTTCCCTTTATGTGTTCATCTTTTTAAACTATTTTTTTCCGTATTATTTTCTTTTTGATCAGTGAACTGATATGGGTACTGTTCAATTTTGTGTTCTGTGTAATCTTTTTCATTCTTTTTTAATTTTTTTTTATCAACTCTGTAATCTGTTTTCTATTTTGATAGTATCTTTTGATAATTCATACTGTTTTTTTTAAATAAATTTGTTTGATTAATCAAAATTTGTAGTTTTATTGCATTTGCGGGAAGTAATTTGTCCTCTAATTTTGAAATATTTTGAAATTCCATTCAAAATCCATATCTTCAAATGTTGGTTTGTTATTCTATTTTGATTTATCAATGGATTCTGTAGTAAGTCAAGTCAGTAGTTAGGCTCAGTTTTTAACCTATTTATATTAGATATGTATTCCAAAAATTAATTTAATATAGAGCATCTCATTTTAATTAATATATAATAATATATATAGGAAGAAAAAAAGGATGAGAGTAGGATTATTGTAATGTATTTTTATTAAAAATGTAACCCCAAAGCCGCTAATAATCTAGGCAACTTTCGAAACAATTTCTTTCGAGGATTAGTTCGATTTTTTTTTCTTCGTTTGCATAAAGATATTTGTGTTTTTTTTTTTAAAATTTTCTTATTTACAATAATGAAGACATTTACAAATTTTAACTTAATAAACAAATTTATTTTTATCAATTGTATGTTTCATGGTTGTATGTGTTTAATACTGTTATTTGACATTAAAATATTTTGCAATTGATTAAAATTATTTCTTGCAAATTTATAGAGCATAGCAGTAAAATGTTATACTTTCTTTTCATTTATCGTGAGCATCCAAATAAGAGATTTTAATTTTAATGATTTCAAATCAATTTGGTTCCAAATGCAAATAGAAATTTGAAATAATTTCCATCTTTTAAAATCCTAGAATTTAAATTCATTTCTTGTCAATTCCATGCACCAAACAAAGCCTAAGATTAGTTTTAAAACTCTTAAGTTATTTGAAACTTAAGTTCAACTTTACAATTAATTGAGTCCGCTTAAATACATTAAATATGACCTATTTGTAATTTATTACTTCAGTAGAACGTTGCATGTGCACTTTTAACTGCATTATATTAAAAGGAAAATTTGCGCGGTGACATCAGCAAAAGAACATTTTCCATTATTCTGAAAAGGTAGGTCAAATTTTAGTGTCATCCGTACAAATTTTCCATATTAAAAATGCACTCGCCACTTTCACTAATGGTCATGCTAGTTTGAGAAGGACAACATAGATGATGGAAAGTGGATCACAAAATGAGTAGATGATAAATATTATCCCTTTAAATAGGTAAAGAAGTTGGTTGTATATTTGTACTATGCTAATAATGCTCTCAAATATTTTCTTAAAAAATAATATTTTCATATTTTTAATAATTTAAAAACTGAAGTAGACCCTGTAGTTGTCTAGATTTATTTGTCATTCTTTTTTTCTTTTGAAAAGATTTATTTTTCATTCTTTTAAATTAACTATAAGTTACGAAATTTAAAATGTCAGTTAATTAAATTAGAATATGATATTTGAATACGAAAAAAAAAAAGAATAATACAAATCAGGAAGGGCTGAGAGAAAAAAAATCAGCCCAATCAATCCACCAAAGCCCAATAACTCAACTCAGCCTATCAAATAAATTAAAAATAAACAAAAGAAAGAGGAAAACCTAGTAACGTACCTACCCTTCATCTCTCACGTGCTCCTCCTTCGCCGTTCTCCCCATCCCTCTCTCTCAAGTCTCACTCTTCTCGCCGTCGCCGACGCCGGCGCCGGCTCCCCCTTCCTTTTAGCAGCTCTCGCCGCCCCGCCATTTATCTCCTGCCCGTGCCGCCGCCGCCGTCCCTCTCCTGATCGTGCTGACGCCGCCGCCTTCCTCCTAGCAGTTTGCACTGTTTTTCTATCTCTTGTTACTGGTATGCTCTCAATCTCCATCTATGTCTTTCTTCTCGCTTCCCGATTGAATCGACCGACTAGAACAACTCAATTAGGACTTGCGAATGAAAGTGATGTGGAGTTGCTTGACAGAACAGCCTCACCATTGATGAGGTTGTAGATTAAAATCATGGCAGTGAAGAAGACGAATTGATGCGTTTCAAATAAATCTATGTTAATTCTGAATACAATTGACACGTGAATGTAAATGTTAAACTGACGAAATTAAAAGCGCAACCTAAAGTTTGAAAATTTTCTTCTTTGGTATCTCATCCAGATTCAGTTTCTTGCCTGCCGTCGGAATGGCGAAGGAGGAATTTAGGGTTTACAATTCGATGACGCAGCAGAAGGAAATCTTCACGCCGAAGGAGCCTGGTAAGGTTGGCATGTACGTCTGTGGCATCACGGCCTATGATTTCAGCCACATTGGTCATGCTCGCGCCGCCGTCAACTTTGACGTCCTCTACAGGTTTGCTGATTTCTGCATTCGTATCTCTATACGCAAGTGA

mRNA sequence

ATGCTGACCTTTCTTTCCAGTTCAGTCATTCTTTCTTCGCTTGTACCTATGTCGACCATCATTACAGACATCACGTCAGGATCTGATGTCTCCTTTGCCTGCTCAGAAGATGAAAGGCTTGTTCTTCTTCTGATTTCTGGATTTCCTTGGAGCGTCCGCGATCTCACTCTTCTCGCCGTCGCCGACGCCGGCGCCGGCTCCCCCTTCCTTTTAGCAGCTCTCGCCGCCCCGCCATTTATCTCCTGCCCGTGCCGCCGCCGCCGTCCCTCTCCTGATCGTGCTGACGCCGCCGCCTTCCTCCTAGCAGTTTGCACTGTTTTTCTATCTCTTGTTACTGGTATGCTCTCAATCTCCATCTATGTCTTTCTTCTCGCTTCCCGATTGAATCGACCGACTAGAACAACTCAATTAGGACTTGCGAATGAAAGTGATGTGGAGTTGCTTGACAGAACAGCCTCACCATTGATGAGATTCAGTTTCTTGCCTGCCGTCGGAATGGCGAAGGAGGAATTTAGGGTTTACAATTCGATGACGCAGCAGAAGGAAATCTTCACGCCGAAGGAGCCTGGTAAGGTTGGCATGTACGTCTGTGGCATCACGGCCTATGATTTCAGCCACATTGGTCATGCTCGCGCCGCCGTCAACTTTGACGTCCTCTACAGGTTTGCTGATTTCTGCATTCGTATCTCTATACGCAAGTGA

Coding sequence (CDS)

ATGCTGACCTTTCTTTCCAGTTCAGTCATTCTTTCTTCGCTTGTACCTATGTCGACCATCATTACAGACATCACGTCAGGATCTGATGTCTCCTTTGCCTGCTCAGAAGATGAAAGGCTTGTTCTTCTTCTGATTTCTGGATTTCCTTGGAGCGTCCGCGATCTCACTCTTCTCGCCGTCGCCGACGCCGGCGCCGGCTCCCCCTTCCTTTTAGCAGCTCTCGCCGCCCCGCCATTTATCTCCTGCCCGTGCCGCCGCCGCCGTCCCTCTCCTGATCGTGCTGACGCCGCCGCCTTCCTCCTAGCAGTTTGCACTGTTTTTCTATCTCTTGTTACTGGTATGCTCTCAATCTCCATCTATGTCTTTCTTCTCGCTTCCCGATTGAATCGACCGACTAGAACAACTCAATTAGGACTTGCGAATGAAAGTGATGTGGAGTTGCTTGACAGAACAGCCTCACCATTGATGAGATTCAGTTTCTTGCCTGCCGTCGGAATGGCGAAGGAGGAATTTAGGGTTTACAATTCGATGACGCAGCAGAAGGAAATCTTCACGCCGAAGGAGCCTGGTAAGGTTGGCATGTACGTCTGTGGCATCACGGCCTATGATTTCAGCCACATTGGTCATGCTCGCGCCGCCGTCAACTTTGACGTCCTCTACAGGTTTGCTGATTTCTGCATTCGTATCTCTATACGCAAGTGA

Protein sequence

MLTFLSSSVILSSLVPMSTIITDITSGSDVSFACSEDERLVLLLISGFPWSVRDLTLLAVADAGAGSPFLLAALAAPPFISCPCRRRRPSPDRADAAAFLLAVCTVFLSLVTGMLSISIYVFLLASRLNRPTRTTQLGLANESDVELLDRTASPLMRFSFLPAVGMAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADFCIRISIRK

Homology

[Close]

BLAST of Spg020825 vs. NCBI nr
Match: XP_038907150.1 (cysteine--tRNA ligase 2, cytoplasmic [Benincasa hispida])

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-23
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           MAKEEFRVYNSMTQQKE+FTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRY 57

[Close]

BLAST of Spg020825 vs. NCBI nr
Match: XP_022152314.1 (cysteine--tRNA ligase 2, cytoplasmic [Momordica charantia])

HSP 1 Score: 118.6 bits (296), Expect = 7.1e-23
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADF 225
           MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+  +
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRYLKY 60

[Close]

BLAST of Spg020825 vs. NCBI nr
Match: KGN51154.2 (hypothetical protein Csa_023165 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-22
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRY 57

[Close]

BLAST of Spg020825 vs. NCBI nr
Match: XP_008465226.2 (PREDICTED: LOW QUALITY PROTEIN: cysteine--tRNA ligase 2, cytoplasmic-like [Cucumis melo])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-22
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRY 57

[Close]

BLAST of Spg020825 vs. NCBI nr
Match: XP_004150192.2 (LOW QUALITY PROTEIN: cysteine--tRNA ligase 2, cytoplasmic [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-22
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRY 57

[Close]

BLAST of Spg020825 vs. ExPASy Swiss-Prot
Match: B3LFA4 (Cysteine--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At5g38830 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.4e-19
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 168 KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           K E ++YN+MTQQKE+  P  PGK+G+YVCGITAYDFSHIGHARAAV+FDVLYR+
Sbjct: 5   KMELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRY 59

[Close]

BLAST of Spg020825 vs. ExPASy Swiss-Prot
Match: Q9LYL3 (Cysteine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At3g56300 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 168 KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           K +  +YN+MTQ KE++ P  PGK+G+YVCGITAYD+SHIGHARAAV+FD+LYR+
Sbjct: 8   KPDLTLYNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLLYRY 62

[Close]

BLAST of Spg020825 vs. ExPASy Swiss-Prot
Match: Q3A8C9 (Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1) OX=338963 GN=cysS PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.6e-16
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 172 RVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADF 226
           RVYN+MT +KE F P +PGKVGMYVCG+T YD+ HIGHARA V FD++YR+  F
Sbjct: 4   RVYNTMTGRKEEFEPLQPGKVGMYVCGVTVYDYCHIGHARANVVFDIIYRYLQF 57

[Close]

BLAST of Spg020825 vs. ExPASy Swiss-Prot
Match: Q72BQ5 (Cysteine--tRNA ligase OS=Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=cysS PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.3e-15
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 172 RVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           ++YNS++++KE+FTP  PGKV MYVCGITAYD  HIGHAR+AV FDVL R+
Sbjct: 2   QIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRY 52

[Close]

BLAST of Spg020825 vs. ExPASy Swiss-Prot
Match: A1VDQ5 (Cysteine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) OX=391774 GN=cysS PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.3e-15
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 172 RVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           ++YNS++++KE+FTP  PGKV MYVCGITAYD  HIGHAR+AV FDVL R+
Sbjct: 2   QIYNSLSRRKELFTPAVPGKVNMYVCGITAYDLCHIGHARSAVVFDVLVRY 52

[Close]

BLAST of Spg020825 vs. ExPASy TrEMBL
Match: A0A6J1DFN5 (Cysteinyl-tRNA synthetase OS=Momordica charantia OX=3673 GN=LOC111020061 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-23
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRFADF 225
           MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+  +
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRYLKY 60

[Close]

BLAST of Spg020825 vs. ExPASy TrEMBL
Match: A0A5D3CTE4 (Cysteinyl-tRNA synthetase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00410 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-23
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRY 57

[Close]

BLAST of Spg020825 vs. ExPASy TrEMBL
Match: A0A6J1I7Y5 (Cysteinyl-tRNA synthetase OS=Cucurbita maxima OX=3661 GN=LOC111472181 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-23
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRY 57

[Close]

BLAST of Spg020825 vs. ExPASy TrEMBL
Match: A0A6J1EQN5 (Cysteinyl-tRNA synthetase OS=Cucurbita moschata OX=3662 GN=LOC111436590 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-23
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRY 57

[Close]

BLAST of Spg020825 vs. ExPASy TrEMBL
Match: A0A1S3CNS9 (Cysteinyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103502879 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.8e-23
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 166 MAKEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           MAKEEFRVYNSMTQQKE+FT KEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYR+
Sbjct: 1   MAKEEFRVYNSMTQQKEVFTTKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRY 57

[Close]

BLAST of Spg020825 vs. TAIR 10
Match: AT5G38830.1 (Cysteinyl-tRNA synthetase, class Ia family protein )

HSP 1 Score: 95.5 bits (236), Expect = 6.0e-20
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 168 KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           K E ++YN+MTQQKE+  P  PGK+G+YVCGITAYDFSHIGHARAAV+FDVLYR+
Sbjct: 5   KMELKLYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRY 59

[Close]

BLAST of Spg020825 vs. TAIR 10
Match: AT3G56300.1 (Cysteinyl-tRNA synthetase, class Ia family protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-18
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 168 KEEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           K +  +YN+MTQ KE++ P  PGK+G+YVCGITAYD+SHIGHARAAV+FD+LYR+
Sbjct: 8   KPDLTLYNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLLYRY 62

[Close]

BLAST of Spg020825 vs. TAIR 10
Match: AT2G31170.1 (Cysteinyl-tRNA synthetase, class Ia family protein )

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-15
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 169 EEFRVYNSMTQQKEIFTPKEPGKVGMYVCGITAYDFSHIGHARAAVNFDVLYRF 223
           +E  ++N+M+++KE+F PK  GKVGMYVCG+TAYD SHIGHAR  V FDVL R+
Sbjct: 63  KELWLHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRY 116

The following BLAST results are available for this feature:

BLAST of Spg020825 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038907150.1	1.4e-23	96.49	cysteine--tRNA ligase 2, cytoplasmic [Benincasa hispida]	[more]
XP_022152314.1	7.1e-23	90.00	cysteine--tRNA ligase 2, cytoplasmic [Momordica charantia]	[more]
KGN51154.2	1.2e-22	94.74	hypothetical protein Csa_023165 [Cucumis sativus]	[more]
XP_008465226.2	1.2e-22	94.74	PREDICTED: LOW QUALITY PROTEIN: cysteine--tRNA ligase 2, cytoplasmic-like [Cucum...	[more]
XP_004150192.2	1.2e-22	94.74	LOW QUALITY PROTEIN: cysteine--tRNA ligase 2, cytoplasmic [Cucumis sativus]	[more]

BLAST of Spg020825 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3LFA4	8.4e-19	74.55	Cysteine--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At5g3883...	[more]
Q9LYL3	2.7e-17	67.27	Cysteine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At3g5630...	[more]
Q3A8C9	6.6e-16	66.67	Cysteine--tRNA ligase OS=Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 ...	[more]
Q72BQ5	7.3e-15	68.63	Cysteine--tRNA ligase OS=Desulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / N...	[more]
A1VDQ5	7.3e-15	68.63	Cysteine--tRNA ligase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) OX=...	[more]

BLAST of Spg020825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFN5	3.4e-23	90.00	Cysteinyl-tRNA synthetase OS=Momordica charantia OX=3673 GN=LOC111020061 PE=3 SV...	[more]
A0A5D3CTE4	5.8e-23	94.74	Cysteinyl-tRNA synthetase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1I7Y5	5.8e-23	94.74	Cysteinyl-tRNA synthetase OS=Cucurbita maxima OX=3661 GN=LOC111472181 PE=3 SV=1	[more]
A0A6J1EQN5	5.8e-23	94.74	Cysteinyl-tRNA synthetase OS=Cucurbita moschata OX=3662 GN=LOC111436590 PE=3 SV=...	[more]
A0A1S3CNS9	5.8e-23	94.74	Cysteinyl-tRNA synthetase OS=Cucumis melo OX=3656 GN=LOC103502879 PE=3 SV=1	[more]

BLAST of Spg020825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38830.1	6.0e-20	74.55	Cysteinyl-tRNA synthetase, class Ia family protein	[more]
AT3G56300.1	1.9e-18	67.27	Cysteinyl-tRNA synthetase, class Ia family protein	[more]
AT2G31170.1	3.4e-15	62.96	Cysteinyl-tRNA synthetase, class Ia family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032678	tRNA synthetases class I, catalytic domain	PFAM	PF01406	tRNA-synt_1e	coord: 184..222 e-value: 7.7E-11 score: 41.9
IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	GENE3D	3.40.50.620	HUPs	coord: 156..227 e-value: 4.6E-18 score: 67.0
IPR024909	Cysteinyl-tRNA synthetase/mycothiol ligase	PANTHER	PTHR10890	CYSTEINYL-TRNA SYNTHETASE	coord: 168..222
None	No IPR available	PANTHER	PTHR10890:SF29	BNAA05G14150D PROTEIN	coord: 168..222
None	No IPR available	SUPERFAMILY	52374	Nucleotidylyl transferase	coord: 170..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020825.1	Spg020825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006423	cysteinyl-tRNA aminoacylation
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004817	cysteine-tRNA ligase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0046872	metal ion binding