Spg020029 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg020029
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSerine/threonine-protein phosphatase 7 long form-like protein
Locationscaffold1: 23641971 .. 23646058 (-)
RNA-Seq ExpressionSpg020029
SyntenySpg020029
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATAAGTGTCTGGCATTTGTTCTGCATACAAATGGTACCATGATTTATGGTGTTAATGGGATTGAATATGACCAACCAGCCTGTGGAGGTTTTACTGTGAATGTGAATAGTGGGATTGTGTTTAACCAGTTTATTGAAATGGTAGAGATGTCTCTTGGTATAGATGTAAGGGTCAATTAGTTAGAGATAGTGTATAGACACCCTGAGGTAACAATATAAGGATCTGTAAGGTATATGCCAATATCAATTCCTAACGACCAGACAATGAAGTTTATGTTCTCAATTGCGTTGCCTACCCCAAATTTAGTGCATTTATATGTTACTATAATGAGGGTGGACATAGATTCACAAAATTTAGGAGAAGACCCTAGCCAATGTGTTGACCAGAGTCAATGTCTTGATCCTGAGCCTGAATCAATGGTGCCTCCACATGATGGTGAAGATGTGGTGGTAGATAATACTCTTAAAGAGCTGAGGACAGAGACAAACGATGAATTTGAAAATTTGGACTTTGATGATCTTGAACATATTATCCCATCAGAAACATTCAATCAATTGGATATGGATGTCATAGATAGTGTTGCAGAACATGATCCCATTGTTGCTCCTGTGGTCGTTGAAAATAATTTTTTATATAAGGGATTGATATGCCAAGACAAAGAAATTCTTCAACATTTGACAAAGTGTTTTGCTGTTAAGTGTTTTGCACCGTACGAAGTAGTTGAGTCAACCCCATCCAAATGGACAGTACGATGTAAAAAATGGGAGGATGGTTGCAAATGGAGACTTCGTGCCATTAAGAAAAAATCTCATGGACTATTTGAGATCACCCAATACGTTGAGGAGCATTGATAACTGCCCAAAAGGTAGTTATTTAGGCCTCATTTCTATAGGGATTTGTGTGTCTTTTGTGCTTAATAGGGTTGGTTTTAGATGTAAATTATATGTTTTAACCCATTTGGAAGAATGGAAGCTTTGGAAGTTATTTTATGCAGAATATGTTGCTGGGCGACTGGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAAGACTGCCACGTCACAGCTCGTTAGCCAAATTGCCAAACTGAATTCTGTTGAGTTTTTCTCGTGATAAAGGAGCAAGGAGAGCCCTACACGTGTCCAGGTTGACCTAAGTCAAGCCTTCTATCCTTCTATAAAAGGGAGTAGCCGCCCAAGTCTAAGTCATTCCACTTTTGGGAGAAAACATTCCATTCTTGGGAAGTTCCTTCCACCTTTTGGGAGCTGAATAGAGGAAAGAGATTGGAGACCACCTAGAAGACCATCATTGCAAGCTGATCGAGGAGATTAGTATTTCCTTTTATTATCTTGTAATTATGGACATGCCTACTCAGATTGTAGCGTGCGTCTCCATGCATATTATGAACTAAGTAGCTTAGACGTTGGTTAGGAACTATGTGATTGTCGTGCTTAACTTCAGTAATATAAATTGATTACTGCATCTTGGTTAATTGTTGTACTTGTTTATATTTTATGCCCGCCTGGCCAGCTGGTATGAATACCTCTCTCTAGTTTCAGGGATGATTTAGAGAGTGTGTGGCGATTAATCACACTACGATCATTGTGTATTGGTGAACGCCAGTGACTGAGCTAGGGATAGCCAGTTGCCTAGTGCTTGATCGGTCGTACTTCATTGGGGTTGAAACACATTCCAAAAAATCCGGAGTTCCGGGAGGAATCCGCTAATAATACTGCGAGAGTTTGCATGATCAATAATATTGCTAGAGCATCTTTTAAAACAATTACTAAATCCTGACCAGCGCCTGTTTCTAATCTGTCTGTCTATCCGTTTACTTTCTGTTCTGTCATTTCTTTTGTTTCAGCATTATTCTTATAAAAACCAATCATTTTTACCATCTTTTGAAACCATTAAAGAGTTATACAAAATACATAAAGTGGAAGCTAGTTCAGGCCTTGGATTGATAATACTTATTACTTGCTGCGGACTGTGTATACTTGCACAGAGTTCTAGAGTCCTTTTATACCATATTTTTACTCACTCTAGGAACCTAACAAGCATACCTGTTTTTATTTAGAATTAAGCCAGAGTCACGTGCAACTAGATTCTTCCATGATTGCTATGGAATTTTGTGAATCTGTAAGGGAGAAGCCTTCGATTAGCGTGTTGAAACTACAATCTGAAATACGAACAAAATTTGGGTATCATGTTCCTTATCATAGGGTCTGGGAAGGAAAAAGGAAACCGTTGGTAAAAGTGTTTGGTGACTGGGACGAATCTTACAAACTTTTACCCAAGTGGATATACATGGTGAAACACACTAATCCTAGCACACGTGTCGAATGGAAAGTGAAAAATACACTGAGTGCAGGACATGACATCCTTACTTCTGTTTTTTGGGCATTCGGACCCTGTATTGAGGCTTTTAAGTACTGTCGACCCATCATTCAAATAGACGGTACTCATTTATATGGAAAATATAGGGGGAAGTTATTAATTGCAACATCAGTTGACTCCAACGGACATTTGCTACCACTTGCATTAGCCATTATAGATGAGGAGTGTCGTGACACATGGGGATGGTTTCTGAAAAACTTGAGAGAGTGTGTTACACATGAAGAAGTTTCCTTGATTTCTGATTGACATGGAGGCATCATCTCTGTTGTTAACAATTCAAATAATGGGTGGACAGGAGACAAATCTCACCACAGATTTTGCTTGAGACATGTTGTTAGCAATTTTAATAAAAAATACAAATCCAAGCAATTGAAAAATTTAGTTTATCTTGCTGGGTGTTAGTATCAGGTCCGAAAGTACAATATGGCTGTTGAAGAGATTAAAGGAATCAATAGCTCTTGCTTGAACTTCTTCAATAATATTGGAATTGAGAAATGGACTCAATCACATGATGGAGGGGTTAGATACGGGTGGATGACAACAAACTTGTCGGAGTGCATAAACAGAGTTTTAAAAGGAGGTCGTATGTTGCCAATCACTGCACTCGCGCAAATTACCTTTTATCGCTGTGTGAAATATTTTGAGAGGAGAAGAGGAGAAACAAGACGTGATTTGACTCGAAATGAGAAGTACACGAGGTAATTACTCAACCTACTTTTCTTATTGGTTTACCATTTTCATTGTTAATACTTAGCGTGAAATTTCAAATATGTATTAGGTATGCGCATGATAAGATCGTTAAATGGGCAACACGATCCAGTTAGCACGAGGTGTTGTCATATGATCGAGTTACCGGTGTATTCCACGTGAAGACAGGACTTCATTATTTCAATACTAAAGGAGGAAATATTCAAACTATGAAGCTAAGTGGAAAGAATGGGTGTTGCTCCTGTAACAAGTGGCAAACCTTTGGAATTCCATGCTCCCATTTTATGGCAGTTTGCTCACAAATACATTTGAACTACGAAGATTATATTGAGGATTATTATAAGCTTTCAACCTATACTGCATGTTACTCTTCTCAATTTCAACCAATTCCACACGAAGATTATTGGATAAACCCTCCTAACTTTCCTGTCTCATATGCGAACCCACGATTGTTGAGAGAAGCGGGTAGACCAAAAAGTTTCCGCTACCATAATGAGATGGATTGAAGGGAGTCAAGCACTCAACAACGGTGCGGATTGTGTAATCAACTCGGTCATAATAGAAGAAGTTGTCCTTCGAGACAAAGAGAAGCACATTTGTAACCTTTATTTTTTCTTTTATGAGTTTTTAGATTGTAATGACGTTTTATATGTAATGACGTTGATATGTAATTTTTCATTTAGATGCAATGCAATATTTTTTAGCGATATTATGTCCAATTCTAATTTTTTTGCTATTATTTTATTTGTTTGTTTAATTTATAAATACTATAGTTAATAAATATATTTTCACGTTGTTATTTTGTAGATCATGGATATAAATCCAGGACCACTCGATGCGTCTTTCTTATATGATCAGGTGTCACATCGTTCAGAGCTCGTGTGGAATGACGGGAACTTGGAAGAGTTACATTGTAGACGCCGAGAGGCAGTTCTACAGCGTAATATTGAAGGGATAAAAGCCCTTGCGTAG

mRNA sequence

ATGGAAGATAAGTGTCTGGCATTTGTTCTGCATACAAATGGTACCATGATTTATGGTGTTAATGGGATTGAATATGACCAACCAGCCTGTGGAGGTTTTACTGTGAATGTGAATAGTGGGATTGTGTTTAACCAGTTTATTGAAATGGTAGAGATGTCTCTTGGTATAGATAGTCAATGTCTTGATCCTGAGCCTGAATCAATGGTGCCTCCACATGATGGTGAAGATGTGGTGAATATGTTGCTGGGCGACTGGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAAGACTGCCACGTCACAGCTCGTTAGCCAAATTGCCAAACTGAATTCTATCATGGATATAAATCCAGGACCACTCGATGCGTCTTTCTTATATGATCAGGTGTCACATCGTTCAGAGCTCGTGTGGAATGACGGGAACTTGGAAGAGTTACATTGTAGACGCCGAGAGGCAGTTCTACAGCGTAATATTGAAGGGATAAAAGCCCTTGCGTAG

Coding sequence (CDS)

ATGGAAGATAAGTGTCTGGCATTTGTTCTGCATACAAATGGTACCATGATTTATGGTGTTAATGGGATTGAATATGACCAACCAGCCTGTGGAGGTTTTACTGTGAATGTGAATAGTGGGATTGTGTTTAACCAGTTTATTGAAATGGTAGAGATGTCTCTTGGTATAGATAGTCAATGTCTTGATCCTGAGCCTGAATCAATGGTGCCTCCACATGATGGTGAAGATGTGGTGAATATGTTGCTGGGCGACTGGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAAGACTGCCACGTCACAGCTCGTTAGCCAAATTGCCAAACTGAATTCTATCATGGATATAAATCCAGGACCACTCGATGCGTCTTTCTTATATGATCAGGTGTCACATCGTTCAGAGCTCGTGTGGAATGACGGGAACTTGGAAGAGTTACATTGTAGACGCCGAGAGGCAGTTCTACAGCGTAATATTGAAGGGATAAAAGCCCTTGCGTAG

Protein sequence

MEDKCLAFVLHTNGTMIYGVNGIEYDQPACGGFTVNVNSGIVFNQFIEMVEMSLGIDSQCLDPEPESMVPPHDGEDVVNMLLGDWREQILCCSKTGSKTATSQLVSQIAKLNSIMDINPGPLDASFLYDQVSHRSELVWNDGNLEELHCRRREAVLQRNIEGIKALA
Homology
[Close]
BLAST of Spg020029 vs. NCBI nr
Match: KAA0041167.1 (uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-13
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1  MEDKCLAFVLHTNGTMIYGVNGIEYDQPACGGFTVNVNSGIVFNQFIEMVEMSLGIDSQC 60
          M DK L F+L  NG MI G +GI+YDQPACGGFT++VNSGIVF QFIE+V  S+GID + 
Sbjct: 1  MADKILGFMLFVNGNMIDGSDGIDYDQPACGGFTISVNSGIVFEQFIEIVGSSVGIDIRI 60

Query: 61 LDPE 65
           D E
Sbjct: 61 SDIE 64

[Close]
BLAST of Spg020029 vs. NCBI nr
Match: XP_016902058.1 (PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 7.6e-11
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1   MEDKCLAFVLHTNGTMIYGVNGIEYDQPACGGFTVNVNSGIVFNQFIEMVEMSLGID 58
           M +K ++F+L TNG MI GV+G++YDQP CG F++N NS IVF QF++MV +SLG+D
Sbjct: 197 MTNKYVSFLLFTNGHMINGVDGVDYDQPPCGNFSINWNSRIVFEQFLQMVGLSLGVD 253

[Close]
BLAST of Spg020029 vs. NCBI nr
Match: KAA0040476.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK23484.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-07
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 113 SIMDINPGPLDASFLYDQVSHRSELVWNDGNLEELHCRRREAVLQRNI 161
           +IM +N GP+D   LYDQ  HRSE VW+D N  E++CRRREAV+QR I
Sbjct: 466 AIMTLNRGPIDPDVLYDQNIHRSETVWDDRNTPEINCRRREAVVQRTI 513

[Close]
BLAST of Spg020029 vs. NCBI nr
Match: TYK02367.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 113 SIMDINPGPLDASFLYDQVSHRSELVWNDGNLEELHCRRREAVLQRNI 161
           +IM +N GP+D + LYDQ  HRSE VW+D N  E++CRRREAV+QR I
Sbjct: 61  AIMALNRGPIDPNVLYDQNIHRSETVWDDRNTPEINCRRREAVVQRTI 108

[Close]
BLAST of Spg020029 vs. NCBI nr
Match: KAA0035034.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 6.6e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 113 SIMDINPGPLDASFLYDQVSHRSELVWNDGNLEELHCRRREAVLQRNI 161
           +IM +N GP+D + LYDQ  HRSE VW+D N  E++CRRREAV+QR I
Sbjct: 38  AIMALNRGPIDPNVLYDQNIHRSETVWDDRNTPEINCRRREAVVQRTI 85

[Close]
BLAST of Spg020029 vs. ExPASy TrEMBL
Match: A0A5A7THR5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00980 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 6.0e-14
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0 

Query: 1  MEDKCLAFVLHTNGTMIYGVNGIEYDQPACGGFTVNVNSGIVFNQFIEMVEMSLGIDSQC 60
          M DK L F+L  NG MI G +GI+YDQPACGGFT++VNSGIVF QFIE+V  S+GID + 
Sbjct: 1  MADKILGFMLFVNGNMIDGSDGIDYDQPACGGFTISVNSGIVFEQFIEIVGSSVGIDIRI 60

Query: 61 LDPE 65
           D E
Sbjct: 61 SDIE 64

[Close]
BLAST of Spg020029 vs. ExPASy TrEMBL
Match: A0A1S4E1F9 (keratin, type I cytoskeletal 9-like OS=Cucumis melo OX=3656 GN=LOC107991514 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.7e-11
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 1   MEDKCLAFVLHTNGTMIYGVNGIEYDQPACGGFTVNVNSGIVFNQFIEMVEMSLGID 58
           M +K ++F+L TNG MI GV+G++YDQP CG F++N NS IVF QF++MV +SLG+D
Sbjct: 197 MTNKYVSFLLFTNGHMINGVDGVDYDQPPCGNFSINWNSRIVFEQFLQMVGLSLGVD 253

[Close]
BLAST of Spg020029 vs. ExPASy TrEMBL
Match: A0A5D3DIM2 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00560 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-07
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 113 SIMDINPGPLDASFLYDQVSHRSELVWNDGNLEELHCRRREAVLQRNI 161
           +IM +N GP+D   LYDQ  HRSE VW+D N  E++CRRREAV+QR I
Sbjct: 466 AIMTLNRGPIDPDVLYDQNIHRSETVWDDRNTPEINCRRREAVVQRTI 513

[Close]
BLAST of Spg020029 vs. ExPASy TrEMBL
Match: A0A5A7SUU1 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G00870 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 113 SIMDINPGPLDASFLYDQVSHRSELVWNDGNLEELHCRRREAVLQRNI 161
           +IM +N GP+D + LYDQ  HRSE VW+D N  E++CRRREAV+QR I
Sbjct: 38  AIMALNRGPIDPNVLYDQNIHRSETVWDDRNTPEINCRRREAVVQRTI 85

[Close]
BLAST of Spg020029 vs. ExPASy TrEMBL
Match: A0A5D3BSH3 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00680 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.2e-07
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 113 SIMDINPGPLDASFLYDQVSHRSELVWNDGNLEELHCRRREAVLQRNI 161
           +IM +N GP+D + LYDQ  HRSE VW+D N  E++CRRREAV+QR I
Sbjct: 61  AIMALNRGPIDPNVLYDQNIHRSETVWDDRNTPEINCRRREAVVQRTI 108

The following BLAST results are available for this feature:
BLAST of Spg020029 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041167.11.2e-1364.06uncharacterized protein E6C27_scaffold128G00980 [Cucumis melo var. makuwa][more]
XP_016902058.17.6e-1157.89PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis melo][more]
KAA0040476.16.6e-0760.42serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYK02367.16.6e-0760.42serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0035034.16.6e-0760.42serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
BLAST of Spg020029 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg020029 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7THR56.0e-1464.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S4E1F93.7e-1157.89keratin, type I cytoskeletal 9-like OS=Cucumis melo OX=3656 GN=LOC107991514 PE=4... [more]
A0A5D3DIM23.2e-0760.42Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7SUU13.2e-0760.42Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3BSH33.2e-0760.42Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
BLAST of Spg020029 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg020029.1Spg020029.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048507 meristem development
molecular_function GO:0043167 ion binding