Spg020053 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg020053
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase domain-containing protein
Location	scaffold1: 22144947 .. 22149879 (-)
RNA-Seq Expression	Spg020053
Synteny	Spg020053

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTGGCCTAGCATTCATCAATCTCTTGTTAACGGATTGTCACTTCGATGTAGCATCAATCCTTTTCAAGCCAACAAAGTCATGCTCCATGTATACGATCAAGCCACTGCTACAAATTTATGCTCACAACCAGATTGGACCCTTATTGGTAAGCATATAAATTGAAATTTATCCTTTAACCACTGCTACTGCTCAACAGAACGTCTTGACACCATCTTATGGAGGTTGGATTGAGATTTCTCCCCTTCCCCCTACCTTATGGACTGAGAATATTTTCCGTCATATTGGAGATGCTTGCGGTGGTTTTATGGAAACTTCAAACCTTACTAATCGGATGATTATCGCCACTGAGGCAAGGATAAGAATTTGGCCAAACCAATCCGGTTTCATCCCCGCTGCTGTCAAACTCCCTCCAGAACTTGCTGTCGATGAACTTACGATACAAATCAGAGGTATCTCCGGTAGCCAACAGAGAATCGGTCACATTAATGATGGATTACCCGTTATGGTATCTCAGGATTTCACTTTTAAGAAGAGAGAGGATTCGACAAATCAAGCGACGAATTCCATATCGAGAAGGAAAGTCCTGCTTCTAGATATGCCTCAAATCACGGCAACAGAAAAAATCTCTTCTCCACCGCATGTATCTGAACAAATTGATAAAGGAAAGCAGCCGCTCCAAATCACTGATTTTTCGGTCAATCAAACTGCTGGACTTTCAAATCTTAAAATCAGCCATATTGGATCTACCTCAGCGCCAAATTTGAACACTGGTTCCGACACAGAAGCCTTCCTTTCAAGCCCATCTACTAATCATTCAGCCCATAACTCAGCCCACGACCCAACCTCTCCCAGAACCTTGGACCTCACCATCTTTAATGACCCCCAAATCGATGCGGCCCATAACTCAGCCCACGACCCAACCTCCCCTAGAACCATGGACCTCACCATCTTTAATGACCCCCAAATCGATGGCCCACTTGATAATTCGCCGAACCAACTTGTTCAACCCTTTCCCACCCCGATGGATACATTACCACCATTACAGCAAACACCAAACCGAGAAACTCCTCCTCCCAAACCATCGGAATCCCTCCAAATTTCTCCACCTTCTCCACATCCTTCCCCACCACCAAATATCTTGTCCCCAACCAATTCCTTCCCTCATTGCCTACAACATTTAGCCCCTCTTTTAAGCAAGCATGGTCTCTGTATTATGGCTCTACCGACGGCTCCAAAGTCATGTAAAAAGAAAAAAATTGGCAACTACGGGGAAAAAACCAAAAATACCAAGGGAGCTTCAGAATCTTAAATCAAATGTTCATTATGATAAAACAGCCACTTTGGCTTTAATGGAGGGGCCGAAACTGTTAAATGAAATTTCTGACATGGAACGATCGTGGATTGGGTTCTTGGAAGAAAAGGGCATTAATTAAAAAAAACCATTCAGCAACAAAACCCGAGCATTGTTCTCATTCAGGAAACTAAAAAATCATTGATTTGTAGTAGGATTATCAAATCCCTTTGGAGCTCTTCTCATATTGGATGGACTTCTCTTGATTCTTTAGGCGCTTCTGGAGGCATTCTTATTATGTGGAGTGAACCAGATTTTACAGTGAAGGAGACTATCCAAGGTCTCTTCTCTCTCTCTCTATTCATGTATTTATGGCTGACAATTTCTCTTTTTGGCTATCGGCTATATATGGTCCTTCTAGACATGCTGATCGAGTGGATTTTTGGAATGAACTTCATGATCTGGCTGGTTTAGGCGGTGATAATTGGATTCTTGGGGATGATTTTAATGTCACTCGTTGGTCATGGGAAAAATCGCATGGTCGGCCAATGACCAGGAGTATGCGCCTTTTTAACCAATGGATAGCTGATTATCATCTTCTGGACACTCCTTTATAGAATGGTTGCTTTACGTGGTCCAGTTTGGGTGAAAATCATTATTGCTCTTTGATTGATCGTTTTTTGATGACGGATGCTTGTCTCAATAAATTTGGTGTTGCTCATTTTCTTCGTCTTGATAGGGTTACATCGGACCATTACCCTTGTACTCTATCATTTGGGGATCTCTCTTGGGGCCCTTGCCCTTTTAGATTCGAGAATTCTTGGCTGAAAATTGACTCTTTTCGTGATCTTATGGATAATTGGTGGCCACAAAATGCCATTTAGGGATGGCCAGGTCATGGGTTCATGATGAAGCTTAAAGGTTTGAAATCTGAACTTCGAAAATGGAATTTATCTCAGCGCTTATCTGTTGCACAACTTCCATCTCTTGTTTCTCAGTTGAAAATGTTGGATGATACGGAAGACAGGGTCCCATTATCCATGGATCAAATATCTTCTAGAAGATTTTTGCGATAACAAATTGAGGATTTGTCAGCTCAAGAACACATTTATTGGCATCAACGCTGCAAGTTGAACTGGTTAAAACAAGGGGATGAAAATACAAAATTTTTCCATAGAATCATGGCTGCTCGTAAAAGAAAGAATTTCATTTCAGAGATATTGTCTAGAGATGGAAATAGCCTCTTTACAGATAATGATATAGAAGCGGAGTTCCTTGGTTTTTATCAAACTTTGTTTACCAAGGATCGTGGCACTAGATTTCTACCAACTAATGTTGATTGGTGTCCAATAAATGAATCGCAGTCGAAGGGTTTAGAGGCGGTTTTTACAGAAGATGAGGTTTATCAAGCGGTTAAATCGCTAGGCATGAGTAAATCTCCAGGTCCAGATGGATTTACAGTTGAATTCTACAAATTCTCTTAGAATACCATCAGACGTGATATTATGACTATGGTGGAGGATTTCTATAATACAGGTATTATCAATGTTTCCCTGAATGAAACTTATATTTGCCTTATTCCAAAGAAATTAGACTCTAAATCAGTCTCAGACTTTCGCCCTATTAGTCTAATTCCTTGTGCATACAAGATTATAGCTCGAGTTTTGTCCAACAAATTGAAACGGTATTGCCATCCACTATTGCAGAAAATCAAATGGCTTTCGTGGCTAACAGACAAATTCTAGATGCTTCTCTTATAGCAAATGAGTTAATTGATGATTGGACTTTATCTCGTAAGAAAGGTGTGGTGATTAAATTAGATCTTGAAAAGGCCTTTGATAAAGTCGATTGGGATTTTCTGGATGCAATTCTACAGGCCAAGGGTTTTGGCACGGTATGGAGGAAATGGATATATGGTTGCCTTTCTAGTGTTAACTACTCCATTATTATCAATGGAAAACCAAGAGGCAAGATTATCCCCTCTCGAGGCATTCGCCAAGGGGATCCCCTCTCACCTTTCCTTTTCATCTTGGTGTCTGATTGCCTTAGTCGCTTATTATCTCACAGTGCTAATATGGGTCGAACTGTTTCTCATCAGATTGGAAATTCAGAACTTCATGTGAATCATTTGCAATTCGTTGATGATACTTTATTATTCTCCATCTTTTGTAAGGATGCTTTAGTTAATTTGTTCCATATTGTTAAAATTTTTGAACTGGCTTCTGGGTTGAATTTTAACTATTTCAAGAGTGAGGTTCTGGGAATTCATTTGGAGGAATCGGAATTGGAATGGTTGACAACAATGTTTGGATGTAAACAAGGGACTTGGCCTTCCACTTACCTTGGTTTACCTTTGGGAGACAATGCAAAAACTATATTTTTTTGGCAGCCAGTGATTGAAAGGATCCAACATAAACTTTATAGTTGGAAATATTCATATATTTTGAAAGGAGGTCTTCATACTCTTACTCAAGCAGTTCTCTCTAGTATGCCAATATATTACTTATCCTTATTCAAATTGCCGAGAAAGGTTGCAAGATCTCTTGACAAGCTGCTTCGTGACTTCTTCTGGGAAGGATCTAGAGGTGATGGGGGTTTGCATAATATTAATTGGGCAACAGTACAACTTCCAAATTTATTGGAGGGTATTGGTATTGGTAATTTTCAGAATCGCAATCTGGCTCTCCTAGCAAAGTGGATATGGAGATTTTTACATGAGGAAAACACTCTATGGCATAAACTGATTGTTGCTAAGCATTATAAATCTGAGTTGATTAATCATTGGCCTAGCAGTATTTAGAGACGTTCCCACAAATCTCCTTGGAGATTCATTTCCTCTACTATTGACCTAGTATCTTCCCGTATTAAAAGAAGATTGGGTAATGGTCTTGATACTTCATTCTGGCACGATTCGTGGTTAAGTTGTGGTATTTTGGCTACAACTTTTCCTCGTCTTCATCGTTTAACTGATCGTCCGAGGAGTTTGGTTGGTGAGACATGGATTGCTTCTCAAACAGCATGGGACCTGAGTCTTCGGCGTAATTTAAATGATTTGGAGACAGAATAATGGATAGAATTATCACTTATTCTTTCCTCCGTCAGTTTACAGAACCGTAATGATTCCTGGTTATGGCCTTTGGAGTCGTCCAATATTTTTTCTGTTAAATCTCTTATGGAAGACCTTGTAGAGTATCCGACTGTGGCAAATGATCTCTATAAGGTTATTTGGATCGAGTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACAGCTGATCGACTTCAACGACGGATGCCTCATTTTCATTTATCTCCATCTTGGTGCATAATGTGTGCCGCTAGTTCAGAACATTCTGAGCACCTTTTTGTTCACTGTACCTTCACTTACAGATATTGGTCAGAGATTCTTGATGTTTTTGGATGGTCCACTGCTTTTCCAAATTGCATTAAGGATATTCTTACTCTCATTTTTGTGGGGCATCCCTTTCATGGAGAAAAGAAGATCTTATGGCTTGCTTTGAACAGAGTCTTCTTTTGGTTTTTATGGGGCGAACGAAATTCACGAATTTTCAGGGATTCTTTCTCATCCTTTGATAAATTCATGGATTGA

mRNA sequence

ATGACGACTGGCCTAGCATTCATCAATCTCTTGTTAACGGATTGTCACTTCGATGTAGCATCAATCCTTTTCAAGCCAACAAAGTCATGCTCCATGTATACGATCAAGCCACTGCTACAAATTTATGCTCACAACCAGATTGGACCCTTATTGAACGTCTTGACACCATCTTATGGAGGTTGGATTGAGATTTCTCCCCTTCCCCCTACCTTATGGACTGAGAATATTTTCCGTCATATTGGAGATGCTTGCGGTGGTTTTATGGAAACTTCAAACCTTACTAATCGGATGATTATCGCCACTGAGGCAAGGATAAGAATTTGGCCAAACCAATCCGGTTTCATCCCCGCTGCTGTCAAACTCCCTCCAGAACTTGCTGTCGATGAACTTACGATACAAATCAGAGGTATCTCCGGTAGCCAACAGAGAATCGGTCACATTAATGATGGATTACCCGTTATGGTATCTCAGGATTTCACTTTTAAGAAGAGAGAGGATTCGACAAATCAAGCGACGAATTCCATATCGAGAAGGAAAGTCCTGCTTCTAGATATGCCTCAAATCACGGCAACAGAAAAAATCTCTTCTCCACCGCATGTATCTGAACAAATTGATAAAGGAAAGCAGCCGCTCCAAATCACTGATTTTTCGGTCAATCAAACTGCTGGACTTTCAAATCTTAAAATCAGCCATATTGGATCTACCTCAGCGCCAAATTTGAACACTGGTTCCGACACAGAAGCCTTCCTTTCAAGCCCATCTACTAATCATTCAGCCCATAACTCAGCCCACGACCCAACCTCTCCCAGAACCTTGGACCTCACCATCTTTAATGACCCCCAAATCGATGCGGCCCATAACTCAGCCCACGACCCAACCTCCCCTAGAACCATGGACCTCACCATCTTTAATGACCCCCAAATCGATGGCCCACTTGATAATTCGCCGAACCAACTTGTTCAACCCTTTCCCACCCCGATGGATACATTACCACCATTACAGCAAACACCAAACCGAGAAACTCCTCCTCCCAAACCATCGGAATCCCTCCAAATTTCTCCACCTTCTCCACATCCTTCCCCACCACCAAATATCTTGTCCCCAACCAATTCCTTCCCTCATTGCCTACAACATTTAGCCCCTCTTTTAAGCAAGCATGGTCTCTGTATTATGGCTCTACCGACGGCTCCAAAGTCATGCGCTTCTGGAGGCATTCTTATTATGTGGAGTGAACCAGATTTTACAGTGAAGGAGACTATCCAAGGCGGTGATAATTGGATTCTTGGGGATGATTTTAATGTCACTCGTTGGTCATGGGAAAAATCGCATGGTCGGCCAATGACCAGGAGTCATGGGTTCATGATGAAGCTTAAAGGTTTGAAATCTGAACTTCGAAAATGGAATTTATCTCAGCGCTTATCTGTTGCACAACTTCCATCTCTTGTTTCTCAGTTGAAAATGTTGGATGATACGGAAGACAGGGTTGCAAGATCTCTTGACAAGCTGCTTCGTGACTTCTTCTGGGAAGGATCTAGAGGTGATGGGGGTTTGCATAATATTAATTGGGCAACAGTACAACTTCCAAATTTATTGGAGGGTATTGGTATTGGTAATTTTCAGAATCGCAATCTGGCTCTCCTAGCAAAAAGATTGGGTAATGGTCTTGATACTTCATTCTGGCACGATTCGTGGTTAAGTTGTGGTATTTTGGCTACAACTTTTCCTCGTCTTCATCGTTTAACTGATCGTCCGAGGAGTTTGGTTGAATTATCACTTATTCTTTCCTCCGTCAGTTTACAGAACCGTAATGATTCCTGGTTATGGCCTTTGGAGTCGTCCAATATTTTTTCTGTTAAATCTCTTATGGAAGACCTTGTAGAGTATCCGACTGTGGCAAATGATCTCTATAAGGTTATTTGGATCGAGTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACAGCTGATCGACTTCAACGACGGATGCCTCATTTTCATTTATCTCCATCTTGGTGCATAATGTGTGCCGCTAGTTCAGAACATTCTGAGCACCTTTTTGTTCACTGTACCTTCACTTACAGATATTGGTCAGAGATTCTTGATGTTTTTGGATGGTCCACTGCTTTTCCAAATTGCATTAAGGATATTCTTACTCTCATTTTTGTGGGGCATCCCTTTCATGGAGAAAAGAAGATCTTATGGCTTGCTTTGAACAGAGTCTTCTTTTGGTTTTTATGGGGCGAACGAAATTCACGAATTTTCAGGGATTCTTTCTCATCCTTTGATAAATTCATGGATTGA

Coding sequence (CDS)

ATGACGACTGGCCTAGCATTCATCAATCTCTTGTTAACGGATTGTCACTTCGATGTAGCATCAATCCTTTTCAAGCCAACAAAGTCATGCTCCATGTATACGATCAAGCCACTGCTACAAATTTATGCTCACAACCAGATTGGACCCTTATTGAACGTCTTGACACCATCTTATGGAGGTTGGATTGAGATTTCTCCCCTTCCCCCTACCTTATGGACTGAGAATATTTTCCGTCATATTGGAGATGCTTGCGGTGGTTTTATGGAAACTTCAAACCTTACTAATCGGATGATTATCGCCACTGAGGCAAGGATAAGAATTTGGCCAAACCAATCCGGTTTCATCCCCGCTGCTGTCAAACTCCCTCCAGAACTTGCTGTCGATGAACTTACGATACAAATCAGAGGTATCTCCGGTAGCCAACAGAGAATCGGTCACATTAATGATGGATTACCCGTTATGGTATCTCAGGATTTCACTTTTAAGAAGAGAGAGGATTCGACAAATCAAGCGACGAATTCCATATCGAGAAGGAAAGTCCTGCTTCTAGATATGCCTCAAATCACGGCAACAGAAAAAATCTCTTCTCCACCGCATGTATCTGAACAAATTGATAAAGGAAAGCAGCCGCTCCAAATCACTGATTTTTCGGTCAATCAAACTGCTGGACTTTCAAATCTTAAAATCAGCCATATTGGATCTACCTCAGCGCCAAATTTGAACACTGGTTCCGACACAGAAGCCTTCCTTTCAAGCCCATCTACTAATCATTCAGCCCATAACTCAGCCCACGACCCAACCTCTCCCAGAACCTTGGACCTCACCATCTTTAATGACCCCCAAATCGATGCGGCCCATAACTCAGCCCACGACCCAACCTCCCCTAGAACCATGGACCTCACCATCTTTAATGACCCCCAAATCGATGGCCCACTTGATAATTCGCCGAACCAACTTGTTCAACCCTTTCCCACCCCGATGGATACATTACCACCATTACAGCAAACACCAAACCGAGAAACTCCTCCTCCCAAACCATCGGAATCCCTCCAAATTTCTCCACCTTCTCCACATCCTTCCCCACCACCAAATATCTTGTCCCCAACCAATTCCTTCCCTCATTGCCTACAACATTTAGCCCCTCTTTTAAGCAAGCATGGTCTCTGTATTATGGCTCTACCGACGGCTCCAAAGTCATGCGCTTCTGGAGGCATTCTTATTATGTGGAGTGAACCAGATTTTACAGTGAAGGAGACTATCCAAGGCGGTGATAATTGGATTCTTGGGGATGATTTTAATGTCACTCGTTGGTCATGGGAAAAATCGCATGGTCGGCCAATGACCAGGAGTCATGGGTTCATGATGAAGCTTAAAGGTTTGAAATCTGAACTTCGAAAATGGAATTTATCTCAGCGCTTATCTGTTGCACAACTTCCATCTCTTGTTTCTCAGTTGAAAATGTTGGATGATACGGAAGACAGGGTTGCAAGATCTCTTGACAAGCTGCTTCGTGACTTCTTCTGGGAAGGATCTAGAGGTGATGGGGGTTTGCATAATATTAATTGGGCAACAGTACAACTTCCAAATTTATTGGAGGGTATTGGTATTGGTAATTTTCAGAATCGCAATCTGGCTCTCCTAGCAAAAAGATTGGGTAATGGTCTTGATACTTCATTCTGGCACGATTCGTGGTTAAGTTGTGGTATTTTGGCTACAACTTTTCCTCGTCTTCATCGTTTAACTGATCGTCCGAGGAGTTTGGTTGAATTATCACTTATTCTTTCCTCCGTCAGTTTACAGAACCGTAATGATTCCTGGTTATGGCCTTTGGAGTCGTCCAATATTTTTTCTGTTAAATCTCTTATGGAAGACCTTGTAGAGTATCCGACTGTGGCAAATGATCTCTATAAGGTTATTTGGATCGAGTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGGTGCTATTAATACAGCTGATCGACTTCAACGACGGATGCCTCATTTTCATTTATCTCCATCTTGGTGCATAATGTGTGCCGCTAGTTCAGAACATTCTGAGCACCTTTTTGTTCACTGTACCTTCACTTACAGATATTGGTCAGAGATTCTTGATGTTTTTGGATGGTCCACTGCTTTTCCAAATTGCATTAAGGATATTCTTACTCTCATTTTTGTGGGGCATCCCTTTCATGGAGAAAAGAAGATCTTATGGCTTGCTTTGAACAGAGTCTTCTTTTGGTTTTTATGGGGCGAACGAAATTCACGAATTTTCAGGGATTCTTTCTCATCCTTTGATAAATTCATGGATTGA

Protein sequence

MTTGLAFINLLLTDCHFDVASILFKPTKSCSMYTIKPLLQIYAHNQIGPLLNVLTPSYGGWIEISPLPPTLWTENIFRHIGDACGGFMETSNLTNRMIIATEARIRIWPNQSGFIPAAVKLPPELAVDELTIQIRGISGSQQRIGHINDGLPVMVSQDFTFKKREDSTNQATNSISRRKVLLLDMPQITATEKISSPPHVSEQIDKGKQPLQITDFSVNQTAGLSNLKISHIGSTSAPNLNTGSDTEAFLSSPSTNHSAHNSAHDPTSPRTLDLTIFNDPQIDAAHNSAHDPTSPRTMDLTIFNDPQIDGPLDNSPNQLVQPFPTPMDTLPPLQQTPNRETPPPKPSESLQISPPSPHPSPPPNILSPTNSFPHCLQHLAPLLSKHGLCIMALPTAPKSCASGGILIMWSEPDFTVKETIQGGDNWILGDDFNVTRWSWEKSHGRPMTRSHGFMMKLKGLKSELRKWNLSQRLSVAQLPSLVSQLKMLDDTEDRVARSLDKLLRDFFWEGSRGDGGLHNINWATVQLPNLLEGIGIGNFQNRNLALLAKRLGNGLDTSFWHDSWLSCGILATTFPRLHRLTDRPRSLVELSLILSSVSLQNRNDSWLWPLESSNIFSVKSLMEDLVEYPTVANDLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNRVFFWFLWGERNSRIFRDSFSSFDKFMD

Homology

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BLAST of Spg020053 vs. NCBI nr
Match: RVX17758.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 157.1 bits (396), Expect = 5.9e-34
Identity = 104/327 (31.80%), Postives = 141/327 (43.12%), Query Frame = 0


Query: 495 VARSLDKLLRDFFWEGSRGDGGLHNINWATVQLPNLLEGIGIGNFQNRNLALLAKRL--- 554
           +A  ++K+ RDF W G+      H I W  V  P  + G+G G    RN ALL K L   
Sbjct: 110 IASKIEKMQRDFLWSGAGEGKKDHLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRF 169

Query: 555 --------------------GNGLDTSFWHDSWLSCGILATTFPRLHR------------ 614
                               GNG    FW D W     L + F  L+R            
Sbjct: 170 PRERSGLWHKEFSPFVRLVVGNGERIRFWEDLWWGNQTLCSQFADLYRVISMKNLTVSNV 229

Query: 615 ----------------LTDRPRSLVE-LSLILSSVSLQ-NRNDSWLWPLESSNIFSVKSL 674
                           LTD    L++ L   L+SV L  + +DS +W L SS+ FSVKS 
Sbjct: 230 LGNSLPLSWNFNFRRNLTDSEIDLLQRLMSSLNSVLLSPSSSDSRVWSLSSSSSFSVKSF 289

Query: 675 MEDLVEYPTVANDLY----KVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSP 734
              L +   V+N L     K +W    P K+K   W ++HG +NT D+LQ R P+  L P
Sbjct: 290 FYALSK---VSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALYP 349

Query: 735 SWCIMCAASSEHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGE 765
            WCI+C    E  +HLF+HC  T   W  + ++ G     P  ++D+L + F G      
Sbjct: 350 QWCILCKGHGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSLEDMLVISFKGLGNSLR 409

[Close]

BLAST of Spg020053 vs. NCBI nr
Match: RVW56165.1 (Calcium-transporting ATPase 3, endoplasmic reticulum-type [Vitis vinifera])

HSP 1 Score: 153.3 bits (386), Expect = 8.6e-33
Identity = 102/335 (30.45%), Postives = 140/335 (41.79%), Query Frame = 0


Query: 495 VARSLDKLLRDFFWEGSRGDGGLHNINWATVQLPNLLEGIGIGNFQNRNLALLAKRL--- 554
           +A  ++K+ R+F W G+      H + W  V  P  L G+G G    RN+ALL K L   
Sbjct: 281 IASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKELGGLGFGKISLRNIALLGKWLWRF 340

Query: 555 -----------------GNGLDTSFWHDSWLSCGILATTFPRLHR--------------- 614
                            G   + SFW D W     L + F  L+R               
Sbjct: 341 PRERSGLWNFPFCSPSGGQWGENSFWEDLWWGNQSLCSQFADLYRVISVKNLTVSNVLGN 400

Query: 615 -------------LTDRPRSLVE-----LSLILSSVSLQNRNDSWLWPLESSNIFSVKSL 674
                        LTD    L++     LS +  S SL    DS  W L SS +F+VKS 
Sbjct: 401 SFPLDWNLNFRRNLTDSEIDLLQRLMSSLSTVRFSPSLA---DSRAWSLSSSGLFTVKSF 460

Query: 675 MEDL--VEYPTVANDLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSW 734
              L  V  P +     K +W    P K+K   W ++HG +NT D+LQ R P+  L P W
Sbjct: 461 FLALSKVSNPNLFLPA-KFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQW 520

Query: 735 CIMCAASSEHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKK 775
           CI+C  + E  +HLF+HC  T   W+++  + G     P   +D+L + F G       K
Sbjct: 521 CILCKGNGESIDHLFLHCPVTIGLWNKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGK 580

[Close]

BLAST of Spg020053 vs. NCBI nr
Match: CAN74004.1 (hypothetical protein VITISV_006235 [Vitis vinifera])

HSP 1 Score: 152.9 bits (385), Expect = 1.1e-32
Identity = 107/361 (29.64%), Postives = 147/361 (40.72%), Query Frame = 0


Query: 475  VAQLPSLVSQLKMLDDTEDRVARSLDKLLRDFFWEGSRGDGGLHNINWATVQLPNLLEGI 534
            +  LPS    L  +  T   VA  +++L RDF W G       H + W  V  P  + G+
Sbjct: 1377 LTHLPSYFLSLFKMPAT---VAAKIERLQRDFLWSGVGEGKRDHLVRWDIVXRPKTIGGL 1436

Query: 535  GIGNFQNRNLALLAKRL------------------------------GNGLDTSFWHDSW 594
            G+GN   RNLALL K L                              GNG    FW D W
Sbjct: 1437 GLGNISXRNLALLGKWLWRYPREGSALWHQAIAQVFQEFSLITRYVVGNGDRIRFWEDLW 1496

Query: 595  LSCGILATTFPRLHRLTDRPRSLVELSLILSSVSLQNRN--------------------- 654
                 L T +PRL R+       +   L  S   L N N                     
Sbjct: 1497 RGDQXLGTQYPRLFRVVVDKNISISSVLXPSRPFLWNLNFRRNLSDSEIEDLEGLMRSLD 1556

Query: 655  ---------DSWLWPLESSNIFSVKSLMEDLVEYP-TVANDLYKVIWIEFYPKKIKIFLW 714
                     D+ LWPL SS +FSVKS    L +   +  N   K +W    P K+K F+W
Sbjct: 1557 DLYLSPSVPDARLWPLSSSGLFSVKSFFLALSQSSGSSQNFPSKFVWNSQVPFKVKSFVW 1616

Query: 715  ELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHLFVHCTFTYRYWSEILDVFGW 774
             ++H  +NT D LQ R P+  LSP  CI+C    E ++HLF+HC+ T   W  +  +   
Sbjct: 1617 LVAHKKVNTNDMLQVRRPYKALSPDICILCMKHGESADHLFLHCSLTIGLWHRLFQLAKL 1676

[Close]

BLAST of Spg020053 vs. NCBI nr
Match: RVX04307.1 (Beta-arabinofuranosyltransferase RAY1 [Vitis vinifera])

HSP 1 Score: 150.2 bits (378), Expect = 7.3e-32
Identity = 100/324 (30.86%), Postives = 137/324 (42.28%), Query Frame = 0


Query: 495  VARSLDKLLRDFFWEGSRGDGGLHNINWATVQLPNLLEGIGIGNFQNRNLALLAKRL--- 554
            VA  +++L RDF W G       H + W  V  P  + G+G+GN   RNLALL K L   
Sbjct: 821  VAAKIERLQRDFLWSGVGEGKRDHLVRWDVVCKPKTIGGLGLGNISWRNLALLGKWLWRY 880

Query: 555  --------------------GNGLDTSFWHDSWLSCGILATTFPRLHRLTDRPRSLVELS 614
                                GNG    FW D W     L T +PRL R+       +   
Sbjct: 881  PREGSALWHQGFSLITRYVVGNGERIRFWEDLWWGDQPLGTQYPRLFRVVVDKNISISSV 940

Query: 615  LILSSVSLQNRN------------------------------DSWLWPLESSNIFSVKSL 674
            L  S   L N N                              D+ LWPL SS +FSVKS 
Sbjct: 941  LGPSRPFLWNLNFRRNLSDSEIEDLESLMRSLDDLYLSPSVPDARLWPLSSSGLFSVKSF 1000

Query: 675  MEDLVEYP-TVANDLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWC 734
               L +   +  N   K +W    P K+K F+W ++H  +NT D LQ R P+  LSP  C
Sbjct: 1001 FLALSQSSGSPQNFPSKFVWNSQVPFKVKSFVWLVAHKKVNTNDMLQVRRPYKALSPDIC 1060

Query: 735  IMCAASSEHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKI 765
            I+C    E ++HLF++C+ T   W  +  +       P  I D++ + F G        +
Sbjct: 1061 ILCMKHGESADHLFLYCSLTIGLWHRLFQLAKMDWVSPRSIYDMMFIKFKGFGNSKRGIV 1120

[Close]

BLAST of Spg020053 vs. NCBI nr
Match: RVW79074.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 149.8 bits (377), Expect = 9.5e-32
Identity = 99/317 (31.23%), Postives = 130/317 (41.01%), Query Frame = 0


Query: 504 RDFFWEGSRGDGGLHNINWATVQLPNLLEGIGIGNFQNRNLALLAKRL------------ 563
           RDF W G+      H I W  V  P  + G+G G    RN ALL K L            
Sbjct: 3   RDFLWSGAGEGKRDHLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLGGFLEKGAVFGI 62

Query: 564 -------------GNGLDTSFWHDSWLSCGILATTFPRLHR------------------- 623
                        GNG    FW D W     L   F  L+R                   
Sbjct: 63  SFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVISVRNLIVSNVLGNSFPL 122

Query: 624 ---------LTDRPRSLVE--LSLILSSVSLQNRNDSWLWPLESSNIFSVKSLMEDLVEY 683
                    LTD    L++  +S + S +   + +DS  W L SS  FSVKS    L + 
Sbjct: 123 SWNFNFCRNLTDSEIDLLQRLMSSLQSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSKD 182

Query: 684 PTVANDL-YKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASS 743
                 L  K +W    P K+K   W ++HG +NT D+LQ R P+  L P WCI+C  + 
Sbjct: 183 SNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNG 242

Query: 744 EHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNR 765
           E  +HLF+HC  T   W  + ++ G     P  I+D+L + F G       KILW     
Sbjct: 243 ESIDHLFLHCPVTIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNLVRGKILWQIACL 302

[Close]

BLAST of Spg020053 vs. ExPASy TrEMBL
Match: A0A438K969 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_73 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-34
Identity = 104/327 (31.80%), Postives = 141/327 (43.12%), Query Frame = 0


Query: 495 VARSLDKLLRDFFWEGSRGDGGLHNINWATVQLPNLLEGIGIGNFQNRNLALLAKRL--- 554
           +A  ++K+ RDF W G+      H I W  V  P  + G+G G    RN ALL K L   
Sbjct: 110 IASKIEKMQRDFLWSGAGEGKKDHLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRF 169

Query: 555 --------------------GNGLDTSFWHDSWLSCGILATTFPRLHR------------ 614
                               GNG    FW D W     L + F  L+R            
Sbjct: 170 PRERSGLWHKEFSPFVRLVVGNGERIRFWEDLWWGNQTLCSQFADLYRVISMKNLTVSNV 229

Query: 615 ----------------LTDRPRSLVE-LSLILSSVSLQ-NRNDSWLWPLESSNIFSVKSL 674
                           LTD    L++ L   L+SV L  + +DS +W L SS+ FSVKS 
Sbjct: 230 LGNSLPLSWNFNFRRNLTDSEIDLLQRLMSSLNSVLLSPSSSDSRVWSLSSSSSFSVKSF 289

Query: 675 MEDLVEYPTVANDLY----KVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSP 734
              L +   V+N L     K +W    P K+K   W ++HG +NT D+LQ R P+  L P
Sbjct: 290 FYALSK---VSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALYP 349

Query: 735 SWCIMCAASSEHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGE 765
            WCI+C    E  +HLF+HC  T   W  + ++ G     P  ++D+L + F G      
Sbjct: 350 QWCILCKGHGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSLEDMLVISFKGLGNSLR 409

[Close]

BLAST of Spg020053 vs. ExPASy TrEMBL
Match: A0A438F829 (Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Vitis vinifera OX=29760 GN=ECA3_7 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.2e-33
Identity = 102/335 (30.45%), Postives = 140/335 (41.79%), Query Frame = 0


Query: 495 VARSLDKLLRDFFWEGSRGDGGLHNINWATVQLPNLLEGIGIGNFQNRNLALLAKRL--- 554
           +A  ++K+ R+F W G+      H + W  V  P  L G+G G    RN+ALL K L   
Sbjct: 281 IASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKELGGLGFGKISLRNIALLGKWLWRF 340

Query: 555 -----------------GNGLDTSFWHDSWLSCGILATTFPRLHR--------------- 614
                            G   + SFW D W     L + F  L+R               
Sbjct: 341 PRERSGLWNFPFCSPSGGQWGENSFWEDLWWGNQSLCSQFADLYRVISVKNLTVSNVLGN 400

Query: 615 -------------LTDRPRSLVE-----LSLILSSVSLQNRNDSWLWPLESSNIFSVKSL 674
                        LTD    L++     LS +  S SL    DS  W L SS +F+VKS 
Sbjct: 401 SFPLDWNLNFRRNLTDSEIDLLQRLMSSLSTVRFSPSLA---DSRAWSLSSSGLFTVKSF 460

Query: 675 MEDL--VEYPTVANDLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSW 734
              L  V  P +     K +W    P K+K   W ++HG +NT D+LQ R P+  L P W
Sbjct: 461 FLALSKVSNPNLFLPA-KFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQW 520

Query: 735 CIMCAASSEHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKK 775
           CI+C  + E  +HLF+HC  T   W+++  + G     P   +D+L + F G       K
Sbjct: 521 CILCKGNGESIDHLFLHCPVTIGLWNKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGK 580

[Close]

BLAST of Spg020053 vs. ExPASy TrEMBL
Match: A5B0H6 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_006235 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.4e-33
Identity = 107/361 (29.64%), Postives = 147/361 (40.72%), Query Frame = 0


Query: 475  VAQLPSLVSQLKMLDDTEDRVARSLDKLLRDFFWEGSRGDGGLHNINWATVQLPNLLEGI 534
            +  LPS    L  +  T   VA  +++L RDF W G       H + W  V  P  + G+
Sbjct: 1377 LTHLPSYFLSLFKMPAT---VAAKIERLQRDFLWSGVGEGKRDHLVRWDIVXRPKTIGGL 1436

Query: 535  GIGNFQNRNLALLAKRL------------------------------GNGLDTSFWHDSW 594
            G+GN   RNLALL K L                              GNG    FW D W
Sbjct: 1437 GLGNISXRNLALLGKWLWRYPREGSALWHQAIAQVFQEFSLITRYVVGNGDRIRFWEDLW 1496

Query: 595  LSCGILATTFPRLHRLTDRPRSLVELSLILSSVSLQNRN--------------------- 654
                 L T +PRL R+       +   L  S   L N N                     
Sbjct: 1497 RGDQXLGTQYPRLFRVVVDKNISISSVLXPSRPFLWNLNFRRNLSDSEIEDLEGLMRSLD 1556

Query: 655  ---------DSWLWPLESSNIFSVKSLMEDLVEYP-TVANDLYKVIWIEFYPKKIKIFLW 714
                     D+ LWPL SS +FSVKS    L +   +  N   K +W    P K+K F+W
Sbjct: 1557 DLYLSPSVPDARLWPLSSSGLFSVKSFFLALSQSSGSSQNFPSKFVWNSQVPFKVKSFVW 1616

Query: 715  ELSHGAINTADRLQRRMPHFHLSPSWCIMCAASSEHSEHLFVHCTFTYRYWSEILDVFGW 774
             ++H  +NT D LQ R P+  LSP  CI+C    E ++HLF+HC+ T   W  +  +   
Sbjct: 1617 LVAHKKVNTNDMLQVRRPYKALSPDICILCMKHGESADHLFLHCSLTIGLWHRLFQLAKL 1676

[Close]

BLAST of Spg020053 vs. ExPASy TrEMBL
Match: A0A438J5R7 (Beta-arabinofuranosyltransferase RAY1 OS=Vitis vinifera OX=29760 GN=RAY1_1 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.5e-32
Identity = 100/324 (30.86%), Postives = 137/324 (42.28%), Query Frame = 0


Query: 495  VARSLDKLLRDFFWEGSRGDGGLHNINWATVQLPNLLEGIGIGNFQNRNLALLAKRL--- 554
            VA  +++L RDF W G       H + W  V  P  + G+G+GN   RNLALL K L   
Sbjct: 821  VAAKIERLQRDFLWSGVGEGKRDHLVRWDVVCKPKTIGGLGLGNISWRNLALLGKWLWRY 880

Query: 555  --------------------GNGLDTSFWHDSWLSCGILATTFPRLHRLTDRPRSLVELS 614
                                GNG    FW D W     L T +PRL R+       +   
Sbjct: 881  PREGSALWHQGFSLITRYVVGNGERIRFWEDLWWGDQPLGTQYPRLFRVVVDKNISISSV 940

Query: 615  LILSSVSLQNRN------------------------------DSWLWPLESSNIFSVKSL 674
            L  S   L N N                              D+ LWPL SS +FSVKS 
Sbjct: 941  LGPSRPFLWNLNFRRNLSDSEIEDLESLMRSLDDLYLSPSVPDARLWPLSSSGLFSVKSF 1000

Query: 675  MEDLVEYP-TVANDLYKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWC 734
               L +   +  N   K +W    P K+K F+W ++H  +NT D LQ R P+  LSP  C
Sbjct: 1001 FLALSQSSGSPQNFPSKFVWNSQVPFKVKSFVWLVAHKKVNTNDMLQVRRPYKALSPDIC 1060

Query: 735  IMCAASSEHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKI 765
            I+C    E ++HLF++C+ T   W  +  +       P  I D++ + F G        +
Sbjct: 1061 ILCMKHGESADHLFLYCSLTIGLWHRLFQLAKMDWVSPRSIYDMMFIKFKGFGNSKRGIV 1120

[Close]

BLAST of Spg020053 vs. ExPASy TrEMBL
Match: A0A438H396 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_247 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-32
Identity = 99/317 (31.23%), Postives = 130/317 (41.01%), Query Frame = 0


Query: 504 RDFFWEGSRGDGGLHNINWATVQLPNLLEGIGIGNFQNRNLALLAKRL------------ 563
           RDF W G+      H I W  V  P  + G+G G    RN ALL K L            
Sbjct: 3   RDFLWSGAGEGKRDHLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLGGFLEKGAVFGI 62

Query: 564 -------------GNGLDTSFWHDSWLSCGILATTFPRLHR------------------- 623
                        GNG    FW D W     L   F  L+R                   
Sbjct: 63  SFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYRVISVRNLIVSNVLGNSFPL 122

Query: 624 ---------LTDRPRSLVE--LSLILSSVSLQNRNDSWLWPLESSNIFSVKSLMEDLVEY 683
                    LTD    L++  +S + S +   + +DS  W L SS  FSVKS    L + 
Sbjct: 123 SWNFNFCRNLTDSEIDLLQRLMSSLQSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSKD 182

Query: 684 PTVANDL-YKVIWIEFYPKKIKIFLWELSHGAINTADRLQRRMPHFHLSPSWCIMCAASS 743
                 L  K +W    P K+K   W ++HG +NT D+LQ R P+  L P WCI+C  + 
Sbjct: 183 SNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNG 242

Query: 744 EHSEHLFVHCTFTYRYWSEILDVFGWSTAFPNCIKDILTLIFVGHPFHGEKKILWLALNR 765
           E  +HLF+HC  T   W  + ++ G     P  I+D+L + F G       KILW     
Sbjct: 243 ESIDHLFLHCPVTIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNLVRGKILWQIACL 302

The following BLAST results are available for this feature:

BLAST of Spg020053 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX17758.1	5.9e-34	31.80	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW56165.1	8.6e-33	30.45	Calcium-transporting ATPase 3, endoplasmic reticulum-type [Vitis vinifera]	[more]
CAN74004.1	1.1e-32	29.64	hypothetical protein VITISV_006235 [Vitis vinifera]	[more]
RVX04307.1	7.3e-32	30.86	Beta-arabinofuranosyltransferase RAY1 [Vitis vinifera]	[more]
RVW79074.1	9.5e-32	31.23	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of Spg020053 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg020053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438K969	2.9e-34	31.80	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_73 PE...	[more]
A0A438F829	4.2e-33	30.45	Calcium-transporting ATPase 3, endoplasmic reticulum-type OS=Vitis vinifera OX=2...	[more]
A5B0H6	5.4e-33	29.64	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438J5R7	3.5e-32	30.86	Beta-arabinofuranosyltransferase RAY1 OS=Vitis vinifera OX=29760 GN=RAY1_1 PE=4 ...	[more]
A0A438H396	4.6e-32	31.23	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_247 P...	[more]

BLAST of Spg020053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 61..107 e-value: 9.3E-8 score: 31.7
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 616..704 e-value: 1.6E-14 score: 54.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 325..368
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 308..324
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..301
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..369
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 616..723
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 616..723

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg020053.1	Spg020053.1	mRNA