Spg020080 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020080
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Locationscaffold1: 26900301 .. 26902826 (-)
RNA-Seq ExpressionSpg020080
SyntenySpg020080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCTTCGCCTGCAATCGACGATGTCGTTGCCGCATGCCTCATGGGATATCGTCACGCTCTGTGTCACGGTCATGCTTGTCCAGGACATGTTGCCCATGGCCGCATGCCCATGTCAACCCATTCCCTTAATGCTTTCGTTACATGTATTTCCTTTTATAGCTTATTTATTTTCCCTTGCATTTTTCAAGTGTCTGACTCCTCGTGATTTTGATGTTCAAGCCTGCCAAGGCTAAAATGCTTAAGGGGGGTACGACTAGTTGTCAATCCTTCCTACCCGGAGTTGTTCGCTATCAAGCTGTTGTTGTCCATTTGCTTACTTGATTGCCCGCAACTAATATTCTTACAAAATGTTTTCAACCGTTTTCCAAAGCTTTTTCTCTAACCCCGTTTTCTAAAACCGTTTTCCAAGAATGGGGGTGGAGGTTGCGAAATAGGCACTTTGTGCCACCGGCGATCTGAAATCGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCGCTTGCGAGTCCCGAAAGAGTGCGATTGTGACAGTTGGTATCAAAGCATTGTTGGCTCCTAAAGTTGGAATCTGAAATCATGTCGTCAACAAAGCAGTTGGGCAAGACCCATGTTGAACGACTTGTGGAAATCGAAGAGTAGCTGCTCTATTTGAGAGAAGTCCCAGATTCAGTTCGATTCTTGGGATCTCGCCTGGAAGAGATTGCGACCAAGACGGACAAGATAGATGCGGTATCTGGCCGCTAGGATGGGATGCCCATCCAAGAGTTGATAATGAGGGTTGAGAACCTCGAAGGAAAAGCTACAAGACCTAGTAGCTTCGAGCGTGGGGACAACTTGACGGGCTCTGTTGCCCAGATGGAGGAGCGTGTCGACGACTTAGACAGCTCCCAAAAAGCAATAGCTCAGATGGTCACAGAATTGTCTGAAGATGTGAAAACAACCCTCGATGTCGTCAGGACAGAAGTGGCGGATTTGAGCGCTAGACTAAACCTCACCATTAGAGCGTTGGGAAACCAAGCCCCGGTAGGGGGTGCGGTCCAGTTTAACAAACTGAAGGTCCCTGAACCGAAACCCTTCTGTGGGGTTCGAGACGCTAAAGCCCTGGAGAACTTTATCTTCGACTTGGAACAGTACTTCAGGGCCACAAGCACAACAACGGAAGAATCGAAAAATCACCTTGGCGACCATGCATCTGGCAGATGATGCCAAGTTATGGTGGACGTGCTACTATAGGGATGCTCAAGAAGGTCGATGTGTCATTGACACATGGGAAAGATTGAAACAAGAGTTACGTTTGCAATTCTTCCCAAAGAATGTTGAGATTTTGGCGCGACGTAAGCTGCGTGAGTTGAAACACACGGGTACTATCCGAGAGTATTTCAAACAGTTTTCTGGATTAATGTTGGACATACGAGATATGTCAGAGAAAGATAAGGTCTTCTGTTTTATAGAAGAGTTGAAATTGTGGGCGAAGTCCAAGGATTATGAACAGAGGTACAGTCGCTATCAGACGCTTATGCAGCTACAGAACGTTTGTTCGATCTTAGCAATGATCAGCCCTAGGATCAGAAATGGAACCAGGCTTCTTTGAGTGGAGGAAGTAAACCCATGCGATCTAGCTCTCCCAAGAGTGGGGGATGAGACAGAAACAGAGGAAGTAATTGTAACCCCTCCCAACCAAGAGGCGGGAACTCGTATCGAGGATCGAATCAGCAGCCTTATAACGACAAGCCCCTTTATTGGTATATTTGTAAGGGGCCACATTGAGCATTCCAATGGCCAAATCGAACCGCCTTCAACGCTTTTCAGGCCTCGTTGACTGGCAACGCGGGACCAGAGACCGAAACTTCTAAGACTGCCTCGACGAATGAGTCGAATGGGGATAACCCTCGCATGGGAGCATTGAAATTCCTATCTGCCCTCCAGAAGAAGTCTGAAGGGGCCAAAGAGCCGATAGAACGTGGTCTCATGTATGTTGAAGCGTGGGTCAACCAGAGGCAGGCCAAGAGCACAATGGTCGACTCTGGTGCCACCCACAACTTTATGATCGAAACTAAAGCACGACGATTGAACCTAAGATGGGACAAAGATTCAGGAAAGATGAAAGCGGTGAACTCAGCCGCCCTACCTATCATGGGGATTGCTAAGAGAGCGATAGTTAAGCTGGGGGCTTGGAGTGGTCAGACAGATTTCGTGATTGTAAAAATGGATGATTTTGACGTGGTGTTGGGAATGTGAAGGAGTGTATGACACTCGAGTGGAAGCGTTAGCGGATCTTAGGCACCAATTTTCATTAATTTCATTGATTAAAAGCATGCTTAAATAAGAACGAAAACAGAGGATTGAAGAACTTAACTTTGAAGCTTCAATTCGTGAGTTCTCTTGGACGTTTCTCCACACGATCACTTCATGGACGACCACCGAGATCTTCCCCGCTATTCTCCAGCCTTAGAACAGGCTTGTGGGAACCCGAGCATGATGAAATCGAAAAGAGAAAAGATGAGAGAATAA

mRNA sequence

ATGTCGCTTCGCCTGCAATCGACGATGTCGTTGCCGCATGCCTCATGGGATATCGTCACGCTCTGTGTCACGGTCATGCTTGTCCAGGACATGTTGCCCATGGCCGCATGCCCATGTCAACCCATTCCCTTAATGCTTTCGTTACATCCTGCCAAGGCTAAAATGCTTAAGGGGGGTACGACTAGTTGTCAATCCTTCCTACCCGGAGTTGTTCGCTATCAAGCTGTTAATGGGGGTGGAGGTTGCGAAATAGGCACTTTGTGCCACCGGCGATCTGAAATCGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCGCTTGCGAGTCCCGAAAGAGTGCGATTGTGACAGTTGGTATCAAAGCATTGTTGGCTCCTAAAGATGGGATGCCCATCCAAGAGTTGATAATGAGGGTTGAGAACCTCGAAGGAAAAGCTACAAGACCTAGTAGCTTCGAGCGTGGGGACAACTTGACGGGCTCTGTTGCCCAGATGGAGGAGCGTGTCGACGACTTAGACAGCTCCCAAAAAGCAATAGCTCAGATGGTCACAGAATTGTCTGAAGATGAAGTAAACCCATGCGATCTAGCTCTCCCAAGAGTGGGGGATGAGACAGAAACAGAGGAAGTAATTGTAACCCCTCCCAACCAAGAGGCGGGAACTCGTATCGAGGATCGAATCAGCAGCCTTATAACGACAAGCCCCTTTATTGTTCTCTTGGACGTTTCTCCACACGATCACTTCATGGACGACCACCGAGATCTTCCCCGCTATTCTCCAGCCTTAGAACAGGCTTGTGGGAACCCGAGCATGATGAAATCGAAAAGAGAAAAGATGAGAGAATAA

Coding sequence (CDS)

ATGTCGCTTCGCCTGCAATCGACGATGTCGTTGCCGCATGCCTCATGGGATATCGTCACGCTCTGTGTCACGGTCATGCTTGTCCAGGACATGTTGCCCATGGCCGCATGCCCATGTCAACCCATTCCCTTAATGCTTTCGTTACATCCTGCCAAGGCTAAAATGCTTAAGGGGGGTACGACTAGTTGTCAATCCTTCCTACCCGGAGTTGTTCGCTATCAAGCTGTTAATGGGGGTGGAGGTTGCGAAATAGGCACTTTGTGCCACCGGCGATCTGAAATCGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCGCTTGCGAGTCCCGAAAGAGTGCGATTGTGACAGTTGGTATCAAAGCATTGTTGGCTCCTAAAGATGGGATGCCCATCCAAGAGTTGATAATGAGGGTTGAGAACCTCGAAGGAAAAGCTACAAGACCTAGTAGCTTCGAGCGTGGGGACAACTTGACGGGCTCTGTTGCCCAGATGGAGGAGCGTGTCGACGACTTAGACAGCTCCCAAAAAGCAATAGCTCAGATGGTCACAGAATTGTCTGAAGATGAAGTAAACCCATGCGATCTAGCTCTCCCAAGAGTGGGGGATGAGACAGAAACAGAGGAAGTAATTGTAACCCCTCCCAACCAAGAGGCGGGAACTCGTATCGAGGATCGAATCAGCAGCCTTATAACGACAAGCCCCTTTATTGTTCTCTTGGACGTTTCTCCACACGATCACTTCATGGACGACCACCGAGATCTTCCCCGCTATTCTCCAGCCTTAGAACAGGCTTGTGGGAACCCGAGCATGATGAAATCGAAAAGAGAAAAGATGAGAGAATAA

Protein sequence

MSLRLQSTMSLPHASWDIVTLCVTVMLVQDMLPMAACPCQPIPLMLSLHPAKAKMLKGGTTSCQSFLPGVVRYQAVNGGGGCEIGTLCHRRSEIELADLLVGESKCRTIACESRKSAIVTVGIKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVAQMEERVDDLDSSQKAIAQMVTELSEDEVNPCDLALPRVGDETETEEVIVTPPNQEAGTRIEDRISSLITTSPFIVLLDVSPHDHFMDDHRDLPRYSPALEQACGNPSMMKSKREKMRE
Homology
[Close]
BLAST of Spg020080 vs. NCBI nr
Match: KAA0041962.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-09
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 123 IKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVAQMEERVDDLDSSQKAI 182
           I A+    +G+PIQ+L+ RV+ LEG   R  S ERGD+ TGSVA +EERV +LDSSQK +
Sbjct: 49  IDAIAGRVEGLPIQKLLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKKL 108

Query: 183 AQMVTELSEDEVNPCDLALPRVGD 207
            +M+  +SED +   D+    + D
Sbjct: 109 LEMINYMSEDFLATLDVVRNEIAD 132

[Close]
BLAST of Spg020080 vs. NCBI nr
Match: KAA0062302.1 (uncharacterized protein E6C27_scaffold154G00490 [Cucumis melo var. makuwa] >TYK26675.1 uncharacterized protein E5676_scaffold313G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 74.7 bits (182), Expect = 1.4e-09
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 0 

Query: 112 ESRKSAIV--TVGIKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVAQME 171
           ESR   I   T  I A++   +G+PIQEL+ RV  L+G   R SS ERGD+  GSVA +E
Sbjct: 15  ESRLEEIAEKTDMIDAIVGRVEGLPIQELLARVNTLKGNVGRTSSHERGDSSMGSVAHIE 74

Query: 172 ERVDDLDSSQKAIAQMVTELSEDEVNPCDLALPRVGDETETEEVIVTPPNQE--AGTRIE 231
           ERV +LDSSQK + +M+ ++ ED     D+    + D     ++ +     +  AG  I 
Sbjct: 75  ERVQELDSSQKTLLEMMNDMFEDFRATLDVVRNEIADMNARLDLTIRAMENQALAGGAIP 134

Query: 232 DRISSLITTSPFIVLLDVSPHDHFMDD 255
             I  +    PF    DV   ++++ D
Sbjct: 135 VSIVKIPKPKPFCGARDVKALENYIFD 161

[Close]
BLAST of Spg020080 vs. NCBI nr
Match: KAA0066681.1 (uncharacterized protein E6C27_scaffold271G00090 [Cucumis melo var. makuwa] >TYK27831.1 uncharacterized protein E5676_scaffold384G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-09
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 112 ESRKSAIV--TVGIKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVAQME 171
           ESR   I   T  I A+    +G+PIQEL+ RV+ LEG   R  S ERGD+ TGSVA +E
Sbjct: 15  ESRLEEIAEKTDMIDAVAGRVEGLPIQELLARVDTLEGTVGRTGSHERGDSSTGSVAHIE 74

Query: 172 ERVDDLDSSQKAIAQMVTELSED 193
           ERV +LDSSQK + +M+   SED
Sbjct: 75  ERVKELDSSQKTLLEMINGTSED 97

[Close]
BLAST of Spg020080 vs. NCBI nr
Match: KAA0049646.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK08905.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 4.1e-09
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 0 

Query: 123 IKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVAQMEERVDDLDSSQKAI 182
           I A+ A  + +PIQEL+ RV+ LEG   R  ++E GD+L+G VA MEERV++LDSSQK +
Sbjct: 28  IDAVAARVERLPIQELLARVDTLEGNIGRTVNYEYGDSLSGFVAHMEERVNELDSSQKTL 87

Query: 183 AQMVTELSEDEVNPCDLALPRVGDETETEEVIVTPPNQEAGTR 226
            +M+ ++SED     D+    + D      + V     +A TR
Sbjct: 88  LEMINDMSEDFRATLDIIRNEIADVNSRLNLTVRAIANQAQTR 130

[Close]
BLAST of Spg020080 vs. NCBI nr
Match: KAA0054039.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYJ96884.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-09
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 0 

Query: 107 RTIACESRKSAIVTVGIKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVA 166
           R +     K A  T  I A+    +G+PIQ L+ RV+ LEG A R  S ERG++LTGSVA
Sbjct: 33  RFLESRLEKFAEKTDMIDAVAGRVEGLPIQGLLARVDTLEGTAGRTGSHERGNSLTGSVA 92

Query: 167 QMEERVDDLDSSQKAIAQMVTELSEDEVNPCDLALPRVGD 207
            +EERV +LD+SQK + +M+ ++ ED     D+    + D
Sbjct: 93  HIEERVQELDNSQKTLLEMINDMLEDFRATLDVVRNEIAD 132

[Close]
BLAST of Spg020080 vs. ExPASy TrEMBL
Match: A0A5A7TEV3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001730 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-10
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 0 

Query: 123 IKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVAQMEERVDDLDSSQKAI 182
           I A+    +G+PIQ+L+ RV+ LEG   R  S ERGD+ TGSVA +EERV +LDSSQK +
Sbjct: 49  IDAIAGRVEGLPIQKLLARVDTLEGTVGRTGSHERGDSSTGSVAHIEERVQELDSSQKKL 108

Query: 183 AQMVTELSEDEVNPCDLALPRVGD 207
            +M+  +SED +   D+    + D
Sbjct: 109 LEMINYMSEDFLATLDVVRNEIAD 132

[Close]
BLAST of Spg020080 vs. ExPASy TrEMBL
Match: A0A5D3DTJ0 (Asp_protease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003310 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.9e-10
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 0 

Query: 112 ESRKSAIV--TVGIKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVAQME 171
           ESR   I   T  I A++   +G+PIQEL+ RV  L+G   R SS ERGD+  GSVA +E
Sbjct: 15  ESRLEEIAEKTDMIDAIVGRVEGLPIQELLARVNTLKGNVGRTSSHERGDSSMGSVAHIE 74

Query: 172 ERVDDLDSSQKAIAQMVTELSEDEVNPCDLALPRVGDETETEEVIVTPPNQE--AGTRIE 231
           ERV +LDSSQK + +M+ ++ ED     D+    + D     ++ +     +  AG  I 
Sbjct: 75  ERVQELDSSQKTLLEMMNDMFEDFRATLDVVRNEIADMNARLDLTIRAMENQALAGGAIP 134

Query: 232 DRISSLITTSPFIVLLDVSPHDHFMDD 255
             I  +    PF    DV   ++++ D
Sbjct: 135 VSIVKIPKPKPFCGARDVKALENYIFD 161

[Close]
BLAST of Spg020080 vs. ExPASy TrEMBL
Match: A0A5D3DVV7 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00030 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 112 ESRKSAIV--TVGIKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVAQME 171
           ESR   I   T  I A+    +G+PIQEL+ RV+ LEG   R  S ERGD+ TGSVA +E
Sbjct: 15  ESRLEEIAEKTDMIDAVAGRVEGLPIQELLARVDTLEGTVGRTGSHERGDSSTGSVAHIE 74

Query: 172 ERVDDLDSSQKAIAQMVTELSED 193
           ERV +LDSSQK + +M+   SED
Sbjct: 75  ERVKELDSSQKTLLEMINGTSED 97

[Close]
BLAST of Spg020080 vs. ExPASy TrEMBL
Match: A0A5A7U668 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold383G00130 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.0e-09
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 0 

Query: 123 IKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVAQMEERVDDLDSSQKAI 182
           I A+ A  + +PIQEL+ RV+ LEG   R  ++E GD+L+G VA MEERV++LDSSQK +
Sbjct: 28  IDAVAARVERLPIQELLARVDTLEGNIGRTVNYEYGDSLSGFVAHMEERVNELDSSQKTL 87

Query: 183 AQMVTELSEDEVNPCDLALPRVGDETETEEVIVTPPNQEAGTR 226
            +M+ ++SED     D+    + D      + V     +A TR
Sbjct: 88  LEMINDMSEDFRATLDIIRNEIADVNSRLNLTVRAIANQAQTR 130

[Close]
BLAST of Spg020080 vs. ExPASy TrEMBL
Match: A0A5A7UKK2 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00480 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.6e-09
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 0 

Query: 107 RTIACESRKSAIVTVGIKALLAPKDGMPIQELIMRVENLEGKATRPSSFERGDNLTGSVA 166
           R +     K A  T  I A+    +G+PIQ L+ RV+ LEG A R  S ERG++LTGSVA
Sbjct: 33  RFLESRLEKFAEKTDMIDAVAGRVEGLPIQGLLARVDTLEGTAGRTGSHERGNSLTGSVA 92

Query: 167 QMEERVDDLDSSQKAIAQMVTELSEDEVNPCDLALPRVGD 207
            +EERV +LD+SQK + +M+ ++ ED     D+    + D
Sbjct: 93  HIEERVQELDNSQKTLLEMINDMLEDFRATLDVVRNEIAD 132

The following BLAST results are available for this feature:
BLAST of Spg020080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041962.11.1e-0946.43reverse transcriptase [Cucumis melo var. makuwa] >TYK17897.1 reverse transcripta... [more]
KAA0062302.11.4e-0935.37uncharacterized protein E6C27_scaffold154G00490 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0066681.13.2e-0951.81uncharacterized protein E6C27_scaffold271G00090 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0049646.14.1e-0940.78reverse transcriptase [Cucumis melo var. makuwa] >TYK08905.1 reverse transcripta... [more]
KAA0054039.15.4e-0942.00Gag-pro-like protein [Cucumis melo var. makuwa] >TYJ96884.1 Gag-pro-like protein... [more]
BLAST of Spg020080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg020080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TEV35.3e-1046.43Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A5D3DTJ06.9e-1035.37Asp_protease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5D3DVV71.5e-0951.81Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7U6682.0e-0940.78Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7UKK22.6e-0942.00Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G... [more]
BLAST of Spg020080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020080.1Spg020080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0003824 catalytic activity